Query gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 685
No_of_seqs 238 out of 5864
Neff 8.6
Searched_HMMs 39220
Date Mon May 30 06:06:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780952.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01073 pcrA ATP-dependent D 100.0 0 0 1308.8 40.9 626 26-660 1-706 (811)
2 TIGR01074 rep ATP-dependent DN 100.0 0 0 1211.2 37.3 617 28-658 2-640 (677)
3 TIGR01075 uvrD DNA helicase II 100.0 0 0 1207.6 33.3 620 26-658 1-650 (741)
4 PRK11773 uvrD DNA-dependent he 100.0 0 0 1147.2 51.3 623 21-658 1-637 (722)
5 PRK10919 ATP-dependent DNA hel 100.0 0 0 1069.9 46.9 615 29-658 2-634 (672)
6 COG0210 UvrD Superfamily I DNA 100.0 0 0 926.0 43.7 620 28-659 1-640 (655)
7 TIGR02785 addA_Gpos recombinat 100.0 0 0 816.4 34.9 595 31-632 3-926 (1295)
8 pfam00580 UvrD-helicase UvrD/R 100.0 0 0 790.5 38.3 478 30-515 1-494 (494)
9 TIGR02784 addA_alphas double-s 100.0 0 0 738.3 33.1 582 32-632 1-904 (1190)
10 PRK13909 putative recombinatio 100.0 0 0 725.8 33.2 516 46-632 1-696 (911)
11 PRK10876 recB exonuclease V su 100.0 0 0 711.0 41.0 559 38-631 11-818 (1181)
12 COG1074 RecB ATP-dependent exo 100.0 0 0 711.4 39.3 589 29-638 3-842 (1139)
13 PRK11054 helD DNA helicase IV; 100.0 0 0 722.4 30.1 302 28-337 195-532 (684)
14 TIGR00609 recB exodeoxyribonuc 100.0 0 0 592.0 27.4 585 40-633 6-917 (1324)
15 KOG2108 consensus 100.0 0 0 393.3 5.3 423 20-463 3-457 (853)
16 TIGR02773 addB_Gpos ATP-depend 100.0 3.2E-29 8.3E-34 219.3 28.9 570 46-657 3-695 (1192)
17 COG3973 Superfamily I DNA and 100.0 6.3E-28 1.6E-32 210.4 19.7 345 21-388 204-670 (747)
18 COG3857 AddB ATP-dependent nuc 100.0 1.5E-24 3.8E-29 187.2 30.7 553 47-633 5-639 (1108)
19 TIGR03623 probable DNA repair 99.8 1.4E-15 3.5E-20 125.7 35.8 491 78-659 2-555 (874)
20 COG3972 Superfamily I DNA and 99.8 8.3E-20 2.1E-24 154.7 14.0 221 20-320 153-386 (660)
21 PRK10875 recD exonuclease V su 99.8 3E-18 7.5E-23 144.0 14.1 81 18-98 130-217 (607)
22 KOG1803 consensus 99.8 4.2E-18 1.1E-22 143.0 12.1 244 26-324 182-449 (649)
23 TIGR01448 recD_rel helicase, R 99.8 4.7E-18 1.2E-22 142.6 8.6 172 28-320 349-536 (769)
24 KOG2108 consensus 99.7 1.1E-18 2.9E-23 146.9 3.6 85 230-323 439-523 (853)
25 TIGR01447 recD exodeoxyribonuc 99.7 1.6E-16 4E-21 132.2 11.6 68 31-99 229-301 (753)
26 KOG1805 consensus 99.7 1.4E-16 3.6E-21 132.5 10.4 221 18-325 657-887 (1100)
27 pfam04257 Exonuc_V_gamma Exode 99.5 3.8E-12 9.8E-17 102.1 19.6 312 339-659 331-715 (1008)
28 PRK11069 recC exonuclease V su 99.5 4.7E-12 1.2E-16 101.5 19.1 309 340-659 370-753 (1122)
29 KOG1802 consensus 99.4 4.1E-12 1.1E-16 101.9 10.8 305 28-397 409-750 (935)
30 COG1330 RecC Exonuclease V gam 99.3 7.5E-10 1.9E-14 86.4 17.4 309 339-660 336-721 (1078)
31 TIGR02774 rexB_recomb ATP-depe 99.2 3.2E-07 8E-12 68.4 27.8 566 57-659 12-665 (1116)
32 KOG1807 consensus 99.1 4.1E-08 1E-12 74.4 16.7 79 29-107 378-459 (1025)
33 pfam02562 PhoH PhoH-like prote 98.7 2.8E-07 7.1E-12 68.7 10.5 51 28-80 3-54 (205)
34 COG3893 Inactivated superfamil 98.6 7E-06 1.8E-10 59.1 15.3 300 343-657 305-659 (697)
35 PRK10536 hypothetical protein; 98.4 1.9E-06 4.8E-11 63.0 9.0 52 27-80 57-109 (262)
36 COG0507 RecD ATP-dependent exo 98.4 9.7E-08 2.5E-12 71.9 0.7 63 31-93 203-272 (696)
37 PRK13889 conjugal transfer rel 98.2 1.1E-05 2.9E-10 57.7 7.8 44 574-632 660-703 (992)
38 TIGR00376 TIGR00376 DNA helica 98.2 0.00088 2.2E-08 44.7 17.4 78 28-107 201-281 (709)
39 PRK13826 Dtr system oriT relax 98.1 2.5E-05 6.4E-10 55.3 8.0 77 28-116 380-459 (1102)
40 TIGR02786 addB_alphas double-s 98.0 7.6E-05 1.9E-09 52.0 10.2 104 341-445 367-471 (1096)
41 PRK13709 conjugal transfer nic 97.7 0.00012 3E-09 50.8 6.4 88 18-115 957-1049(1756)
42 PRK05580 primosome assembly pr 97.6 0.00042 1.1E-08 46.9 8.0 78 28-112 167-248 (699)
43 pfam00270 DEAD DEAD/DEAH box h 97.6 0.00028 7.1E-09 48.2 6.6 76 31-107 1-77 (167)
44 COG1201 Lhr Lhr-like helicases 97.5 0.00038 9.7E-09 47.2 7.1 83 18-100 7-98 (814)
45 smart00487 DEXDc DEAD-like hel 97.5 0.00039 1E-08 47.1 6.7 73 28-102 7-81 (201)
46 pfam09848 DUF2075 Uncharacteri 97.5 0.00039 9.9E-09 47.1 6.3 56 268-323 118-176 (348)
47 COG1112 Superfamily I DNA and 97.4 0.00013 3.2E-09 50.5 3.3 83 232-323 488-577 (767)
48 pfam04851 ResIII Type III rest 97.3 0.0011 2.8E-08 44.0 7.5 63 29-95 3-66 (103)
49 PRK02362 ski2-like helicase; P 97.3 0.0033 8.4E-08 40.8 9.5 75 19-97 8-89 (736)
50 PRK08074 bifunctional ATP-depe 97.2 0.0076 1.9E-07 38.3 10.7 66 31-102 260-337 (932)
51 PRK11664 ATP-dependent RNA hel 97.2 0.0036 9.2E-08 40.5 8.5 66 32-103 11-76 (812)
52 TIGR02782 TrbB_P P-type conjug 97.1 0.0011 2.8E-08 44.1 5.5 33 234-271 111-146 (315)
53 COG1205 Distinct helicase fami 97.1 0.002 5.2E-08 42.2 6.8 81 29-111 70-153 (851)
54 COG1643 HrpA HrpA-like helicas 97.1 0.0068 1.7E-07 38.6 9.3 96 36-140 60-175 (845)
55 COG1198 PriA Primosomal protei 97.1 0.00085 2.2E-08 44.8 4.7 77 28-111 197-278 (730)
56 TIGR02768 TraA_Ti Ti-type conj 97.0 0.00093 2.4E-08 44.5 4.4 48 574-636 789-837 (888)
57 TIGR02768 TraA_Ti Ti-type conj 97.0 0.00026 6.7E-09 48.3 1.5 15 47-61 434-448 (888)
58 PRK13826 Dtr system oriT relax 97.0 0.00033 8.4E-09 47.6 1.9 44 574-632 696-739 (1102)
59 PRK13767 ATP-dependent helicas 97.0 0.005 1.3E-07 39.5 7.7 80 18-97 17-106 (878)
60 pfam01443 Viral_helicase1 Vira 97.0 3.3E-05 8.5E-10 54.5 -3.5 49 572-629 177-225 (226)
61 TIGR01420 pilT_fam twitching m 96.9 0.0015 3.7E-08 43.2 4.7 58 18-80 101-161 (350)
62 cd00268 DEADc DEAD-box helicas 96.9 0.0046 1.2E-07 39.8 7.0 82 28-109 20-103 (203)
63 TIGR01450 recC exodeoxyribonuc 96.9 0.038 9.8E-07 33.4 12.9 86 568-660 725-828 (1207)
64 KOG1806 consensus 96.9 0.04 1E-06 33.3 15.4 18 613-630 1224-1241(1320)
65 cd00046 DEXDc DEAD-like helica 96.9 0.0032 8E-08 40.9 5.9 55 45-101 2-56 (144)
66 COG1204 Superfamily II helicas 96.8 0.0052 1.3E-07 39.4 6.8 65 29-96 31-97 (766)
67 PRK13889 conjugal transfer rel 96.8 0.00045 1.1E-08 46.7 1.0 76 29-116 346-424 (992)
68 PRK05703 flhF flagellar biosyn 96.8 0.011 2.7E-07 37.3 8.0 12 93-104 16-27 (412)
69 PRK09694 hypothetical protein; 96.7 0.0098 2.5E-07 37.5 7.7 81 30-113 289-373 (878)
70 COG1702 PhoH Phosphate starvat 96.7 0.0031 7.9E-08 41.0 5.1 37 234-276 245-282 (348)
71 PRK00411 cdc6 cell division co 96.7 0.0051 1.3E-07 39.5 5.9 58 11-69 20-80 (394)
72 TIGR01970 DEAH_box_HrpB ATP-de 96.6 0.0081 2.1E-07 38.1 6.7 73 22-103 2-74 (858)
73 PRK13766 Hef nuclease; Provisi 96.6 0.0076 1.9E-07 38.3 6.5 69 29-100 15-83 (764)
74 PRK10590 ATP-dependent RNA hel 96.6 0.013 3.3E-07 36.7 7.6 70 29-98 23-98 (457)
75 PRK01297 ATP-dependent RNA hel 96.6 0.021 5.4E-07 35.2 8.4 77 30-107 107-191 (472)
76 PRK11192 ATP-dependent RNA hel 96.6 0.016 4.2E-07 36.0 7.9 90 19-108 10-108 (417)
77 KOG0952 consensus 96.5 0.015 3.9E-07 36.2 7.6 74 28-101 109-190 (1230)
78 TIGR00064 ftsY signal recognit 96.5 0.0034 8.6E-08 40.7 4.2 43 41-88 78-125 (284)
79 PRK12723 flagellar biosynthesi 96.5 0.018 4.5E-07 35.8 7.8 19 89-107 13-31 (388)
80 pfam05970 DUF889 PIF1 helicase 96.5 0.0013 3.4E-08 43.5 2.0 48 50-113 1-48 (418)
81 COG1061 SSL2 DNA or RNA helica 96.5 0.01 2.7E-07 37.3 6.5 65 29-100 36-105 (442)
