HHsearch alignment for GI: 254780952 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.

Probab=95.53  E-value=0.031  Score=34.08  Aligned_cols=37  Identities=27%  Similarity=0.341  Sum_probs=25.8

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHH
Q ss_conf             69995889883589999999999808999788676211479
Q gi|254780952|r   46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQ   86 (685)
Q Consensus        46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~   86 (685)
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~~-g---e~~lyis~eE~   38 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLAR-G---EPGLYVTLEES   38 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHC-C---CCEEEEEECCC
T ss_conf             1587689999999999999999876-9---97899995079