HHsearch alignment for GI: 254780952 and conserved domain: TIGR02773
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B; InterPro: IPR014140 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in others. AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. This entry describes the ATP-dependent nuclease subunit B (AddB/RexB) protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous and functionally equivalent, merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function..
Probab=100.00 E-value=3.2e-29 Score=219.26 Aligned_cols=570 Identities=18% Similarity=0.251 Sum_probs=344.0
Q ss_pred EEEEEC-CCCCHHHHHHHHHHHHHHCCCCCHHHEEEE-----EECHHHHHHHHHHHHHHCC---CCCCEEEEHHHHHHHH
Q ss_conf 699958-898835899999999998089997886762-----1147999999999998516---4587896178999999
Q gi|254780952|r 46 LLILAG-AGTGKTTVLIARMLHLICHKEIPPSKILAM-----TFTNQAIQEMKNRLACYLG---EKIPRIQTFHSFCASI 116 (685)
Q Consensus 46 ~lV~Ag-aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~i-----TFT~~AA~el~~Ri~~~l~---~~~~~i~T~Hsf~~~i 116 (685)
T Consensus 3 l~~i~GRaGtGKs~~~i~~Ik~ki~~~p~-g~~iillVPdQ~TFq------~E~~l~~~~e~~g~lraqvlSF~RLA~rV 75 (1192)
T TIGR02773 3 LRFIYGRAGTGKSTFIIDEIKQKIKENPL-GKPIILLVPDQMTFQ------MEKALLNDIELNGSLRAQVLSFSRLAWRV 75 (1192)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCEEEECCCCCHHH------HHHHHHCCCCCCCCCCCEEEEHHHHHHHH
T ss_conf 17998326875457888999999710789-895378768852489------99998167776874441132044765568
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC--------HHHHHHHHHHHHHCCCCHHHHHHCC------
Q ss_conf 99849984879898072899999999999997399854789--------8999999866754158964612114------
Q gi|254780952|r 117 LRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYD--------PHEVIEKIDYWQNRGWNPKDIPQSS------ 182 (685)
Q Consensus 117 l~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~~k~~~~~~~~~~~~~------ 182 (685)
T Consensus 76 lqE~G---G~tr~--~l~~~G~~M~i~K~~ee~k~~lkvy~~A~~~~GF~~~l~~~itEfKry~v~pe~L~~~~~~~~~~ 150 (1192)
T TIGR02773 76 LQETG---GLTRQ--FLTQAGIEMLIRKVIEEHKDELKVYQKASRKKGFLAKLSEMITEFKRYEVTPEDLRKAAEELEDS 150 (1192)
T ss_pred HHHCC---CCHHH--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 76337---60267--79887589999999986011124788862325348999999887622068988999998610132
Q ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------6538999999999755777753001110001245430120688974012210253210775113468878775
Q gi|254780952|r 183 -------LTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLL 255 (685)
Q Consensus 183 -------~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L 255 (685)
T Consensus 151 ~~~~~~~l~~KL~Dl~~iY~~fe~~L~-~~y~~~ED~L~LL~~~l~~s~~~~~-----AeiyIDGF~~Ftp~e~~Vi~~L 224 (1192)
T TIGR02773 151 ERRSERVLKEKLEDLSLIYQEFEERLA-DEYIDSEDQLNLLAEKLEQSELLKG-----AEIYIDGFTSFTPQEYSVIEKL 224 (1192)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHCC-----CEEEEECCCCCCHHHHHHHHHH
T ss_conf 024416677668999999999999870-7757733448899987214254358-----5179835657677999999998
Q ss_pred HCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHH-----------HHHHCCCCCC---EEEEEEE---C-CCCCHHHHHHH
Q ss_conf 111126788759999530688631133220134-----------5542057664---0678761---2-67514678752
Q gi|254780952|r 256 CQKEDSKQGARICCVGDENQCIYEWRGAQFSHI-----------LNFQKDFKDA---NIIKLEQ---N-YRSTTHILNTA 317 (685)
Q Consensus 256 ~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~-----------~~f~~~f~~~---~~i~L~~---N-yRS~~~Ii~~a 317 (685)
T Consensus 225 ~k~a~~-vt--v~Lt~D~~~~~---~~~de~~LF~~t~~t~~~L~~la~~~-gi~v~~~~~~~~~~~~RF~~~~~LA~LE 297 (1192)
T TIGR02773 225 MKKAKK-VT--VSLTLDEPEYK---EEEDELDLFRATSETYYRLKELAKEL-GIEVEEPIFLNEERPNRFKKNKELAHLE 297 (1192)
T ss_pred HHHCCE-EE--EEEECCCCCCC---CCCCCHHHCCCCHHHHHHHHHHHHHC-CCCCCHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 531252-47--99854861101---57885322258678999999999874-9850103442133233114685489999
Q ss_pred HHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHH-HHCCCCCHHHHEECC-CHHHHHHHHHHHC
Q ss_conf 02444343201012222102355674488731553100000000136665-311365303111010-0147889987520
Q gi|254780952|r 318 NKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQ-NTGMSLNNIAILVRT-SWQTRKFEDAFLE 395 (685)