82 COG4096 HsdR Type I site-speci 96.5 0.025 6.3E-07 34.8 8.4 108 29-138 165-296 (875)
83 PRK12898 secA preprotein trans 96.5 0.021 5.3E-07 35.3 7.9 55 349-406 467-521 (673)
84 PRK12724 flagellar biosynthesi 96.5 0.024 6E-07 34.9 8.1 13 92-104 15-27 (432)
85 smart00488 DEXDc2 DEAD-like he 96.4 0.032 8E-07 34.0 8.6 47 42-88 26-74 (289)
86 smart00489 DEXDc3 DEAD-like he 96.4 0.032 8E-07 34.0 8.6 47 42-88 26-74 (289)
87 PRK11448 hsdR type I restricti 96.4 0.04 1E-06 33.4 9.2 89 29-119 416-532 (1126)
88 PRK00254 ski2-like helicase; P 96.4 0.039 1E-06 33.4 9.1 75 19-97 8-90 (717)
89 PRK04837 ATP-dependent RNA hel 96.2 0.044 1.1E-06 33.0 8.3 80 19-98 16-107 (423)
90 KOG0926 consensus 96.2 0.017 4.2E-07 36.0 6.0 67 31-101 259-331 (1172)
91 PRK10436 hypothetical protein; 96.1 0.018 4.7E-07 35.6 6.1 16 44-59 22-37 (461)
92 COG4098 comFA Superfamily II D 96.1 0.041 1.1E-06 33.2 7.9 81 28-112 96-196 (441)
93 cd00009 AAA The AAA+ (ATPases 96.1 0.011 2.7E-07 37.3 4.8 32 37-69 13-44 (151)
94 pfam00437 GSPII_E Type II/IV s 96.1 0.01 2.6E-07 37.4 4.6 16 306-321 50-65 (283)
95 cd03115 SRP The signal recogni 96.1 0.022 5.6E-07 35.1 6.2 35 46-84 3-37 (173)
96 TIGR03015 pepcterm_ATPase puta 96.1 0.028 7E-07 34.4 6.7 41 234-274 125-166 (269)
97 COG2256 MGS1 ATPase related to 96.0 0.018 4.5E-07 35.8 5.6 96 13-113 13-117 (436)
98 PRK06995 flhF flagellar biosyn 96.0 0.046 1.2E-06 32.9 7.6 26 82-107 5-30 (404)
99 PRK11634 ATP-dependent RNA hel 95.9 0.053 1.3E-06 32.5 7.6 79 19-98 13-97 (629)
100 PRK11131 ATP-dependent RNA hel 95.9 0.036 9.2E-07 33.6 6.7 64 33-102 81-145 (1295)
101 KOG0738 consensus 95.9 0.0096 2.5E-07 37.6 3.7 14 368-381 206-219 (491)
102 KOG1803 consensus 95.9 0.00074 1.9E-08 45.2 -2.0 56 569-630 549-604 (649)
103 PRK11331 5-methylcytosine-spec 95.9 0.013 3.3E-07 36.7 4.3 12 46-57 33-44 (459)
104 pfam00448 SRP54 SRP54-type pro 95.8 0.033 8.4E-07 33.9 6.2 35 45-83 3-37 (196)
105 cd01130 VirB11-like_ATPase Typ 95.8 0.016 4E-07 36.1 4.6 39 16-63 7-45 (186)
106 PRK01172 ski2-like helicase; P 95.8 0.083 2.1E-06 31.2 8.2 75 19-97 8-87 (674)
107 PRK11776 ATP-dependent RNA hel 95.8 0.062 1.6E-06 32.0 7.6 78 19-97 11-94 (459)
108 cd01122 GP4d_helicase GP4d_hel 95.7 0.024 6.1E-07 34.9 5.2 52 42-97 28-80 (271)
109 PRK06731 flhF flagellar biosyn 95.7 0.024 6.1E-07 34.9 5.1 34 46-83 78-111 (270)
110 KOG0330 consensus 95.6 0.11 2.7E-06 30.4 8.1 69 28-98 82-152 (476)
111 TIGR00368 TIGR00368 Mg chelata 95.6 0.0072 1.8E-07 38.4 2.1 83 79-174 28-130 (505)
112 PTZ00110 helicase; Provisional 95.6 0.088 2.2E-06 31.0 7.6 68 30-97 205-277 (602)
113 PRK13833 conjugal transfer pro 95.6 0.035 9E-07 33.7 5.6 12 572-583 293-304 (323)
114 pfam06745 KaiC KaiC. This fami 95.6 0.033 8.4E-07 33.9 5.4 51 42-96 18-68 (231)
115 cd01124 KaiC KaiC is a circadi 95.5 0.031 8E-07 34.1 5.2 37 46-86 2-38 (187)
116 PRK13104 secA preprotein trans 95.5 0.13 3.4E-06 29.7 8.4 103 32-140 85-215 (896)
117 cd01129 PulE-GspE PulE/GspE Th 95.5 0.03 7.8E-07 34.1 5.0 38 29-66 63-103 (264)
118 PRK13407 bchI magnesium chelat 95.5 0.012 3.1E-07 36.9 2.9 27 41-68 27-53 (334)
119 KOG1804 consensus 95.4 0.0045 1.2E-07 39.8 0.7 38 47-87 143-180 (775)
120 COG1199 DinG Rad3-related DNA 95.4 0.097 2.5E-06 30.7 7.5 65 29-96 15-84 (654)
121 CHL00122 secA preprotein trans 95.4 0.17 4.3E-06 29.0 8.7 54 348-406 402-457 (891)
122 KOG1805 consensus 95.4 0.073 1.9E-06 31.6 6.8 57 571-633 998-1055(1100)
123 COG2805 PilT Tfp pilus assembl 95.4 0.038 9.6E-07 33.5 5.3 48 19-67 101-149 (353)
124 PRK04537 ATP-dependent RNA hel 95.3 0.088 2.3E-06 31.0 7.0 71 30-100 32-109 (574)
125 TIGR03158 cas3_cyano CRISPR-as 95.3 0.05 1.3E-06 32.7 5.6 56 36-99 7-63 (357)
126 pfam02399 Herpes_ori_bp Origin 95.3 0.058 1.5E-06 32.2 6.0 52 43-97 48-100 (829)
127 pfam05729 NACHT NACHT domain. 95.3 0.027 6.9E-07 34.5 4.2 30 45-75 2-31 (165)
128 pfam05970 DUF889 PIF1 helicase 95.2 0.0054 1.4E-07 39.3 0.5 35 573-621 384-418 (418)
129 PRK09302 circadian clock prote 95.2 0.052 1.3E-06 32.5 5.5 46 41-89 22-67 (501)
130 PRK12377 putative replication 95.2 0.058 1.5E-06 32.2 5.7 25 44-68 102-126 (248)
131 PRK12727 flagellar biosynthesi 95.1 0.15 3.8E-06 29.4 7.6 17 473-489 387-403 (557)
132 pfam10412 TrwB_AAD_bind Type I 95.1 0.033 8.3E-07 33.9 4.2 39 41-83 13-51 (386)
133 PRK03846 adenylylsulfate kinas 95.1 0.15 3.9E-06 29.3 7.6 43 29-72 10-52 (198)
134 pfam03796 DnaB_C DnaB-like hel 95.1 0.059 1.5E-06 32.2 5.4 52 43-98 18-70 (186)
135 pfam05876 Terminase_GpA Phage 95.1 0.16 4.2E-06 29.1 7.7 69 28-99 15-87 (552)
136 PRK12904 preprotein translocas 95.0 0.18 4.5E-06 28.9 7.7 52 349-405 409-462 (833)
137 PRK13341 recombination factor 95.0 0.084 2.1E-06 31.1 6.0 96 12-114 16-123 (726)
138 PRK06921 hypothetical protein; 95.0 0.12 3E-06 30.1 6.7 23 46-68 119-141 (265)
139 cd00984 DnaB_C DnaB helicase C 94.9 0.077 2E-06 31.4 5.7 52 43-98 12-64 (242)
140 PRK07261 topology modulation p 94.9 0.03 7.7E-07 34.2 3.6 62 46-112 3-70 (171)
141 TIGR01587 cas3_core CRISPR-ass 94.9 0.076 1.9E-06 31.4 5.6 63 46-111 2-71 (424)
142 COG0513 SrmB Superfamily II DN 94.9 0.14 3.5E-06 29.7 6.9 70 30-99 52-123 (513)
143 PRK06067 flagellar accessory p 94.9 0.07 1.8E-06 31.7 5.4 43 41-87 30-72 (241)
144 TIGR02538 type_IV_pilB type IV 94.9 0.028 7.2E-07 34.4 3.3 13 66-78 36-48 (577)
145 pfam07652 Flavi_DEAD Flaviviru 94.8 0.11 2.8E-06 30.3 6.2 46 47-96 6-52 (146)
146 TIGR02760 TraI_TIGR conjugativ 94.7 0.028 7.1E-07 34.4 3.1 70 25-94 1127-1203(2193)
147 KOG0731 consensus 94.7 0.053 1.4E-06 32.5 4.4 54 368-421 338-400 (774)
148 PRK04328 hypothetical protein; 94.7 0.075 1.9E-06 31.4 5.2 49 42-95 23-71 (250)
149 KOG0951 consensus 94.7 0.32 8.2E-06 27.1 8.3 73 28-101 308-390 (1674)
150 PRK09302 circadian clock prote 94.6 0.09 2.3E-06 30.9 5.4 14 112-125 40-53 (501)
151 pfam03266 DUF265 Protein of un 94.5 0.041 1E-06 33.3 3.5 29 45-74 1-29 (168)
152 KOG0920 consensus 94.5 0.18 4.5E-06 28.9 6.6 68 32-101 176-245 (924)
153 TIGR02173 cyt_kin_arch cytidyl 94.5 0.028 7.2E-07 34.4 2.5 14 46-59 3-16 (173)
154 COG0378 HypB Ni2+-binding GTPa 94.4 0.074 1.9E-06 31.5 4.6 52 48-108 18-72 (202)
155 cd01126 TraG_VirD4 The TraG/Tr 94.4 0.042 1.1E-06 33.2 3.3 33 45-83 1-33 (384)
156 PRK08118 topology modulation p 94.4 0.04 1E-06 33.3 3.2 66 45-112 3-71 (167)
157 TIGR00955 3a01204 Pigment prec 94.4 0.059 1.5E-06 32.2 4.0 153 44-259 58-225 (671)
158 PRK13768 GTPase; Provisional 94.3 0.05 1.3E-06 32.7 3.6 27 45-72 4-30 (253)
159 cd01120 RecA-like_NTPases RecA 94.3 0.11 2.8E-06 30.3 5.3 46 46-96 2-47 (165)
160 PRK07952 DNA replication prote 94.3 0.055 1.4E-06 32.4 3.8 13 46-58 99-111 (242)
161 COG1618 Predicted nucleotide k 94.3 0.047 1.2E-06 32.9 3.4 35 45-80 7-41 (179)
162 cd01127 TrwB Bacterial conjuga 94.3 0.061 1.5E-06 32.1 4.0 29 43-71 42-70 (410)
163 CHL00181 cbbX CbbX; Provisiona 94.3 0.061 1.6E-06 32.1 4.0 37 44-81 60-97 (287)
164 PRK00149 dnaA chromosomal repl 94.3 0.07 1.8E-06 31.6 4.3 30 223-253 200-232 (447)
165 COG0714 MoxR-like ATPases [Gen 94.3 0.049 1.3E-06 32.7 3.4 39 42-84 42-80 (329)
166 PRK10463 hydrogenase nickel in 94.3 0.071 1.8E-06 31.6 4.2 54 48-108 109-162 (290)
