HHsearch alignment for GI: 254780952 and conserved domain: cd00268

>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.90  E-value=0.0046  Score=39.79  Aligned_cols=82  Identities=12%  Similarity=0.097  Sum_probs=52.4

Q ss_pred             HCCCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             62998899998538-98966999588988358999999999980-89997886762114799999999999851645878
Q gi|254780952|r   28 KGLNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARMLHLICH-KEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPR  105 (685)
Q Consensus        28 ~~Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~-~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~  105 (685)
T Consensus        20 ~~pt~IQ~~~ip~il~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~   99 (203)
T cd00268          20 EKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLK   99 (203)
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             99999999999999779988997579972228888699999861667689669999687999999999999850579838


Q ss_pred             EEEH
Q ss_conf             9617
Q gi|254780952|r  106 IQTF  109 (685)
Q Consensus       106 i~T~  109 (685)
T Consensus       100 ~~~~  103 (203)
T cd00268         100 VVVI  103 (203)
T ss_pred             EEEE
T ss_conf             9998