HHsearch alignment for GI: 254780952 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

Probab=91.09  E-value=0.53  Score=25.61  Aligned_cols=68  Identities=22%  Similarity=0.432  Sum_probs=43.6

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCH----HHEEEEEECHHHH-----HHHHHHHHHHCCC----CC---CEEE
Q ss_conf             96699958898835899999999998089997----8867621147999-----9999999985164----58---7896
Q gi|254780952|r   44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPP----SKILAMTFTNQAI-----QEMKNRLACYLGE----KI---PRIQ  107 (685)
Q Consensus        44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p----~~Il~iTFT~~AA-----~el~~Ri~~~l~~----~~---~~i~  107 (685)
T Consensus       195 NNpiLVGepGVGKTA-IvEGLA~rI~~g~VP~~L~~~~i~~LDlg~LvAGtkyRGeFEeRlk~ii~ev~~~~~~iILFID  273 (852)
T TIGR03346       195 NNPVLIGEPGVGKTA-IVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFID  273 (852)
T ss_pred             CCCCEECCCCCCHHH-HHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf             897212799987999-9999999986699997885185127528877521530078999999999999858998799961


Q ss_pred             EHHHH
Q ss_conf             17899
Q gi|254780952|r  108 TFHSF  112 (685)
Q Consensus       108 T~Hsf  112 (685)
T Consensus       274 EiHtl  278 (852)
T TIGR03346       274 ELHTL  278 (852)
T ss_pred             HHHHH
T ss_conf             25553