167 COG0593 DnaA ATPase involved i 94.2 0.26 6.7E-06 27.7 7.1 13 232-244 175-187 (408)
168 PRK05298 excinuclease ABC subu 94.2 0.31 7.8E-06 27.3 7.4 56 342-403 421-476 (657)
169 PRK06696 uridine kinase; Valid 94.2 0.11 2.8E-06 30.4 5.1 33 40-73 21-55 (227)
170 COG0467 RAD55 RecA-superfamily 94.2 0.13 3.3E-06 29.8 5.4 48 41-93 21-68 (260)
171 PRK08084 DNA replication initi 94.2 0.27 6.9E-06 27.6 7.0 60 17-84 23-82 (235)
172 COG1419 FlhF Flagellar GTP-bin 94.1 0.44 1.1E-05 26.2 8.1 25 80-104 3-27 (407)
173 KOG0354 consensus 94.1 0.2 5.2E-06 28.5 6.3 69 29-99 62-130 (746)
174 pfam01078 Mg_chelatase Magnesi 94.1 0.034 8.6E-07 33.9 2.3 28 40-68 19-46 (207)
175 CHL00176 ftsH cell division pr 94.1 0.061 1.6E-06 32.1 3.6 21 606-626 566-587 (631)
176 PRK07246 bifunctional ATP-depe 94.1 0.16 4.1E-06 29.2 5.7 58 31-94 247-310 (820)
177 PRK09270 frcK putative fructos 94.0 0.07 1.8E-06 31.6 3.8 31 41-72 30-62 (230)
178 COG1484 DnaC DNA replication p 94.0 0.23 5.9E-06 28.1 6.5 13 46-58 108-120 (254)
179 cd01131 PilT Pilus retraction 94.0 0.05 1.3E-06 32.7 3.0 24 44-67 2-25 (198)
180 COG0606 Predicted ATPase with 94.0 0.027 7E-07 34.5 1.7 23 78-100 18-40 (490)
181 COG4962 CpaF Flp pilus assembl 94.0 0.11 2.9E-06 30.3 4.8 23 307-329 85-107 (355)
182 COG0507 RecD ATP-dependent exo 94.0 0.058 1.5E-06 32.2 3.3 49 571-632 622-671 (696)
183 COG1875 NYN ribonuclease and A 93.9 0.071 1.8E-06 31.6 3.6 45 571-629 337-382 (436)
184 smart00382 AAA ATPases associa 93.9 0.057 1.4E-06 32.3 3.1 26 43-69 2-27 (148)
185 KOG0345 consensus 93.9 0.29 7.3E-06 27.5 6.7 70 28-97 27-101 (567)
186 pfam06414 Zeta_toxin Zeta toxi 93.8 0.08 2E-06 31.3 3.8 19 43-61 10-30 (191)
187 PRK08533 flagellar accessory p 93.8 0.15 3.8E-06 29.4 5.2 39 42-84 23-61 (230)
188 PRK13695 putative NTPase; Prov 93.8 0.075 1.9E-06 31.5 3.6 28 45-73 5-32 (174)
189 PRK01184 hypothetical protein; 93.8 0.12 3.1E-06 30.0 4.7 39 46-94 4-42 (183)
190 pfam03215 Rad17 Rad17 cell cyc 93.8 0.07 1.8E-06 31.7 3.4 18 44-61 45-63 (490)
191 PRK05595 replicative DNA helic 93.8 0.21 5.3E-06 28.4 5.8 34 368-401 195-234 (444)
192 pfam05496 RuvB_N Holliday junc 93.8 0.15 3.9E-06 29.4 5.1 50 16-70 16-72 (234)
193 cd02025 PanK Pantothenate kina 93.7 0.07 1.8E-06 31.7 3.3 34 47-82 3-36 (220)
194 TIGR03420 DnaA_homol_Hda DnaA 93.7 0.39 1E-05 26.5 7.1 42 37-82 32-73 (226)
195 COG0529 CysC Adenylylsulfate k 93.6 0.49 1.2E-05 25.9 7.5 67 29-97 9-86 (197)
196 TIGR03600 phage_DnaB phage rep 93.6 0.2 5E-06 28.6 5.5 33 369-401 189-227 (421)
197 PRK05506 bifunctional sulfate 93.6 0.37 9.5E-06 26.7 6.8 22 127-148 86-107 (613)
198 PRK05748 replicative DNA helic 93.6 0.19 5E-06 28.6 5.4 30 624-654 411-440 (448)
199 PRK02496 adk adenylate kinase; 93.5 0.57 1.5E-05 25.4 11.4 33 224-256 151-183 (185)
200 PRK00771 signal recognition pa 93.5 0.18 4.5E-06 28.9 5.1 42 46-89 100-141 (433)
201 pfam00485 PRK Phosphoribulokin 93.5 0.08 2E-06 31.3 3.3 32 46-78 2-33 (196)
202 TIGR00643 recG ATP-dependent D 93.5 0.55 1.4E-05 25.5 7.6 36 365-403 351-390 (721)
203 TIGR01967 DEAH_box_HrpA ATP-de 93.4 0.022 5.5E-07 35.2 0.3 60 31-102 74-140 (1320)
204 TIGR02881 spore_V_K stage V sp 93.4 0.08 2E-06 31.3 3.2 31 42-73 41-71 (261)
205 PRK08840 replicative DNA helic 93.3 0.19 4.9E-06 28.7 5.0 33 624-657 425-457 (464)
206 TIGR00631 uvrb excinuclease AB 93.3 0.6 1.5E-05 25.3 7.6 124 235-402 335-476 (667)
207 PRK09862 putative ATP-dependen 93.3 0.065 1.7E-06 31.9 2.6 20 82-101 36-55 (506)
208 COG1474 CDC6 Cdc6-related prot 93.3 0.093 2.4E-06 30.8 3.4 58 12-70 8-68 (366)
209 PRK08116 hypothetical protein; 93.3 0.11 2.9E-06 30.2 3.8 36 45-84 110-145 (262)
210 PRK06835 DNA replication prote 93.3 0.13 3.4E-06 29.8 4.1 12 236-247 99-110 (330)
211 PRK09401 reverse gyrase; Revie 93.3 0.59 1.5E-05 25.3 7.4 67 28-98 77-144 (1176)
212 COG4581 Superfamily II RNA hel 93.2 0.38 9.7E-06 26.6 6.5 72 22-97 112-184 (1041)
213 TIGR01241 FtsH_fam ATP-depende 93.2 0.058 1.5E-06 32.2 2.3 67 23-108 74-142 (505)
214 KOG0340 consensus 93.1 0.2 5.1E-06 28.5 4.9 84 31-117 31-117 (442)
215 pfam09848 DUF2075 Uncharacteri 93.1 0.2 5E-06 28.6 4.8 60 572-631 265-347 (348)
216 PRK09200 preprotein translocas 93.1 0.66 1.7E-05 25.0 11.3 55 348-405 410-464 (799)
217 COG5635 Predicted NTPase (NACH 93.1 0.078 2E-06 31.3 2.7 33 44-77 223-255 (824)
218 PRK13342 recombination factor 93.0 0.21 5.4E-06 28.4 4.8 72 18-96 7-83 (417)
219 pfam03029 ATP_bind_1 Conserved 92.9 0.067 1.7E-06 31.8 2.2 22 48-70 1-22 (234)
220 KOG0343 consensus 92.9 0.045 1.1E-06 33.0 1.3 79 29-115 91-173 (758)
221 KOG0991 consensus 92.9 0.18 4.5E-06 28.9 4.4 51 18-68 21-73 (333)
222 PRK04195 replication factor C 92.9 0.19 4.8E-06 28.7 4.5 42 17-60 7-57 (403)
223 PRK08694 consensus 92.7 0.3 7.6E-06 27.3 5.3 29 626-655 428-456 (468)
224 pfam02492 cobW CobW/HypB/UreG, 92.7 0.15 3.8E-06 29.4 3.7 34 45-83 1-35 (174)
225 PRK11889 flhF flagellar biosyn 92.7 0.6 1.5E-05 25.3 6.8 48 438-491 248-296 (436)
226 PRK08006 replicative DNA helic 92.7 0.3 7.6E-06 27.4 5.2 29 626-655 434-462 (471)
227 COG0237 CoaE Dephospho-CoA kin 92.6 0.39 9.8E-06 26.6 5.8 23 46-73 5-27 (201)
228 COG0563 Adk Adenylate kinase a 92.6 0.099 2.5E-06 30.6 2.7 97 45-150 2-104 (178)
229 PRK09183 transposase/IS protei 92.6 0.18 4.5E-06 28.9 4.0 12 46-57 104-115 (258)
230 PRK10867 signal recognition pa 92.6 0.25 6.4E-06 27.8 4.8 40 46-89 103-145 (453)
231 COG1112 Superfamily I DNA and 92.6 0.042 1.1E-06 33.2 0.8 58 569-631 670-727 (767)
232 PRK10865 protein disaggregatio 92.6 0.34 8.6E-06 27.0 5.4 68 44-112 200-283 (857)
233 KOG0922 consensus 92.6 0.29 7.3E-06 27.5 5.1 53 43-99 65-119 (674)
234 pfam03237 Terminase_6 Terminas 92.5 0.22 5.7E-06 28.2 4.4 46 47-94 1-46 (380)
235 PTZ00301 uridine kinase; Provi 92.5 0.18 4.5E-06 28.9 3.9 34 47-82 7-40 (210)
236 PRK07667 uridine kinase; Provi 92.4 0.16 4.2E-06 29.1 3.7 33 40-73 9-43 (190)
237 pfam04466 Terminase_3 Phage te 92.3 0.25 6.4E-06 27.9 4.5 40 46-88 5-44 (387)
238 PRK08506 replicative DNA helic 92.3 0.56 1.4E-05 25.5 6.2 33 369-401 188-225 (473)
239 PRK06904 replicative DNA helic 92.2 0.34 8.6E-06 27.0 5.1 29 626-655 433-461 (472)
240 pfam07726 AAA_3 ATPase family 92.2 0.13 3.4E-06 29.7 3.0 23 45-68 1-23 (131)
241 PRK08082 consensus 92.2 0.38 9.7E-06 26.6 5.3 29 625-654 411-439 (453)
242 pfam00004 AAA ATPase family as 92.2 0.11 2.8E-06 30.3 2.5 20 46-66 1-20 (131)
243 PRK12422 chromosomal replicati 92.2 0.27 6.8E-06 27.7 4.5 30 223-253 194-226 (455)
244 PTZ00112 origin recognition co 92.1 0.24 6.1E-06 28.0 4.2 14 78-91 90-103 (650)
245 KOG0925 consensus 92.1 0.79 2E-05 24.4 6.9 99 44-145 63-177 (699)
246 CHL00081 chlI Mg-protoporyphyr 92.1 0.13 3.3E-06 29.8 2.9 27 41-68 31-57 (347)
247 TIGR00176 mobB molybdopterin-g 92.1 0.19 4.7E-06 28.8 3.6 27 46-73 2-28 (165)
248 pfam01695 IstB IstB-like ATP b 92.1 0.26 6.7E-06 27.7 4.4 42 37-84 43-84 (178)
249 PRK08760 replicative DNA helic 92.1 0.42 1.1E-05 26.3 5.4 28 626-654 438-465 (476)
250 cd02028 UMPK_like Uridine mono 92.1 0.17 4.4E-06 28.9 3.5 27 46-73 2-28 (179)
251 CHL00095 clpC Clp protease ATP 92.0 0.44 1.1E-05 26.2 5.5 53 46-99 203-264 (823)
