HHsearch alignment for GI: 254780952 and conserved domain: cd01133
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=90.52 E-value=1.2 Score=23.26 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=19.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 989669995889883589999999999
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
T Consensus 68 kGQR~~I~~~~g~GKt~ll~~ii~~~~ 94 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIA 94 (274)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 785778757999982368999999998