HHsearch alignment for GI: 254780952 and conserved domain: TIGR02784
>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00 E-value=0 Score=738.32 Aligned_cols=582 Identities=24% Similarity=0.316 Sum_probs=414.8
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC----------
Q ss_conf 8899998538989669995889883589999999999808999788676211479999999999985164----------
Q gi|254780952|r 32 AQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE---------- 101 (685)
Q Consensus 32 ~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~---------- 101 (685)
T Consensus 1 ~~Q~~A--aDP~~S~WVSANAGSGKTHVLt~RViRLLL~-G~~P~~ILCLTYTKAAAAeMq~RvF~rL~~Wa~L~nD~~L 77 (1190)
T TIGR02784 1 DRQAQA--ADPAASAWVSANAGSGKTHVLTQRVIRLLLA-GTEPSKILCLTYTKAAAAEMQNRVFKRLGEWAVLDNDADL 77 (1190)
T ss_pred CCCCCC--CCCCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 941200--3777470124316788522489999998617-8783100020555899999999987551044438886889
Q ss_pred ----------------------------------CCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ----------------------------------5878961789999999984998487989807289999999999999
Q gi|254780952|r 102 ----------------------------------KIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLK 147 (685)
Q Consensus 102 ----------------------------------~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~ 147 (685)
T Consensus 78 ~~~l~~LeGe~~~~~da~~L~~AR~LFArALETPGGLKIQTIHAFCe~LL~~FPLEAnv~~~F~~~DDr~~A~l~~~arr 157 (1190)
T TIGR02784 78 RARLEALEGEAGKRPDAAKLAEARRLFARALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVIDDRAAAALLEEARR 157 (1190)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHH
T ss_conf 99999842546888888899999899999741787761577799999885207751378988533026899999999999
Q ss_pred HCCCCCC-------------------CCCHHHHHH-----------HHHHHH-----------HCCCCH----HHHHH--
Q ss_conf 7399854-------------------789899999-----------986675-----------415896----46121--
Q gi|254780952|r 148 DLQIDDK-------------------DYDPHEVIE-----------KIDYWQ-----------NRGWNP----KDIPQ-- 180 (685)
Q Consensus 148 ~~~~~~~-------------------~~~~~~~~~-----------~i~~~k-----------~~~~~~----~~~~~-- 180 (685)
T Consensus 158 ~ll~~~~~~~d~~~~~a~a~~l~~~~e~gl~~ll~ei~~~R~~~~~fl~~~~~~~~~~~~l~~~lgl~~~~~~e~l~~~~ 237 (1190)
T TIGR02784 158 ELLAGAAAPPDPALAEALATVLEAAGETGLEALLAEIVAKRDALSAFLDEAGGAEGAEADLRRALGLAPGDTAEDLLEAV 237 (1190)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99723037884058999999998716558789999999616888789998640235899999982979998977899996
Q ss_pred ---------------------------------------------------------------------CCCC-------
Q ss_conf ---------------------------------------------------------------------1465-------
Q gi|254780952|r 181 ---------------------------------------------------------------------SSLT------- 184 (685)
Q Consensus 181 ---------------------------------------------------------------------~~~~------- 184 (685)
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~d~~a~~~~l~~~~l~~~G~~k~~~~~~~k~~~~~~p~l~ 317 (1190)
T TIGR02784 238 WPLPGLPRLALALIAALLKSGGGSKDAAAALSQLREAAAESDPVARLDLLLRAFLTSKGEPKSASAVLKKAIQKSLPDLA 317 (1190)
