HHsearch alignment for GI: 254780952 and conserved domain: TIGR02784

>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00  E-value=0  Score=738.32  Aligned_cols=582  Identities=24%  Similarity=0.316  Sum_probs=414.8

Q ss_pred             HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC----------
Q ss_conf             8899998538989669995889883589999999999808999788676211479999999999985164----------
Q gi|254780952|r   32 AQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE----------  101 (685)
Q Consensus        32 ~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~----------  101 (685)
T Consensus         1 ~~Q~~A--aDP~~S~WVSANAGSGKTHVLt~RViRLLL~-G~~P~~ILCLTYTKAAAAeMq~RvF~rL~~Wa~L~nD~~L   77 (1190)
T TIGR02784         1 DRQAQA--ADPAASAWVSANAGSGKTHVLTQRVIRLLLA-GTEPSKILCLTYTKAAAAEMQNRVFKRLGEWAVLDNDADL   77 (1190)
T ss_pred             CCCCCC--CCCCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             941200--3777470124316788522489999998617-8783100020555899999999987551044438886889


Q ss_pred             ----------------------------------CCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             ----------------------------------5878961789999999984998487989807289999999999999
Q gi|254780952|r  102 ----------------------------------KIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLK  147 (685)
Q Consensus       102 ----------------------------------~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~  147 (685)
T Consensus        78 ~~~l~~LeGe~~~~~da~~L~~AR~LFArALETPGGLKIQTIHAFCe~LL~~FPLEAnv~~~F~~~DDr~~A~l~~~arr  157 (1190)
T TIGR02784        78 RARLEALEGEAGKRPDAAKLAEARRLFARALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVIDDRAAAALLEEARR  157 (1190)
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHH
T ss_conf             99999842546888888899999899999741787761577799999885207751378988533026899999999999


Q ss_pred             HCCCCCC-------------------CCCHHHHHH-----------HHHHHH-----------HCCCCH----HHHHH--
Q ss_conf             7399854-------------------789899999-----------986675-----------415896----46121--
Q gi|254780952|r  148 DLQIDDK-------------------DYDPHEVIE-----------KIDYWQ-----------NRGWNP----KDIPQ--  180 (685)
Q Consensus       148 ~~~~~~~-------------------~~~~~~~~~-----------~i~~~k-----------~~~~~~----~~~~~--  180 (685)
T Consensus       158 ~ll~~~~~~~d~~~~~a~a~~l~~~~e~gl~~ll~ei~~~R~~~~~fl~~~~~~~~~~~~l~~~lgl~~~~~~e~l~~~~  237 (1190)
T TIGR02784       158 ELLAGAAAPPDPALAEALATVLEAAGETGLEALLAEIVAKRDALSAFLDEAGGAEGAEADLRRALGLAPGDTAEDLLEAV  237 (1190)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             99723037884058999999998716558789999999616888789998640235899999982979998977899996


Q ss_pred             ---------------------------------------------------------------------CCCC-------
Q ss_conf             ---------------------------------------------------------------------1465-------
Q gi|254780952|r  181 ---------------------------------------------------------------------SSLT-------  184 (685)
Q Consensus       181 ---------------------------------------------------------------------~~~~-------  184 (685)
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~d~~a~~~~l~~~~l~~~G~~k~~~~~~~k~~~~~~p~l~  317 (1190)
T TIGR02784       238 WPLPGLPRLALALIAALLKSGGGSKDAAAALSQLREAAAESDPVARLDLLLRAFLTSKGEPKSASAVLKKAIQKSLPDLA  317 (1190)
T ss_pred             HCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             03789818999999986135665047999987887506878704589999998740688766303465456565458999