252 COG2019 AdkA Archaeal adenylat 92.0 0.16 4.2E-06 29.1 3.2 17 46-62 7-23 (189)
253 pfam01580 FtsK_SpoIIIE FtsK/Sp 92.0 0.25 6.3E-06 27.9 4.1 39 43-83 38-78 (202)
254 pfam07728 AAA_5 AAA domain (dy 91.9 0.17 4.3E-06 29.1 3.2 23 45-68 1-23 (139)
255 PRK06526 transposase; Provisio 91.9 0.33 8.4E-06 27.0 4.7 18 44-61 99-116 (254)
256 KOG0923 consensus 91.9 0.37 9.5E-06 26.7 4.9 65 32-102 271-337 (902)
257 PRK07004 replicative DNA helic 91.8 0.46 1.2E-05 26.0 5.3 35 368-402 207-247 (460)
258 PRK07263 consensus 91.8 0.48 1.2E-05 25.9 5.4 29 625-654 417-445 (453)
259 PRK08181 transposase; Validate 91.7 0.53 1.4E-05 25.6 5.6 14 387-400 60-73 (269)
260 PRK00300 gmk guanylate kinase; 91.7 0.26 6.5E-06 27.8 4.0 39 42-87 5-45 (208)
261 pfam05872 DUF853 Bacterial pro 91.7 0.96 2.4E-05 23.9 11.9 75 43-118 21-119 (504)
262 TIGR00073 hypB hydrogenase acc 91.7 0.26 6.7E-06 27.7 4.0 60 42-108 31-92 (225)
263 KOG1131 consensus 91.7 0.98 2.5E-05 23.8 9.5 64 41-105 33-104 (755)
264 PRK04841 transcriptional regul 91.7 0.13 3.3E-06 29.8 2.4 20 43-62 31-51 (903)
265 PRK13705 plasmid-partitioning 91.6 0.26 6.7E-06 27.7 3.9 38 43-84 103-145 (388)
266 cd01428 ADK Adenylate kinase ( 91.6 0.13 3.3E-06 29.8 2.4 19 46-65 2-20 (194)
267 PRK00440 rfc replication facto 91.6 0.38 9.7E-06 26.6 4.7 42 17-60 9-54 (318)
268 PRK05201 hslU ATP-dependent pr 91.6 0.17 4.3E-06 29.0 2.9 39 44-86 51-89 (442)
269 TIGR00602 rad24 checkpoint pro 91.5 0.12 3.2E-06 30.0 2.2 58 4-62 62-137 (670)
270 PRK12608 transcription termina 91.5 0.24 6.2E-06 28.0 3.7 68 291-382 156-227 (379)
271 TIGR03117 cas_csf4 CRISPR-asso 91.5 0.87 2.2E-05 24.1 6.5 55 30-94 7-65 (636)
272 KOG0924 consensus 91.4 0.56 1.4E-05 25.5 5.5 53 44-99 372-424 (1042)
273 PRK06321 replicative DNA helic 91.4 0.56 1.4E-05 25.4 5.5 12 369-380 221-232 (472)
274 PRK11747 dinG ATP-dependent DN 91.4 0.62 1.6E-05 25.2 5.6 46 44-93 48-94 (697)
275 TIGR02928 TIGR02928 orc1/cdc6 91.4 0.32 8.2E-06 27.1 4.2 50 11-60 5-60 (383)
276 PRK10733 hflB ATP-dependent me 91.4 0.14 3.7E-06 29.5 2.4 21 606-626 543-564 (644)
277 cd03114 ArgK-like The function 91.3 0.22 5.5E-06 28.3 3.2 33 47-83 3-35 (148)
278 COG1875 NYN ribonuclease and A 91.2 0.55 1.4E-05 25.5 5.2 13 391-403 238-250 (436)
279 PRK13853 type IV secretion sys 91.1 1.1 2.8E-05 23.4 10.8 11 265-275 321-331 (789)
280 PRK05342 clpX ATP-dependent pr 91.1 0.2 5E-06 28.6 2.9 16 425-440 310-325 (411)
281 TIGR03346 chaperone_ClpB ATP-d 91.1 0.53 1.4E-05 25.6 5.1 68 44-112 195-278 (852)
282 cd02023 UMPK Uridine monophosp 91.1 0.2 5.2E-06 28.5 2.9 31 46-82 2-32 (198)
283 TIGR01082 murC UDP-N-acetylmur 91.1 0.16 4.1E-06 29.2 2.4 32 47-79 109-141 (491)
284 pfam02534 TraG TraG/TraD famil 91.0 0.085 2.2E-06 31.1 0.9 35 43-83 44-78 (468)
285 pfam01443 Viral_helicase1 Vira 91.0 0.1 2.6E-06 30.6 1.3 41 233-279 60-100 (226)
286 PRK13764 ATPase; Provisional 90.9 0.57 1.5E-05 25.4 5.1 12 354-365 180-191 (605)
287 COG1203 CRISPR-associated heli 90.9 0.9 2.3E-05 24.1 6.1 74 31-105 197-276 (733)
288 COG4088 Predicted nucleotide k 90.9 0.27 6.8E-06 27.7 3.4 25 45-70 2-27 (261)
289 cd01128 rho_factor Transcripti 90.9 0.35 8.9E-06 26.9 4.0 26 42-68 15-40 (249)
290 PRK06749 replicative DNA helic 90.9 0.93 2.4E-05 24.0 6.1 33 369-401 181-218 (428)
291 TIGR02880 cbbX_cfxQ CbbX prote 90.8 0.47 1.2E-05 26.0 4.6 41 41-82 56-97 (284)
292 pfam02689 Herpes_Helicase Heli 90.8 0.42 1.1E-05 26.3 4.3 59 45-115 62-121 (801)
293 TIGR03345 VI_ClpV1 type VI sec 90.8 0.62 1.6E-05 25.1 5.2 68 44-112 209-292 (852)
294 TIGR00929 VirB4_CagE type IV s 90.8 0.36 9.1E-06 26.8 3.9 24 46-70 121-144 (931)
295 PRK00279 adk adenylate kinase; 90.7 0.17 4.4E-06 29.0 2.3 19 46-65 3-21 (215)
296 PRK04040 adenylate kinase; Pro 90.7 0.25 6.5E-06 27.8 3.1 18 45-62 4-21 (189)
297 cd01133 F1-ATPase_beta F1 ATP 90.5 1.2 3E-05 23.3 6.4 27 42-68 68-94 (274)
298 KOG0342 consensus 90.5 0.82 2.1E-05 24.3 5.6 71 28-99 103-178 (543)
299 TIGR03453 partition_RepA plasm 90.5 0.33 8.3E-06 27.1 3.5 41 43-87 101-145 (387)
300 PRK13869 plasmid-partitioning 90.4 0.35 8.9E-06 26.9 3.6 34 46-83 121-158 (405)
301 pfam01935 DUF87 Domain of unkn 90.4 0.39 9.9E-06 26.6 3.9 36 43-81 23-58 (218)
302 PRK05636 replicative DNA helic 90.4 0.79 2E-05 24.4 5.4 28 626-654 475-502 (507)
303 PRK06761 hypothetical protein; 90.3 0.36 9.3E-06 26.8 3.6 27 46-73 5-31 (281)
304 TIGR02982 heterocyst_DevA ABC 90.3 0.18 4.6E-06 28.8 2.1 22 44-66 31-53 (220)
305 PRK05480 uridine kinase; Provi 90.2 0.27 6.8E-06 27.7 2.9 34 44-83 5-40 (209)
306 KOG4284 consensus 90.1 0.15 3.8E-06 29.4 1.5 86 31-117 49-141 (980)
307 COG3911 Predicted ATPase [Gene 90.0 0.22 5.6E-06 28.3 2.3 18 45-62 11-28 (183)
308 PRK11034 clpA ATP-dependent Cl 90.0 0.69 1.7E-05 24.9 4.9 19 559-577 588-606 (758)
309 pfam01583 APS_kinase Adenylyls 90.0 1.1 2.7E-05 23.5 5.8 50 46-96 5-64 (157)
310 TIGR00635 ruvB Holliday juncti 89.9 0.27 6.8E-06 27.7 2.7 22 44-66 31-52 (305)
311 TIGR01081 mpl UDP-N-acetylmura 89.8 0.27 6.9E-06 27.6 2.7 30 47-77 104-134 (459)
312 KOG3347 consensus 89.8 0.31 8E-06 27.2 3.0 22 45-67 9-30 (176)
313 PRK12402 replication factor C 89.8 0.63 1.6E-05 25.1 4.5 27 230-256 123-150 (337)
314 PHA02519 plasmid partition pro 89.8 0.5 1.3E-05 25.8 4.0 40 43-86 103-147 (387)
315 KOG0350 consensus 89.8 0.85 2.2E-05 24.2 5.2 65 43-107 183-247 (620)
316 PRK13898 type IV secretion sys 89.7 0.39 9.9E-06 26.6 3.4 11 265-275 340-350 (800)
317 PTZ00088 adenylate kinase 1; P 89.7 0.24 6.1E-06 28.0 2.3 20 45-65 2-21 (225)
318 PRK09376 rho transcription ter 89.6 0.45 1.1E-05 26.1 3.7 68 291-382 193-264 (416)
319 COG0556 UvrB Helicase subunit 89.6 1.5 3.7E-05 22.6 7.4 56 342-403 421-476 (663)
320 pfam04665 Pox_A32 Poxvirus A32 89.6 0.45 1.1E-05 26.1 3.7 35 45-83 15-49 (241)
321 PRK06893 DNA replication initi 89.5 0.8 2E-05 24.4 4.9 44 16-64 16-60 (229)
322 PRK13765 ATP-dependent proteas 89.5 0.44 1.1E-05 26.2 3.5 45 34-81 36-85 (637)
323 TIGR01359 UMP_CMP_kin_fam UMP- 89.5 0.17 4.2E-06 29.1 1.4 35 46-94 2-36 (189)
324 PRK03839 putative kinase; Prov 89.4 0.3 7.7E-06 27.3 2.7 14 46-59 3-16 (180)
325 TIGR02524 dot_icm_DotB Dot/Icm 89.3 0.86 2.2E-05 24.2 4.9 29 250-282 52-80 (358)
326 TIGR00959 ffh signal recogniti 89.3 0.64 1.6E-05 25.1 4.3 45 43-89 100-148 (439)
327 TIGR01421 gluta_reduc_1 glutat 89.3 0.1 2.7E-06 30.5 0.2 18 46-65 5-22 (475)
328 cd02022 DPCK Dephospho-coenzym 89.2 0.35 8.9E-06 26.9 2.9 23 46-73 2-24 (179)
329 COG1855 ATPase (PilT family) [ 89.1 0.94 2.4E-05 23.9 5.0 10 355-364 185-194 (604)
330 KOG1802 consensus 89.1 0.36 9.1E-06 26.8 2.8 56 569-630 758-813 (935)
331 cd00544 CobU Adenosylcobinamid 89.0 0.38 9.7E-06 26.6 2.9 58 46-110 2-59 (169)
332 TIGR03574 selen_PSTK L-seryl-t 88.8 0.55 1.4E-05 25.5 3.7 25 46-71 2-26 (249)
333 KOG2028 consensus 88.8 1.1 2.9E-05 23.3 5.3 35 231-271 221-255 (554)
334 KOG1514 consensus 88.8 0.55 1.4E-05 25.5 3.6 11 77-87 49-59 (767)
335 TIGR00455 apsK adenylylsulfate 88.8 0.75 1.9E-05 24.6 4.3 43 29-73 5-48 (187)
336 TIGR01313 therm_gnt_kin carboh 88.7 0.36 9.3E-06 26.8 2.7 21 47-68 2-22 (175)
337 pfam02283 CobU Cobinamide kina 88.7 0.37 9.4E-06 26.7 2.7 58 46-110 1-58 (166)