T ss_pred HCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 03789818999999986135665047999987887506878704589999998740688766303465456565458999
Q ss_pred --------------HHH-------------HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCC----CE
Q ss_conf --------------389-------------99999999755777753001110001245430120688974012----21
Q gi|254780952|r 185 --------------EDA-------------EIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHE----KI 233 (685)
Q Consensus 185 --------------~~~-------------~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~----r~ 233 (685)
T Consensus 318 ~~~~~~~~~~~~~~~r~~~~~~~~~t~AAL~lA~~l~~~y~~~K~~rG~LDF~DLI~rt~~LL~r~~~g~WV~YKLD~Gi 397 (1190)
T TIGR02784 318 EALEDAASRVEALRERLRALRMAERTLAALRLAARLLQRYAALKKARGLLDFDDLIERTVALLARPSAGAWVHYKLDRGI 397 (1190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEHCCCCCC
T ss_conf 99999999999999899999999988999999999999999998747898767799999997088986743001017750
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHCCC------CCC----CCCEEEEEECHHHHHHHCCCCCCHHHHHHHC----CCCC--
Q ss_conf 02532107751134688787751111------267----8875999953068863113322013455420----5766--
Q gi|254780952|r 234 PYIMVDEYQDINTPQYLLLRLLCQKE------DSK----QGARICCVGDENQCIYEWRGAQFSHILNFQK----DFKD-- 297 (685)
Q Consensus 234 ~~ilVDEfQDtn~~Q~~ll~~L~~~~------~~~----~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~----~f~~-- 297 (685)
T Consensus 398 DHILvDEAQDTSP~QW~iI~~LA~eFF~GegAR~~sGr~~~RTiFAVGDeKQSIYSFQGA~P~~F~~~~~~~~~k~~~~~ 477 (1190)
T TIGR02784 398 DHILVDEAQDTSPEQWEIIQALAEEFFSGEGARSGSGREVERTIFAVGDEKQSIYSFQGADPERFAEERRLFSRKVRAVG 477 (1190)
T ss_pred CEEEECCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 43771220048865899999998763068640246762245326887673104454567755689999889999998610
Q ss_pred --CEEEEEEECCCCCHHHHHHHHHHHHH--HHHHCCH------H-HHHHCCCCCCCCEEEEECCC--CCH----------
Q ss_conf --40678761267514678752024443--4320101------2-22210235567448873155--310----------
Q gi|254780952|r 298 --ANIIKLEQNYRSTTHILNTANKLISH--NKQRFDK------K-LFTQRDCHDDAKVSIHVSQS--DNS---------- 354 (685)
Q Consensus 298 --~~~i~L~~NyRS~~~Ii~~an~li~~--n~~r~~k------~-l~~~~~~~~~~~v~~~~~~~--~~~---------- 354 (685)
T Consensus 478 ~~f~~~~L~~SFRST~dvL~~VD~vF~dP~~~~G~~~~~~q~~~~H~a~R-~~~PG~V~LWd~i~DY~~~~e~~edW~~P 556 (1190)
T TIGR02784 478 RKFEDVSLTYSFRSTPDVLAAVDLVFADPENARGLSGDSEQAAVVHEAIR-DDLPGEVDLWDLISDYKEEGEEPEDWTDP 556 (1190)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCCHHHCCC
T ss_conf 02677302023058489999998874482121488877555212379974-28988588547723578788881002044
Q ss_pred ------------HCCCCCHHHHHHHHHC-----------------CCCCHHHHEECCCH-HHHHHHHHHHCC-CCCEEEE
Q ss_conf ------------0000000136665311-----------------36530311101001-478899875202-3320320
Q gi|254780952|r 355 ------------ELSTIIQEIINIQNTG-----------------MSLNNIAILVRTSW-QTRKFEDAFLEQ-EIPHKVI 403 (685)
Q Consensus 355 ------------Ea~~Ia~~I~~l~~~g-----------------~~~~diAVL~Rtn~-~~~~l~~~L~~~-gIP~~~~ 403 (685)
T Consensus 557 ~D~~~~~~p~~~LAerIAa~I~~w~~~g~~i~vdGe~k~~g~~R~~~pGDiLvLVRkR~~l~~al~rALK~r~~iPV--A 634 (1190)
T TIGR02784 557 VDELGERAPEVRLAERIAAEIRAWLDRGEIIPVDGEDKGLGRRRAVRPGDILVLVRKRDALFSALIRALKRRKGIPV--A 634 (1190)