Q ss_pred             --------------HHH-------------HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCC----CE
Q ss_conf             --------------389-------------99999999755777753001110001245430120688974012----21
Q gi|254780952|r  185 --------------EDA-------------EIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHE----KI  233 (685)
Q Consensus       185 --------------~~~-------------~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~----r~  233 (685)
T Consensus       318 ~~~~~~~~~~~~~~~r~~~~~~~~~t~AAL~lA~~l~~~y~~~K~~rG~LDF~DLI~rt~~LL~r~~~g~WV~YKLD~Gi  397 (1190)
T TIGR02784       318 EALEDAASRVEALRERLRALRMAERTLAALRLAARLLQRYAALKKARGLLDFDDLIERTVALLARPSAGAWVHYKLDRGI  397 (1190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEHCCCCCC
T ss_conf             99999999999999899999999988999999999999999998747898767799999997088986743001017750


Q ss_pred             EHHHHHHHHHHHHHHHHHHHHHHCCC------CCC----CCCEEEEEECHHHHHHHCCCCCCHHHHHHHC----CCCC--
Q ss_conf             02532107751134688787751111------267----8875999953068863113322013455420----5766--
Q gi|254780952|r  234 PYIMVDEYQDINTPQYLLLRLLCQKE------DSK----QGARICCVGDENQCIYEWRGAQFSHILNFQK----DFKD--  297 (685)
Q Consensus       234 ~~ilVDEfQDtn~~Q~~ll~~L~~~~------~~~----~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~----~f~~--  297 (685)
T Consensus       398 DHILvDEAQDTSP~QW~iI~~LA~eFF~GegAR~~sGr~~~RTiFAVGDeKQSIYSFQGA~P~~F~~~~~~~~~k~~~~~  477 (1190)
T TIGR02784       398 DHILVDEAQDTSPEQWEIIQALAEEFFSGEGARSGSGREVERTIFAVGDEKQSIYSFQGADPERFAEERRLFSRKVRAVG  477 (1190)
T ss_pred             CEEEECCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             43771220048865899999998763068640246762245326887673104454567755689999889999998610


Q ss_pred             --CEEEEEEECCCCCHHHHHHHHHHHHH--HHHHCCH------H-HHHHCCCCCCCCEEEEECCC--CCH----------
Q ss_conf             --40678761267514678752024443--4320101------2-22210235567448873155--310----------
Q gi|254780952|r  298 --ANIIKLEQNYRSTTHILNTANKLISH--NKQRFDK------K-LFTQRDCHDDAKVSIHVSQS--DNS----------  354 (685)
Q Consensus       298 --~~~i~L~~NyRS~~~Ii~~an~li~~--n~~r~~k------~-l~~~~~~~~~~~v~~~~~~~--~~~----------  354 (685)
T Consensus       478 ~~f~~~~L~~SFRST~dvL~~VD~vF~dP~~~~G~~~~~~q~~~~H~a~R-~~~PG~V~LWd~i~DY~~~~e~~edW~~P  556 (1190)
T TIGR02784       478 RKFEDVSLTYSFRSTPDVLAAVDLVFADPENARGLSGDSEQAAVVHEAIR-DDLPGEVDLWDLISDYKEEGEEPEDWTDP  556 (1190)
T ss_pred             CCCCCCEEECCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCCHHHCCC
T ss_conf             02677302023058489999998874482121488877555212379974-28988588547723578788881002044


Q ss_pred             ------------HCCCCCHHHHHHHHHC-----------------CCCCHHHHEECCCH-HHHHHHHHHHCC-CCCEEEE
Q ss_conf             ------------0000000136665311-----------------36530311101001-478899875202-3320320
Q gi|254780952|r  355 ------------ELSTIIQEIINIQNTG-----------------MSLNNIAILVRTSW-QTRKFEDAFLEQ-EIPHKVI  403 (685)
Q Consensus       355 ------------Ea~~Ia~~I~~l~~~g-----------------~~~~diAVL~Rtn~-~~~~l~~~L~~~-gIP~~~~  403 (685)
T Consensus       557 ~D~~~~~~p~~~LAerIAa~I~~w~~~g~~i~vdGe~k~~g~~R~~~pGDiLvLVRkR~~l~~al~rALK~r~~iPV--A  634 (1190)
T TIGR02784       557 VDELGERAPEVRLAERIAAEIRAWLDRGEIIPVDGEDKGLGRRRAVRPGDILVLVRKRDALFSALIRALKRRKGIPV--A  634 (1190)
T ss_pred             CCCHHHHCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCE--E
T ss_conf             57012306304899999999999718986542158776646686335575367630557799999999983589834--3