338 PRK08233 hypothetical protein; 88.7 0.39 1E-05 26.5 2.8 19 47-66 7-25 (182)
339 KOG0734 consensus 88.7 0.49 1.3E-05 25.8 3.3 19 608-626 684-703 (752)
340 KOG0989 consensus 88.4 0.52 1.3E-05 25.7 3.3 21 42-62 55-76 (346)
341 pfam12340 DUF3638 Protein of u 88.4 0.6 1.5E-05 25.3 3.6 78 18-99 5-93 (229)
342 KOG1970 consensus 88.3 0.57 1.5E-05 25.4 3.5 17 45-61 112-128 (634)
343 PRK13830 conjugal transfer pro 88.1 0.55 1.4E-05 25.5 3.3 15 617-631 744-758 (818)
344 COG0541 Ffh Signal recognition 88.0 1.4 3.6E-05 22.8 5.3 38 133-172 22-59 (451)
345 KOG0335 consensus 87.9 1.6 4.2E-05 22.3 5.6 77 30-106 97-183 (482)
346 pfam00308 Bac_DnaA Bacterial d 87.8 0.86 2.2E-05 24.2 4.1 37 44-82 35-71 (219)
347 KOG0741 consensus 87.8 0.8 2E-05 24.4 3.9 55 325-389 389-444 (744)
348 PRK09361 radB DNA repair and r 87.8 0.76 1.9E-05 24.5 3.8 36 44-83 23-59 (224)
349 pfam00006 ATP-synt_ab ATP synt 87.8 0.6 1.5E-05 25.2 3.3 25 42-66 14-38 (213)
350 PRK08903 hypothetical protein; 87.8 1.9 4.9E-05 21.8 6.1 18 45-62 44-61 (227)
351 PRK06217 hypothetical protein; 87.8 0.54 1.4E-05 25.6 3.1 68 45-113 3-77 (185)
352 PRK09165 replicative DNA helic 87.8 1.3 3.4E-05 22.9 5.1 29 625-654 445-473 (484)
353 COG0572 Udk Uridine kinase [Nu 87.6 0.45 1.2E-05 26.1 2.6 30 47-82 12-41 (218)
354 PRK11545 gntK gluconate kinase 87.5 0.77 2E-05 24.5 3.7 19 41-59 5-24 (177)
355 pfam05707 Zot Zonular occluden 87.5 0.62 1.6E-05 25.2 3.2 25 46-70 3-28 (183)
356 cd02027 APSK Adenosine 5'-phos 87.5 1.8 4.7E-05 21.9 5.6 25 47-72 3-27 (149)
357 COG4889 Predicted helicase [Ge 87.4 1.2 2.9E-05 23.3 4.6 42 18-61 145-198 (1518)
358 TIGR02640 gas_vesic_GvpN gas v 87.4 0.54 1.4E-05 25.6 2.9 48 352-403 201-249 (265)
359 PRK08939 primosomal protein Dn 87.4 1.9 4.8E-05 21.8 5.6 19 384-402 172-190 (306)
360 COG1110 Reverse gyrase [DNA re 87.3 2 5.2E-05 21.6 7.3 67 29-99 82-149 (1187)
361 PRK06851 hypothetical protein; 87.3 0.59 1.5E-05 25.3 3.0 28 46-74 34-61 (368)
362 KOG1532 consensus 87.3 0.74 1.9E-05 24.6 3.5 65 227-323 110-174 (366)
363 KOG0328 consensus 87.3 0.24 6.2E-06 28.0 1.1 65 33-98 53-118 (400)
364 KOG0327 consensus 87.2 0.96 2.4E-05 23.9 4.1 66 31-97 50-116 (397)
365 COG5008 PilU Tfp pilus assembl 87.2 0.88 2.2E-05 24.1 3.9 10 429-438 238-247 (375)
366 KOG1533 consensus 87.2 0.25 6.4E-06 27.9 1.1 15 46-60 5-19 (290)
367 COG0523 Putative GTPases (G3E 87.2 0.69 1.8E-05 24.8 3.3 32 45-82 2-34 (323)
368 COG2255 RuvB Holliday junction 87.1 0.57 1.5E-05 25.4 2.9 24 44-68 53-76 (332)
369 KOG0333 consensus 87.1 1.5 3.9E-05 22.5 5.0 43 284-327 240-285 (673)
370 KOG0987 consensus 86.9 1.3 3.4E-05 22.9 4.6 74 23-113 111-191 (540)
371 PRK11608 pspF phage shock prot 86.6 1.2 3E-05 23.2 4.3 26 40-70 26-51 (325)
372 KOG0948 consensus 86.6 1.2 3.1E-05 23.2 4.3 67 12-82 104-179 (1041)
373 TIGR03348 VI_IcmF type VI secr 86.5 0.44 1.1E-05 26.2 2.0 17 46-62 114-130 (1169)
374 COG0610 Type I site-specific r 86.4 1.1 2.7E-05 23.6 3.9 70 46-119 276-368 (962)
375 PRK05800 cobU adenosylcobinami 86.4 0.71 1.8E-05 24.8 3.0 58 46-110 4-61 (170)
376 PRK05541 adenylylsulfate kinas 86.3 1 2.6E-05 23.7 3.8 26 46-72 10-35 (176)
377 PRK11537 putative GTP-binding 86.3 0.93 2.4E-05 23.9 3.6 33 44-82 4-37 (317)
378 cd04170 EF-G_bact Elongation f 86.3 0.82 2.1E-05 24.3 3.3 22 45-67 1-22 (268)
379 PRK13873 conjugal transfer ATP 86.2 0.92 2.3E-05 24.0 3.5 20 8-27 81-100 (815)
380 PRK00889 adenylylsulfate kinas 86.0 1.9 4.7E-05 21.9 5.0 26 46-72 7-32 (175)
381 TIGR02324 CP_lyasePhnL phospho 86.0 1.7 4.3E-05 22.2 4.8 101 43-156 33-143 (224)
382 cd01882 BMS1 Bms1. Bms1 is an 86.0 1.2 3E-05 23.2 4.0 25 46-70 42-66 (225)
383 PRK00080 ruvB Holliday junctio 86.0 0.74 1.9E-05 24.7 2.9 21 44-65 52-72 (328)
384 COG1158 Rho Transcription term 85.9 1.1 2.8E-05 23.5 3.8 67 291-381 197-267 (422)
385 cd01125 repA Hexameric Replica 85.8 1.3 3.4E-05 22.9 4.2 50 47-98 5-63 (239)
386 pfam03976 PPK2 Polyphosphate k 85.6 0.66 1.7E-05 25.0 2.5 62 22-91 10-73 (229)
387 cd01394 radB RadB. The archaea 85.6 1.1 2.8E-05 23.4 3.7 35 44-82 20-54 (218)
388 TIGR01360 aden_kin_iso1 adenyl 85.4 0.41 1E-05 26.4 1.4 32 46-91 6-37 (191)
389 PRK13891 conjugal transfer pro 85.3 1.2 3.1E-05 23.1 3.8 15 617-631 779-793 (852)
390 PRK13721 conjugal transfer ATP 85.3 1.4 3.7E-05 22.6 4.2 32 46-78 59-90 (864)
391 TIGR01425 SRP54_euk signal rec 85.1 0.41 1E-05 26.4 1.3 68 128-198 17-87 (453)
392 TIGR02858 spore_III_AA stage I 85.1 0.76 1.9E-05 24.5 2.7 21 305-325 97-117 (282)
393 cd03112 CobW_like The function 85.0 1.1 2.8E-05 23.5 3.4 32 45-82 1-33 (158)
394 COG0465 HflB ATP-dependent Zn 84.9 0.78 2E-05 24.5 2.7 24 605-628 537-561 (596)
395 pfam00071 Ras Ras family. Incl 84.8 0.81 2.1E-05 24.3 2.7 18 46-64 2-19 (162)
396 COG2909 MalT ATP-dependent tra 84.8 0.69 1.7E-05 24.9 2.3 21 44-64 38-58 (894)
397 PRK09280 F0F1 ATP synthase sub 84.7 1.3 3.3E-05 22.9 3.7 17 44-60 146-162 (466)
398 PRK00131 aroK shikimate kinase 84.6 0.96 2.5E-05 23.8 3.0 23 43-66 4-26 (175)
399 KOG0733 consensus 84.6 1.5 3.9E-05 22.4 4.1 13 46-58 226-238 (802)
400 COG1102 Cmk Cytidylate kinase 84.5 0.7 1.8E-05 24.8 2.2 13 47-59 4-16 (179)
401 pfam07724 AAA_2 AAA domain (Cd 84.4 1.2 3E-05 23.2 3.4 24 44-68 4-27 (168)
402 KOG0331 consensus 84.3 2.8 7.3E-05 20.6 5.7 67 30-96 114-186 (519)
403 PRK13946 shikimate kinase; Pro 84.3 1.7 4.4E-05 22.1 4.2 30 38-68 15-44 (195)
404 KOG3079 consensus 84.3 0.81 2.1E-05 24.4 2.5 19 46-65 11-29 (195)
405 PHA02244 ATPase-like protein 84.2 2 5E-05 21.7 4.4 39 291-329 174-212 (383)
406 TIGR02475 CobW cobalamin biosy 84.1 0.89 2.3E-05 24.1 2.6 31 46-82 7-37 (349)
407 TIGR02397 dnaX_nterm DNA polym 84.0 1.4 3.5E-05 22.8 3.6 31 229-259 113-144 (363)
408 pfam12128 DUF3584 Protein of u 84.0 1.3 3.4E-05 22.9 3.5 37 40-80 14-50 (1192)
409 PRK10490 sensor protein KdpD; 83.9 2.1 5.3E-05 21.6 4.5 54 42-96 21-76 (895)
410 pfam00158 Sigma54_activat Sigm 83.9 1.8 4.6E-05 22.0 4.1 19 40-58 19-37 (168)
411 COG1066 Sms Predicted ATP-depe 83.8 2 5.2E-05 21.6 4.4 46 44-95 93-139 (456)
412 PRK00081 coaE dephospho-CoA ki 83.7 1.1 2.8E-05 23.4 3.0 23 46-73 5-27 (199)
413 PRK05642 DNA replication initi 83.6 3 7.8E-05 20.4 6.6 35 44-82 46-80 (234)
414 TIGR00416 sms DNA repair prote 83.5 1.7 4.4E-05 22.1 3.9 72 20-100 79-154 (481)
415 COG3451 VirB4 Type IV secretor 83.5 2.1 5.2E-05 21.6 4.3 10 266-275 330-339 (796)
416 pfam00406 ADK Adenylate kinase 83.4 0.52 1.3E-05 25.7 1.2 17 48-65 1-17 (186)
417 TIGR02903 spore_lon_C ATP-depe 83.4 1.6 4.1E-05 22.3 3.7 23 235-257 269-292 (616)
418 KOG1969 consensus 83.3 1.4 3.5E-05 22.8 3.3 11 29-39 88-98 (877)
419 pfam10236 DAP3 Mitochondrial r 83.3 2 5E-05 21.7 4.1 36 44-85 24-59 (274)
420 TIGR03305 alt_F1F0_F1_bet alte 83.2 1.3 3.2E-05 23.0 3.1 17 267-283 199-216 (449)
421 PRK13531 regulatory ATPase Rav 83.1 1 2.7E-05 23.6 2.7 42 42-86 38-79 (498)
422 cd02024 NRK1 Nicotinamide ribo 83.0 1.1 2.7E-05 23.6 2.7 19 47-66 3-21 (187)
423 PRK10917 ATP-dependent DNA hel 83.0 3.2 8.2E-05 20.3 7.0 17 133-149 154-170 (677)
424 TIGR02546 III_secr_ATP type II 83.0 0.66 1.7E-05 25.0 1.6 33 43-82 153-185 (430)