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCE--E
T ss_conf 57012306304899999999999718986542158776646686335575367630557799999999983589834--3
Q ss_pred CC---CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHCCCCCCHH
Q ss_conf 33---100011210289999988466302457530468754650246688887887739--8468999764104679977
Q gi|254780952|r 404 GG---SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHH--ISLLQASEKLIDSGQFRPQ 478 (685)
Q Consensus 404 g~---~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 478 (685)
T Consensus 635 GADRL~Lt~hiAV~DL~AL~rFvL~P~DDLSLA~lLKSPLfgl~ed~LF~LA---~~R~~~esLw~~L~~~~~e~----- 706 (1190)
T TIGR02784 635 GADRLKLTSHIAVKDLMALGRFVLQPEDDLSLAALLKSPLFGLDEDDLFALA---AGRSGGESLWAALRRRAAES----- 706 (1190)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHH---CCCCCCCCHHHHHHHHHCCC-----
T ss_conf 0440346741258999999998548984378999981568999878999995---16897520899999851578-----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-----HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC-----CH
Q ss_conf 8543343433356665310246602223334777096-----6788506884558988843999999983026-----88
Q gi|254780952|r 479 IRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGY-----MAMWKNNKSSEKSQERLDNLRELLSIIEKHE-----TL 548 (685)
Q Consensus 479 ~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~-----~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~-----sl 548 (685)
T Consensus 707 -~~~~~~~~~~L~~~~~~ad~~~pf~Fya~~L~~d~g~GrshR~klL~RLG----~EA~D~lDEfL~~AL~~Er~g~PgL 781 (1190)
T TIGR02784 707 -TAEFAETLAVLDAWLSLADFLTPFEFYARLLGRDDGDGRSHRRKLLARLG----AEAEDILDEFLSQALAYERTGLPGL 781 (1190)
T ss_pred -CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf -85489999999999713471550999999866889982589999998414----3466899999999999872368606
Q ss_pred HHHHHHHHHHHHHHHC--CCCCCCEEEEEECCCCCCCCCEEEECCCCCCC----------------------CCCHHC--
Q ss_conf 9999975765422111--54589369996113455669836984685766----------------------842212--
Q gi|254780952|r 549 EGFVLQAPLRENLGSF--IPDSNCIQIMTLHAAKGLEFDTVFISGWEQGL----------------------LPHQLS-- 602 (685)
Q Consensus 549 ~~fl~~~~~~~~~~~~--~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~----------------------~P~~~~-- 602 (685)
T Consensus 782 qaFL~~L~~~d~EiKRe~d~~r~eVRvMTVHgaKGLEAPVVfLvD~gs~~~~~~~~~~l~~~~~~g~~~~~~~~~W~~~~ 861 (1190)
T TIGR02784 782 QAFLSWLEAADPEIKREMDQARDEVRVMTVHGAKGLEAPVVFLVDTGSKPFASQRVPKLLATGGSGDANDVKVPLWRPAS 861 (1190)
T ss_pred HHHHHHHHHCCCEEECCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCC
T ss_conf 89999872079486125589988788877654665665767703877232468886301212788877664034206743
Q ss_pred -------------CCHHHHHHHHHHHHHHHHHHHHEEEEEECC
Q ss_conf -------------996787899999999985864116998313
Q gi|254780952|r 603 -------------INEGNVEGERRLAYVGITRAKKKCHLFYTI 632 (685)
Q Consensus 603 -------------~~~~~~eEErRL~YVA~TRAk~~L~l~~~~ 632 (685)
T Consensus 862 ~~~~~~~~~a~~~~k~~~~~EyrRLLYVamTRAedrLIVcG~~ 904 (1190)
T TIGR02784 862 AFDPKLSAAARERLKERAEDEYRRLLYVAMTRAEDRLIVCGYR 904 (1190)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1477268999999986887546787899989998675443467