Q ss_pred             CC---CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHCCCCCCHH
Q ss_conf             33---100011210289999988466302457530468754650246688887887739--8468999764104679977
Q gi|254780952|r  404 GG---SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHH--ISLLQASEKLIDSGQFRPQ  478 (685)
Q Consensus       404 g~---~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~--~~~~~~~~~~~~~~~~~~~  478 (685)
T Consensus       635 GADRL~Lt~hiAV~DL~AL~rFvL~P~DDLSLA~lLKSPLfgl~ed~LF~LA---~~R~~~esLw~~L~~~~~e~-----  706 (1190)
T TIGR02784       635 GADRLKLTSHIAVKDLMALGRFVLQPEDDLSLAALLKSPLFGLDEDDLFALA---AGRSGGESLWAALRRRAAES-----  706 (1190)
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHH---CCCCCCCCHHHHHHHHHCCC-----
T ss_conf             0440346741258999999998548984378999981568999878999995---16897520899999851578-----


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-----HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC-----CH
Q ss_conf             8543343433356665310246602223334777096-----6788506884558988843999999983026-----88
Q gi|254780952|r  479 IRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGY-----MAMWKNNKSSEKSQERLDNLRELLSIIEKHE-----TL  548 (685)
Q Consensus       479 ~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~-----~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~-----sl  548 (685)
T Consensus       707 -~~~~~~~~~~L~~~~~~ad~~~pf~Fya~~L~~d~g~GrshR~klL~RLG----~EA~D~lDEfL~~AL~~Er~g~PgL  781 (1190)
T TIGR02784       707 -TAEFAETLAVLDAWLSLADFLTPFEFYARLLGRDDGDGRSHRRKLLARLG----AEAEDILDEFLSQALAYERTGLPGL  781 (1190)
T ss_pred             -CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             -85489999999999713471550999999866889982589999998414----3466899999999999872368606


Q ss_pred             HHHHHHHHHHHHHHHC--CCCCCCEEEEEECCCCCCCCCEEEECCCCCCC----------------------CCCHHC--
Q ss_conf             9999975765422111--54589369996113455669836984685766----------------------842212--
Q gi|254780952|r  549 EGFVLQAPLRENLGSF--IPDSNCIQIMTLHAAKGLEFDTVFISGWEQGL----------------------LPHQLS--  602 (685)
Q Consensus       549 ~~fl~~~~~~~~~~~~--~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~----------------------~P~~~~--  602 (685)
T Consensus       782 qaFL~~L~~~d~EiKRe~d~~r~eVRvMTVHgaKGLEAPVVfLvD~gs~~~~~~~~~~l~~~~~~g~~~~~~~~~W~~~~  861 (1190)
T TIGR02784       782 QAFLSWLEAADPEIKREMDQARDEVRVMTVHGAKGLEAPVVFLVDTGSKPFASQRVPKLLATGGSGDANDVKVPLWRPAS  861 (1190)
T ss_pred             HHHHHHHHHCCCEEECCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCC
T ss_conf             89999872079486125589988788877654665665767703877232468886301212788877664034206743


Q ss_pred             -------------CCHHHHHHHHHHHHHHHHHHHHEEEEEECC
Q ss_conf             -------------996787899999999985864116998313
Q gi|254780952|r  603 -------------INEGNVEGERRLAYVGITRAKKKCHLFYTI  632 (685)
Q Consensus       603 -------------~~~~~~eEErRL~YVA~TRAk~~L~l~~~~  632 (685)
T Consensus       862 ~~~~~~~~~a~~~~k~~~~~EyrRLLYVamTRAedrLIVcG~~  904 (1190)
T TIGR02784       862 AFDPKLSAAARERLKERAEDEYRRLLYVAMTRAEDRLIVCGYR  904 (1190)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             1477268999999986887546787899989998675443467