425 COG1763 MobB Molybdopterin-gua 82.9 1.6 4.1E-05 22.3 3.6 27 46-73 5-31 (161)
426 COG1125 OpuBA ABC-type proline 82.9 0.8 2E-05 24.4 2.0 32 43-80 26-60 (309)
427 PRK08727 hypothetical protein; 82.8 2.6 6.7E-05 20.8 4.6 22 41-62 39-60 (233)
428 PRK00741 prfC peptide chain re 82.7 1.2 3.1E-05 23.1 2.9 23 43-66 10-32 (526)
429 PRK06305 DNA polymerase III su 82.6 3.3 8.5E-05 20.2 12.1 31 229-259 118-149 (462)
430 TIGR01242 26Sp45 26S proteasom 82.6 0.68 1.7E-05 24.9 1.6 14 568-581 296-309 (364)
431 PRK13700 conjugal transfer pro 82.6 1.8 4.5E-05 22.0 3.7 27 44-70 186-212 (732)
432 PRK00421 murC UDP-N-acetylmura 82.6 1 2.7E-05 23.6 2.5 25 44-73 9-33 (459)
433 PRK06620 hypothetical protein; 82.4 1 2.6E-05 23.7 2.4 17 44-60 45-61 (214)
434 TIGR03263 guanyl_kin guanylate 82.3 1.5 3.8E-05 22.5 3.2 35 46-87 4-38 (180)
435 TIGR01351 adk adenylate kinase 82.2 1.3 3.3E-05 22.9 2.9 19 46-65 2-20 (232)
436 PRK10751 molybdopterin-guanine 82.2 2.1 5.3E-05 21.6 3.9 27 45-72 3-30 (170)
437 PRK13947 shikimate kinase; Pro 82.2 1.6 4.2E-05 22.3 3.4 23 45-68 3-25 (171)
438 KOG2228 consensus 82.1 3.5 8.8E-05 20.0 6.2 30 36-66 43-72 (408)
439 pfam03205 MobB Molybdopterin g 82.1 2 5E-05 21.7 3.8 25 46-70 3-27 (122)
440 cd02026 PRK Phosphoribulokinas 82.1 1.2 3E-05 23.3 2.6 23 47-70 3-25 (273)
441 TIGR00348 hsdR type I site-spe 81.9 1.1 2.9E-05 23.4 2.5 17 611-628 759-775 (813)
442 PRK06547 hypothetical protein; 81.8 1.3 3.2E-05 23.0 2.7 23 42-65 11-36 (184)
443 cd01121 Sms Sms (bacterial rad 81.7 3.6 9.1E-05 20.0 6.4 52 44-101 82-134 (372)
444 COG3523 IcmF Type VI protein s 81.5 0.76 1.9E-05 24.5 1.5 17 46-62 128-144 (1188)
445 TIGR03575 selen_PSTK_euk L-ser 81.4 2 5E-05 21.7 3.6 35 47-85 3-38 (340)
446 PRK06315 type III secretion sy 81.3 2 5.2E-05 21.6 3.6 11 44-54 32-42 (442)
447 PRK05057 aroK shikimate kinase 81.2 1.1 2.9E-05 23.4 2.3 24 43-67 4-27 (172)
448 TIGR02902 spore_lonB ATP-depen 81.0 1.8 4.6E-05 22.0 3.3 32 35-71 78-109 (532)
449 PRK12597 F0F1 ATP synthase sub 81.0 2 5.1E-05 21.7 3.5 17 44-60 142-158 (459)
450 pfam00625 Guanylate_kin Guanyl 80.7 2 5.2E-05 21.6 3.4 37 44-87 2-39 (182)
451 COG1936 Predicted nucleotide k 80.7 0.97 2.5E-05 23.8 1.8 29 164-195 96-124 (180)
452 PRK07429 phosphoribulokinase; 80.6 1.4 3.4E-05 22.8 2.5 35 42-82 5-41 (331)
453 COG1224 TIP49 DNA helicase TIP 80.6 1.9 4.9E-05 21.8 3.3 25 43-68 65-89 (450)
454 pfam06068 TIP49 TIP49 C-termin 80.5 2 5E-05 21.7 3.3 24 44-68 51-74 (395)
455 PRK03731 aroL shikimate kinase 80.5 1.1 2.9E-05 23.3 2.1 23 44-67 3-25 (172)
456 KOG0347 consensus 80.5 3.9 1E-04 19.7 5.4 90 18-107 187-295 (731)
457 TIGR01085 murE UDP-N-acetylmur 80.4 1.9 4.9E-05 21.8 3.2 31 41-72 83-114 (494)
458 TIGR02237 recomb_radB DNA repa 80.4 2.3 5.9E-05 21.3 3.6 16 46-61 15-30 (223)
459 cd01136 ATPase_flagellum-secre 80.2 1.4 3.5E-05 22.8 2.4 20 42-61 68-87 (326)
460 cd02021 GntK Gluconate kinase 80.2 1.9 4.9E-05 21.8 3.2 14 46-59 2-15 (150)
461 PRK10787 DNA-binding ATP-depen 80.0 2.2 5.5E-05 21.4 3.4 11 263-273 348-358 (784)
462 TIGR01187 potA polyamine ABC t 80.0 0.63 1.6E-05 25.1 0.7 27 264-297 176-202 (331)
463 cd01886 EF-G Elongation factor 80.0 2 5.2E-05 21.6 3.2 21 45-66 1-21 (270)
464 TIGR03371 cellulose_yhjQ cellu 79.9 1.7 4.3E-05 22.2 2.8 29 52-84 11-39 (246)
465 KOG0780 consensus 79.8 2.2 5.7E-05 21.3 3.4 17 133-149 23-39 (483)
466 pfam02702 KdpD Osmosensitive K 79.6 2.4 6E-05 21.2 3.5 28 46-74 8-35 (211)
467 PRK12678 transcription termina 79.6 2.3 5.7E-05 21.3 3.4 22 535-556 636-657 (667)
468 cd03230 ABC_DR_subfamily_A Thi 79.6 1.7 4.3E-05 22.2 2.7 18 43-60 25-43 (173)
469 COG1797 CobB Cobyrinic acid a, 79.4 2.3 5.8E-05 21.3 3.3 27 45-72 1-29 (451)
470 TIGR00379 cobB cobyrinic acid 79.4 1.9 4.7E-05 21.9 2.9 31 47-77 2-35 (464)
471 pfam09140 MipZ ATPase MipZ. Mi 79.4 3.3 8.3E-05 20.2 4.1 36 45-84 1-38 (261)
472 COG3842 PotA ABC-type spermidi 79.3 1.3 3.3E-05 23.0 2.0 18 43-60 30-48 (352)
473 TIGR00750 lao LAO/AO transport 79.2 2 5.2E-05 21.6 3.0 38 41-82 33-73 (333)
474 COG0470 HolB ATPase involved i 79.1 3.9 0.0001 19.6 4.5 26 230-255 107-133 (325)
475 COG3598 RepA RecA-family ATPas 79.0 4.3 0.00011 19.4 5.2 71 8-83 58-135 (402)
476 PRK08356 hypothetical protein; 79.0 2 5E-05 21.7 2.9 34 46-89 8-41 (195)
477 TIGR00041 DTMP_kinase thymidyl 79.0 3 7.6E-05 20.5 3.8 33 46-85 5-38 (211)
478 cd04123 Rab21 Rab21 subfamily. 78.9 1.9 4.7E-05 21.9 2.8 20 46-66 3-22 (162)
479 pfam01121 CoaE Dephospho-CoA k 78.9 2 5.2E-05 21.6 3.0 24 46-74 3-26 (179)
480 TIGR00606 rad50 rad50; InterPr 78.6 1.4 3.5E-05 22.8 2.0 28 47-76 32-59 (1328)
481 TIGR02759 TraD_Ftype type IV c 78.5 2.3 5.9E-05 21.2 3.2 27 45-72 210-236 (613)
482 cd04169 RF3 RF3 subfamily. Pe 78.5 2.1 5.3E-05 21.6 2.9 21 45-66 4-24 (267)
483 cd03116 MobB Molybdenum is an 78.5 3.3 8.4E-05 20.2 3.9 26 46-71 4-29 (159)
484 PRK07773 replicative DNA helic 78.4 4.5 0.00012 19.2 6.3 52 42-97 201-253 (868)
485 KOG0390 consensus 78.3 4.6 0.00012 19.2 4.7 56 24-82 233-305 (776)
486 cd01861 Rab6 Rab6 subfamily. 78.3 2 5E-05 21.7 2.7 22 44-66 1-22 (161)
487 pfam08303 tRNA_lig_kinase tRNA 78.3 1.1 2.9E-05 23.4 1.5 14 49-62 5-18 (169)
488 smart00072 GuKc Guanylate kina 78.2 2.7 7E-05 20.7 3.5 34 44-84 3-37 (184)
489 PRK00141 murD UDP-N-acetylmura 78.2 2.2 5.5E-05 21.4 2.9 27 48-75 125-152 (476)
490 KOG0348 consensus 78.2 4.6 0.00012 19.2 6.8 75 27-101 157-237 (708)
491 TIGR00595 priA primosomal prot 78.0 4.4 0.00011 19.4 4.4 52 47-102 1-52 (524)
492 PRK01438 murD UDP-N-acetylmura 78.0 2.1 5.3E-05 21.6 2.8 27 48-75 124-151 (481)
493 PRK04308 murD UDP-N-acetylmura 77.9 2.1 5.4E-05 21.5 2.8 27 48-75 112-139 (445)
494 PRK13639 cbiO cobalt transport 77.7 3.6 9.2E-05 19.9 3.9 44 46-95 31-80 (275)
495 KOG1801 consensus 77.7 1.8 4.7E-05 21.9 2.5 50 570-628 731-783 (827)
496 PRK09281 F0F1 ATP synthase sub 77.7 2.4 6E-05 21.2 3.0 25 42-66 161-185 (502)
497 PRK09435 arginine/ornithine tr 77.7 3.7 9.5E-05 19.8 4.0 56 48-107 54-115 (325)
498 KOG0745 consensus 77.6 1.7 4.4E-05 22.1 2.3 48 18-68 203-250 (564)
499 cd02029 PRK_like Phosphoribulo 77.6 2.9 7.5E-05 20.5 3.5 63 46-110 2-64 (277)
500 cd01132 F1_ATPase_alpha F1 ATP 77.5 1.9 4.7E-05 21.9 2.4 25 42-66 68-92 (274)
No 1
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1308.76 Aligned_cols=626 Identities=39% Similarity=0.658 Sum_probs=589.6
Q ss_pred HHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC----
Q ss_conf 8762998899998538989669995889883589999999999808999788676211479999999999985164----
Q gi|254780952|r 26 YLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE---- 101 (685)
Q Consensus 26 ~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~---- 101 (685)
+|++||++|++||. |++||+||.||||||||.|||+||||||.+..|.|.+|||||||||||+||||||.+++|+
T Consensus 1 Ll~~LN~~Q~~AV~-tt~GPLLi~AGAGSGKTRVLThRIA~L~~e~~v~P~nILAiTFTNKAArEMkERv~~L~g~awaq 79 (811)
T TIGR01073 1 LLAGLNPEQREAVK-TTEGPLLIMAGAGSGKTRVLTHRIAHLLAEKNVAPWNILAITFTNKAAREMKERVEKLLGPAWAQ 79 (811)
T ss_pred CCCCCCHHHHHHHH-HCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 90102489999973-03784101013788731057899999997223698504655322053167899999985246654
