HHsearch alignment for GI: 254780952 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.65 E-value=0.39 Score=26.52 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=24.0
Q ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 9853898966999588988358999999999980899978867621
Q gi|254780952|r 37 AVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 37 av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
T Consensus 32 ~~~~~~~~~l~i~G~~GsGKTHLl~a-~~~~~~~~~---~~~~yl~ 73 (226)
T TIGR03420 32 LAAGKGDRFLYLWGESGSGKSHLLQA-ACAAAEERG---KSAIYLP 73 (226)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCCC---CCEEEEC
T ss_conf 76466888699989999988999999-999986269---9579952