HHsearch alignment for GI: 254780952 and conserved domain: TIGR01970
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=96.63 E-value=0.0081 Score=38.08 Aligned_cols=73 Identities=25% Similarity=0.301 Sum_probs=54.2
Q ss_pred CHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 15888762998899998538989669995889883589999999999808999788676211479999999999985164
Q gi|254780952|r 22 CVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE 101 (685)
Q Consensus 22 ~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~ 101 (685)
T Consensus 2 PI~~vL----P~Lr~al~~~~--~vvL~APpGAGKsT~~P---LaLL~~pW~~~~kIimLEPRRlAAR~~A~rlA~~LgE 72 (858)
T TIGR01970 2 PIEAVL----PALRDALAAHP--QVVLEAPPGAGKSTAVP---LALLDAPWLIGGKIIMLEPRRLAARSAAQRLASQLGE 72 (858)
T ss_pred CHHHHH----HHHHHHHHCCC--CEEEECCCCCCHHHHHH---HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 625676----99999861176--50641672247110588---9976626434880787474478999999999997088
Q ss_pred CC
Q ss_conf 58
Q gi|254780952|r 102 KI 103 (685)
Q Consensus 102 ~~ 103 (685)
T Consensus 73 ~V 74 (858)
T TIGR01970 73 EV 74 (858)
T ss_pred CC
T ss_conf 98