Q ss_pred ---------------------------CCCEEEEHHHHHHHHHHHHHH----HCC--CCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf ---------------------------587896178999999998499----848--7989807289999999999999-
Q gi|254780952|r 102 ---------------------------KIPRIQTFHSFCASILRKHGE----VVG--LPTDFAILDSAESRTIIKQLLK- 147 (685)
Q Consensus 102 ---------------------------~~~~i~T~Hsf~~~il~~~~~----~~g--~~~~~~i~~~~~~~~~~~~~~~- 147 (685)
...|||||||.|-||||+... .+| +..+|+|+|..||..+++.+++
T Consensus 80 qefsqrwellGkyeqkqllsrvyk~~a~~~WisTFHS~cvRILRrdid~~qd~~Grr~~~~FsI~D~~Dq~~l~K~i~~~ 159 (811)
T TIGR01073 80 QEFSQRWELLGKYEQKQLLSRVYKDVAEDIWISTFHSMCVRILRRDIDKLQDRIGRRINRNFSIIDTSDQLSLMKDIVKK 159 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 57767888743466789999988652142323038999999888888889876211454157611178889999999744
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHH
Q ss_conf 73998547898999999866754158964612114653-899999999975577775300111000124543012-0688
Q gi|254780952|r 148 DLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQSSLTE-DAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHV 225 (685)
Q Consensus 148 ~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~-~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v 225 (685)
+.++|.++|+|+.+...||.|||.++.|+++.+.+.+. ..++++.+|..||+.|.+.+.|||||||+.+.+|++ .|+|
T Consensus 160 ~~dlD~Kkf~Pr~i~~~IS~~KN~l~~P~~~~~~a~~~P~~~~va~VY~~YQ~~L~~n~~LDFDDLIm~t~~LF~~~P~V 239 (811)
T TIGR01073 160 DKDLDPKKFEPRSILGTISNAKNELLSPEDFAKEATNYPFEKVVAEVYAEYQKQLLRNNALDFDDLIMTTINLFQRVPDV 239 (811)
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 20477777885012554676651478868999730688788899999999999987614784212777548988731799
Q ss_pred HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCC
Q ss_conf 9740122102532107751134688787751111---------2678875999953068863113322013455420576
Q gi|254780952|r 226 LKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKE---------DSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFK 296 (685)
Q Consensus 226 ~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~---------~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~ 296 (685)
+++||.||+||+||||||||.+||.|+++|+... ......|||||||.|||||||||||..||++|++|||
T Consensus 240 L~yYq~kF~yilvDEYQDTN~AQY~lv~~La~~~~E~~vdv~E~~~~~~nlcvVGDaDQSIY~wRGAdi~NIL~FEkDyp 319 (811)
T TIGR01073 240 LEYYQRKFQYILVDEYQDTNRAQYTLVRLLASRGEERQVDVSEADVRFRNLCVVGDADQSIYGWRGADITNILSFEKDYP 319 (811)
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHCCC
T ss_conf 99988407467773344435899999998601888763455535568664478728865500120101563320100132
Q ss_pred C-------CEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHH
Q ss_conf 6-------406787612675146787520244434320101222210235567448873155310000000013666531
Q gi|254780952|r 297 D-------ANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQNT 369 (685)
Q Consensus 297 ~-------~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~ 369 (685)
+ +++|.|++|||||+.|+.+||.||+||.+|.+|.||+.++.| .+|.++.+.++.+||++|+.+|.++.+.
T Consensus 320 ~rlldGetA~~i~LEQNYRST~~IL~AAN~VI~~N~~R~pK~LWT~~~~G--~~I~~Y~A~~E~dEA~Fv~~~I~~l~~~ 397 (811)
T TIGR01073 320 NRLLDGETATTILLEQNYRSTKNILQAANEVIEHNSNRKPKNLWTENSSG--EKITYYEADTERDEAQFVAGEIDKLRKN 397 (811)
T ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 31126763117763247521467999999998524788897300348899--6057872488101789999999998741
Q ss_pred C--CCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHH
Q ss_conf 1--36530311101001478899875202332032033-10001121028999998846630245753046875465024
Q gi|254780952|r 370 G--MSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKE 446 (685)
Q Consensus 370 g--~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~ 446 (685)
| ..++|||||||||+|++.+++.|.+.||||.++|| +||+|.||||+|||||++.||.|+.+|.||+|.|+||||+.
T Consensus 398 ~P~~~~~D~AiLYRTNAQSR~~EE~l~k~n~pY~iVGG~kFYdRkEIkD~LAYLR~~~Np~D~~sL~RIiNvPKRGiG~~ 477 (811)
T TIGR01073 398 GPELKYGDFAILYRTNAQSRVFEETLLKANIPYKIVGGLKFYDRKEIKDILAYLRVIANPDDDVSLERIINVPKRGIGAS 477 (811)
T ss_pred CCCHHHCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHH
T ss_conf 75100137038872672007899999864898066346102305779999999888617898833210123888764467
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCHH
Q ss_conf 66888878877398468999764104679977854334343335666531024660222333477709667885068845
Q gi|254780952|r 447 SLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSE 526 (685)
Q Consensus 447 ~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 526 (685)
++.++...+...++|+|+++......+.+..+..+.+..|.++|+.|.......++.++++.|++.+||.+.|+...+.+
T Consensus 478 s~~~~~~~a~~~~iS~~~Ai~~~~~i~~~~~ks~~~~~~F~~~~~~l~~~~~~~~~~e~~~~vL~~SgY~~mL~~~~t~e 557 (811)
T TIGR01073 478 SLEKIRSYALELNISLFEAIGEIDEIGTLAAKSANALLQFAEMIENLRQQQEFLSVTEVVEEVLDKSGYREMLKAEKTEE 557 (811)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 89999999986088888998788750235689999999999999999998600028899999851234078997407923
Q ss_pred HHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHCCC------CCCCEEEEEECCCCCCCCCEEE
Q ss_conf 58988843999999983026------------88999997576542211154------5893699961134556698369
Q gi|254780952|r 527 KSQERLDNLRELLSIIEKHE------------TLEGFVLQAPLRENLGSFIP------DSNCIQIMTLHAAKGLEFDTVF 588 (685)
Q Consensus 527 ~~~~~l~~l~~l~~~~~~~~------------sl~~fl~~~~~~~~~~~~~~------~~d~V~i~TIH~SKGLEfd~V~ 588 (685)
+..|++||.||+++..+|+ ++-+||..++|..+.+.... +.|+|+|||.|+|||||||+||
T Consensus 558 -a~~RlENl~E~~~v~~~Fe~~~~~Edpes~~~L~dFL~~~aL~~D~D~l~~~E~~~~Gdg~VtLMTLHaAKGLEFPVVF 636 (811)
T TIGR01073 558 -AQSRLENLDEFLSVTKEFEDESAEEDPESIKSLVDFLTDLALVSDLDDLEEEEEEAEGDGAVTLMTLHAAKGLEFPVVF 636 (811)
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEHHHHCCCCCCCCEEE
T ss_conf -4556899999999998453137766730033799999878765424433654011379964863134302567776256
Q ss_pred ECCCCCCCCCCHHCCC---HHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCH
Q ss_conf 8468576684221299---67878999999999858641169983132112576543335556888723314783
Q gi|254780952|r 589 ISGWEQGLLPHQLSIN---EGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYDP 660 (685)
Q Consensus 589 i~gl~~g~~P~~~~~~---~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El~~~ 660 (685)
|+||+||+|||.|+++ +.++||||||+|||+|||++.||||.+.+|...|. .+.+.|||||.|+|++
T Consensus 637 L~GlEeG~FPh~RsL~~~d~~~lEEERRLAYVGITRA~~~LyLT~A~~R~lfG~-----~~~~~PSRFl~EIP~~ 706 (811)
T TIGR01073 637 LIGLEEGVFPHSRSLMEDDEKELEEERRLAYVGITRAEEELYLTHATSRTLFGR-----IQMNPPSRFLNEIPDE 706 (811)
T ss_pred ECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC-----CCCCCCCCCHHCCCHH
T ss_conf 548765567213404767811356788888666554431000100334253223-----3689875423308977
No 2
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1211.16 Aligned_cols=617 Identities=37% Similarity=0.562 Sum_probs=572.2
Q ss_pred HCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC---CC
Q ss_conf 629988999985389896699958898835899999999998089997886762114799999999999851645---87
Q gi|254780952|r 28 KGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEK---IP 104 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~---~~ 104 (685)
..|||.|++||.+ .+|||||+||||||||.|+|+||+|||.++|..|++|+|||||||||+|||+|+++.|+.. +.
