HHsearch alignment for GI: 254780952 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.90 E-value=0.0046 Score=39.79 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=52.4
Q ss_pred HCCCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 62998899998538-98966999588988358999999999980-89997886762114799999999999851645878
Q gi|254780952|r 28 KGLNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARMLHLICH-KEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPR 105 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~-~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~ 105 (685)
T Consensus 20 ~~pt~IQ~~~ip~il~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~ 99 (203)
T cd00268 20 EKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLK 99 (203)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999999999779988997579972228888699999861667689669999687999999999999850579838
Q ss_pred EEEH
Q ss_conf 9617
Q gi|254780952|r 106 IQTF 109 (685)
Q Consensus 106 i~T~ 109 (685)
T Consensus 100 ~~~~ 103 (203)
T cd00268 100 VVVI 103 (203)
T ss_pred EEEE
T ss_conf 9998