HHsearch alignment for GI: 254780952 and conserved domain: TIGR02786
>TIGR02786 addB_alphas double-strand break repair protein AddB; InterPro: IPR014153 AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage . More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of alphaproteobacterial types..
Probab=98.04 E-value=7.6e-05 Score=52.02 Aligned_cols=104 Identities=11% Similarity=0.055 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHHHH
Q ss_conf 67448873155310000000013666531136530311101001478899875202332032033-10001121028999
Q gi|254780952|r 341 DAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAY 419 (685)
Q Consensus 341 ~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~lla~ 419 (685)
T Consensus 367 ~~~~s~iEA~~~reEA~AIAlaLR~A~ed~~~-~tAALVTPDR~LARRV~a~L~RFGi~aDDSaG~pL~~tp~a~llrl~ 445 (1096)
T TIGR02786 367 FANLSLIEAANEREEALAIALALREAVEDPGK-KTAALVTPDRALARRVAAELKRFGIEADDSAGRPLSQTPAAVLLRLL 445 (1096)
T ss_pred CCCCEEECCCCHHHHHHHHHHHHHHHHHHCCC-CCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 24650304788746999999999998722489-83121130155899999876534866577677423331178999999
Q ss_pred HHHHHCCCHHHHHHHCCCCCCCCCCH
Q ss_conf 99884663024575304687546502
Q gi|254780952|r 420 FRLVCQEHRDEDFKRIINCPKRGIGK 445 (685)
Q Consensus 420 Lr~i~~p~d~~a~~~il~~p~~gi~~ 445 (685)
T Consensus 446 ~~~~~~pldPv~LLs~lKHPL~~lG~ 471 (1096)
T TIGR02786 446 AEAVFAPLDPVALLSLLKHPLVRLGE 471 (1096)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99986678805699986305653378