HHsearch alignment for GI: 254780952 and conserved domain: TIGR03420

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.65  E-value=0.39  Score=26.52  Aligned_cols=42  Identities=17%  Similarity=0.198  Sum_probs=24.0

Q ss_pred             HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf             9853898966999588988358999999999980899978867621
Q gi|254780952|r   37 AVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT   82 (685)
Q Consensus        37 av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT   82 (685)
T Consensus        32 ~~~~~~~~~l~i~G~~GsGKTHLl~a-~~~~~~~~~---~~~~yl~   73 (226)
T TIGR03420        32 LAAGKGDRFLYLWGESGSGKSHLLQA-ACAAAEERG---KSAIYLP   73 (226)
T ss_pred             HHHCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCCC---CCEEEEC
T ss_conf             76466888699989999988999999-999986269---9579952