Q Consensus 318 n~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~-~~g~~~~diAVL~Rt-n~~~~~l~~~L~~ 395 (685)
T Consensus 298 ~~f~a~p---------~~~y~~~~~~l~i~~A~n~r~EvE~vAr~I~~L~Rdk~YRY~Diail~Rd~~~Y~~Lv~~vf~~ 368 (1192)
T TIGR02773 298 KQFDARP---------FKAYKEKEKSLSIFEANNRRAEVEGVARDILRLVRDKQYRYKDIAILTRDLEDYEKLVEAVFSD 368 (1192)
T ss_pred HHHHCCC---------CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHEECCHHHHHHHHHHHHCC
T ss_conf 8840167---------6676677656221110576135678999999997416784000342003821268999998513
Q ss_pred CCCCEEEECC-CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCC-C-----CCC-CHHHHHHHHHHHHHCCCCH-HHHH
Q ss_conf 2332032033-1000112102899999884663024575304687-5-----465-0246688887887739846-8999
Q gi|254780952|r 396 QEIPHKVIGG-SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCP-K-----RGI-GKESLHKIQYHASQHHISL-LQAS 466 (685)
Q Consensus 396 ~gIP~~~~g~-~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p-~-----~gi-~~~~l~~l~~~a~~~~~~~-~~~~ 466 (685)
T Consensus 369 YeIP~fID~K~~m~~hPlIe~irS~levi~~NW~ye~~Fr~lKT~ll~~~~~~~~~~~~~iD~LENYVle~GIkg~~rW~ 448 (1192)
T TIGR02773 369 YEIPYFIDKKRSMTNHPLIEFIRSILEVIQKNWRYEAVFRYLKTGLLFNVEEKFIDLRELIDLLENYVLEYGIKGKKRWW 448 (1192)
T ss_pred CCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCEEEEEECCCCCEEC
T ss_conf 77870134650102264866889999997615881267888765036776545436798864341201143045633113
Q ss_pred HHH---------HCCC--CCCHHHH---HHHHHHH----HHHHHHHHHCC-CCC---CHHHHHHHHH-HCCCHHHHHC--
Q ss_conf 764---------1046--7997785---4334343----33566653102-466---0222333477-7096678850--
Q gi|254780952|r 467 EKL---------IDSG--QFRPQIR---QSLQNFV----KDIRRWNNCSK-KMD---PAPIANMILE-QSGYMAMWKN-- 521 (685)
Q Consensus 467 ~~~---------~~~~--~~~~~~~---~~l~~~~----~~l~~~~~~~~-~~~---~~~l~~~i~~-~~~~~~~~~~-- 521 (685)
T Consensus 449 ~E~~~~y~~f~~~~~~~~~~td~E~e~~e~~N~~R~~iv~pl~~~~~~~~~aktvke~A~alY~fLes~~d~p~~L~~~r 528 (1192)
T TIGR02773 449 KEKWFKYRRFRGLDEKEFAQTDEERELQEKLNELREDIVDPLETFEKRLKKAKTVKEFATALYEFLESELDIPEKLEKFR 528 (1192)
T ss_pred CCCEEEEEHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 68645430000256212024533578899987657775017899999853133647999999998877413468889999
Q ss_pred -----CCCHHH---HHHHHHH----HHHHHHHHHHCC-CHHHHHHHHHHHH---HHHHCCCCCCCEEEEEECCCCCCCCC
Q ss_conf -----688455---8988843----999999983026-8899999757654---22111545893699961134556698
Q gi|254780952|r 522 -----NKSSEK---SQERLDN----LRELLSIIEKHE-TLEGFVLQAPLRE---NLGSFIPDSNCIQIMTLHAAKGLEFD 585 (685)
Q Consensus 522 -----~~~~~~---~~~~l~~----l~~l~~~~~~~~-sl~~fl~~~~~~~---~~~~~~~~~d~V~i~TIH~SKGLEfd 585 (685)
T Consensus 529 ~~~~~~G~~e~A~e~~Q~Wdavi~lLde~VevlG~E~~~L~~F~~~~~iGle~l~fs~iPpaLDqV~vg~~d~~k~~n~k 608 (1192)
T TIGR02773 529 DRFDEDGRLEEAREYEQIWDAVIQLLDEMVEVLGEEEMDLNEFQEVIDIGLEQLEFSLIPPALDQVLVGDMDRAKMSNTK 608 (1192)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCHHHCEEEECCEEEEEECCCC
T ss_conf 97641784022356899999999999999887378701789999999843012434227720485665131100005872
Q ss_pred EEEECCCCCCCCCCHHCC----CHH-------------------HHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCC
Q ss_conf 369846857668422129----967-------------------878999999999858641169983132112576543
Q gi|254780952|r 586 TVFISGWEQGLLPHQLSI----NEG-------------------NVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRV 642 (685)
Q Consensus 586 ~V~i~gl~~g~~P~~~~~----~~~-------------------~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~ 642 (685)
T Consensus 609 ~~y~lG~NDGv~P~~~~e~GilsD~eR~~L~~~~q~~L~~~~~~~~~dE~Fl~Y~A~t~ase~L~~SYpla--------D 680 (1192)
T TIGR02773 609 VIYLLGVNDGVLPARSKEEGILSDEERELLEQKGQVELSSTSKEKLLDEQFLVYTAFTSASERLKVSYPLA--------D 680 (1192)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--------C
T ss_conf 69997457765688877677546899999985165012630233211578999998707855368852135--------6
Q ss_pred CCCCCCCCCCHHHHC
Q ss_conf 335556888723314
Q gi|254780952|r 643 ERYQPSQVSQFLLEL 657 (685)
Q Consensus 643 ~~~~~~~~SrFl~El 657 (685)
T Consensus 681 ~EGk~~~pS~~i~rl 695 (1192)
T TIGR02773 681 AEGKSLRPSIIIHRL 695 (1192)
T ss_pred CCCCCCCCCHHHHHH
T ss_conf 124124756378999