T Consensus 2 ~~LNp~Q~~AV~Y-~~GPlLVLAGAGSGKT~VI~~KIayLi~~cgY~a~~IaAvTFTNKAA~EMkERVA~~L~~~~~~GL 80 (677)
T TIGR01074 2 SKLNPQQQEAVEY-VGGPLLVLAGAGSGKTRVITNKIAYLIQNCGYKAKNIAAVTFTNKAAREMKERVAKTLGKGQAKGL 80 (677)
T ss_pred CCCCHHHHHHHHH-HCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8887437999986-158714651777786357888999987515878761689735237779999999852265455854
Q ss_pred EEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCC
Q ss_conf 89617899999999849984879898072899999999999997399854789899999986675415896461211465
Q gi|254780952|r 105 RIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQSSLT 184 (685)
Q Consensus 105 ~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 184 (685)
.|||||++++.|||+-...+|++++|+|+|+.|+..++++++.+.- +...--...+...||.|||.+++|++....+.+
T Consensus 81 ~isTFH~LGL~Ii~~E~~~lG~K~nFSlFD~~D~~all~eL~~~~~-~~d~~~l~~~~~~IS~WKNdl~tP~qa~~~A~~ 159 (677)
T TIGR01074 81 TISTFHTLGLKIIRREHNALGLKSNFSLFDETDQLALLKELLEGEL-KADKDLLDKLKSTISNWKNDLLTPEQALASARN 159 (677)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 4752057338999999986488999642067889999998752331-142489999999863654114790899998517
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 3899999999975577775300111000124543012-068897401221025321077511346887877511112678
Q gi|254780952|r 185 EDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQ 263 (685)
Q Consensus 185 ~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~ 263 (685)
.....++.+|..|+..|+..|++||||||..++.||+ +++|+.+||.|++|+|||||||||.+||+|+++|++.
T Consensus 160 ~~e~~~A~~Y~~Y~~~L~~yNalDFDDLI~lP~~LL~~n~~V~~~WQ~kirYLLVDEyQDTN~sQY~L~KlLv~~----- 234 (677)
T TIGR01074 160 EREQTFAHVYARYQATLRAYNALDFDDLILLPVLLLQQNEEVRNKWQNKIRYLLVDEYQDTNTSQYELVKLLVGD----- 234 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC-----
T ss_conf 668999999999999987707754223788999985149789999885322001102345117999998875188-----
Q ss_pred CCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC
Q ss_conf 87599995306886311332201345542057664067876126751467875202444343201012222102355674
Q gi|254780952|r 264 GARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAK 343 (685)
Q Consensus 264 ~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~ 343 (685)
.+++|||||||||||+||||.|+|+..+.+|||..++|.|++||||+.-|+.+||.||+||++-+.|.|+|.-+. |.+
T Consensus 235 r~~FT~VGDDDQSIYsWRGA~peNL~~L~~DfP~LKvIKLEQNYRS~~RILkaAN~LI~NNpH~F~K~LfS~l~~--Ge~ 312 (677)
T TIGR01074 235 RGNFTVVGDDDQSIYSWRGARPENLVLLKEDFPQLKVIKLEQNYRSTSRILKAANILIANNPHVFEKKLFSELGE--GEK 312 (677)
T ss_pred CCCEEEECCCCCCHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCC--CCE
T ss_conf 853567415654243231667788989861586441650000666646699997677622742000000010016--981
Q ss_pred EEEEECCCCCHHCCCCCHHHHH--HHH-HCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHHHH
Q ss_conf 4887315531000000001366--653-1136530311101001478899875202332032033-10001121028999
Q gi|254780952|r 344 VSIHVSQSDNSELSTIIQEIIN--IQN-TGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAY 419 (685)
Q Consensus 344 v~~~~~~~~~~Ea~~Ia~~I~~--l~~-~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~lla~ 419 (685)
+.++.|.|+++||++|+.+|.. +.+ ...+|+|.|||||.|+|++.++..|....|||.+.|| |||+++||||+|||
T Consensus 313 ~kVi~~~NE~hEAEri~~ei~~~~~~~~~~~~Y~DyAILYRGNhQsr~lEk~L~~~rIPY~lSGGtSFF~R~EiKDllsY 392 (677)
T TIGR01074 313 IKVIECRNEEHEAERIAGEIIAHKLIDAKKTQYKDYAILYRGNHQSRLLEKALQQNRIPYKLSGGTSFFSRAEIKDLLSY 392 (677)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHCEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHH
T ss_conf 78885178631689999999999744687463010002313125458999998626898253577143464037778887
Q ss_pred HHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99884663024575304687546502466888878877398468999764104679977854334343335666531024
Q gi|254780952|r 420 FRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKK 499 (685)
Q Consensus 420 Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 499 (685)
||+++||.|+.||.|+++.|+|+||.+||.+|..+|..+++|++++..+..-...+..+..+.|++|..++..+......
T Consensus 393 lRLlvNPDDD~AFLRivn~PkReIG~aTL~KL~~~A~~~~~Slf~A~~~~gl~~~L~~r~~~~L~~F~~wl~~i~~~~~~ 472 (677)
T TIGR01074 393 LRLLVNPDDDAAFLRIVNTPKREIGSATLEKLGEYAAEKNKSLFEASFELGLLQTLSGRAYEKLQRFTDWLVEIRRQAER 472 (677)
T ss_pred HHHHCCCCCCHHHHCEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65313799883420012589887430568889999974079788998776489851365788899999999999998740
Q ss_pred CCCHHHHHHHHHHCCCHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHHHHHHC---C
Q ss_conf 66022233347770966788506884558-98884399999998302--------6--889999975765422111---5
Q gi|254780952|r 500 MDPAPIANMILEQSGYMAMWKNNKSSEKS-QERLDNLRELLSIIEKH--------E--TLEGFVLQAPLRENLGSF---I 565 (685)
Q Consensus 500 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~~~~~~~--------~--sl~~fl~~~~~~~~~~~~---~ 565 (685)
..+..+++.++..++|..++......+.+ ..++.||.+|.+++.+. . ++.+.+..+.+++.++.. .
T Consensus 473 ~e~~~~vr~l~~~i~YE~~L~~~~~~~k~~e~r~~NV~~L~~W~~~~L~~~e~~~~~m~l~~~v~~ltLrd~lEr~~e~e 552 (677)
T TIGR01074 473 SEPIEAVRSLVEDIDYENWLYENSESPKAAEMRMKNVEDLFSWLKEMLEGDEEDGPEMNLEQVVQRLTLRDMLERKIEEE 552 (677)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 38589999999861377898852578114677686699999999998417888852346899999998754641776454
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCC
Q ss_conf 45893699961134556698369846857668422129967878999999999858641169983132112576543335
Q gi|254780952|r 566 PDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERY 645 (685)
Q Consensus 566 ~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~ 645 (685)
++.|+|++||.|+|||||||+|||+||+||++||..|++++++||||||+||||||||+.|++|+|.+|+.+|..
T Consensus 553 ~~~d~VqLMTLHASKGLEFpYVf~~G~EEGiLPH~~SIeedNveEERRL~YVGITRA~~~L~~t~c~~RrqyGe~----- 627 (677)
T TIGR01074 553 EESDQVQLMTLHASKGLEFPYVFLIGMEEGILPHQSSIEEDNVEEERRLAYVGITRAKKELTFTYCKERRQYGEL----- 627 (677)
T ss_pred CCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-----
T ss_conf 777520134655102455631156634666488755444676016777664433699999999999999756852-----
Q ss_pred CCCCCCCHHHHCC
Q ss_conf 5568887233147
Q gi|254780952|r 646 QPSQVSQFLLELY 658 (685)
Q Consensus 646 ~~~~~SrFl~El~ 658 (685)
....|||||.|||
T Consensus 628 ~~~~PSRFl~ELP 640 (677)
T TIGR01074 628 VRPEPSRFLDELP 640 (677)
T ss_pred ECCCCCCCCCCCC
T ss_conf 0557774100379
No 3
>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1207.55 Aligned_cols=620 Identities=38% Similarity=0.629 Sum_probs=591.6
Q ss_pred HHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC--CC-
Q ss_conf 876299889999853898966999588988358999999999980899978867621147999999999998516--45-
Q gi|254780952|r 26 YLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG--EK- 102 (685)
Q Consensus 26 ~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~--~~- 102 (685)
+|.+||++|++||.++. ++.||+||||||||.|||+||+||+..+++++.+|.++|||||||.||+.||...+. ..
T Consensus 1 lLd~LN~~QreaVaap~-~~~LvLAGAGSGKTRVL~hRIaWL~~v~~~s~~SiMAVTFTNKAA~Em~~Ri~~~~~~~~~~ 79 (741)
T TIGR01075 1 LLDGLNDKQREAVAAPP-GNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIEALLRKSARH 79 (741)
T ss_pred CCCCCCHHHHHHHCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96556657788740342-25548730688850247888998874078998535632003478999999999986201143
Q ss_pred ---CCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf ---87896178999999998499848798980728999999999999973998547898999999866754158964612
Q gi|254780952|r 103 ---IPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIP 179 (685)
Q Consensus 103 ---~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~ 179 (685)
+|+||||||+|-||||-|+...+||.+|.|+|..||.+|++++++.++++++.|+|+++.-+|+.-|++|+.|..+.
T Consensus 80 ~l~gMW~GTFHglaHRlLR~Hh~Da~LP~~FQilDs~DQlrL~KRlik~~n~~e~~~pPrq~~W~IN~qKdeGlRp~~i~ 159 (741)
T TIGR01075 80 QLFGMWIGTFHGLAHRLLRAHHLDAGLPEDFQILDSDDQLRLIKRLIKSLNLDEKQFPPRQAMWYINNQKDEGLRPEHIE 159 (741)
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCHHHCC
T ss_conf 25553230577899999986675346861242364065799999999863876333671344201036656788832357
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 114653899999999975577775300111000124543012-0688974012210253210775113468878775111
Q gi|254780952|r 180 QSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQK 258 (685)
Q Consensus 180 ~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~ 258 (685)
....++..+...+||..|++.+.+.|++||..||+++++||+ +|.++.+||+||.|||||||||||.+||.+|++||+.
T Consensus 160 ~~~~d~~~~~~~~~Y~~Yq~~C~RaGlVDFAELLLRa~ELl~~~~~~l~hY~~RF~~ILvDEFQDTN~iQYaw~rllAg~ 239 (741)
T TIGR01075 160 AFDNDPVERTWIKIYAEYQEACDRAGLVDFAELLLRAYELLRNKPHILQHYQERFKHILVDEFQDTNKIQYAWIRLLAGE 239 (741)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 76777689999999999875306377345899999999975289589999987610054323245006999999996089
Q ss_pred CCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCC
Q ss_conf 12678875999953068863113322013455420576640678761267514678752024443432010122221023
Q gi|254780952|r 259 EDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDC 338 (685)
Q Consensus 259 ~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~ 338 (685)
+ ++||+||||||||||||||.++++..|.++||...+|.|++||||+.+|+++||.||++|.+|++|.|+|....
T Consensus 240 ~-----~~V~~VGDDDQsIYgwRGA~veni~~fl~dF~~~~tirLEQNYRS~~nIL~AAN~lIanN~~RlGK~LwT~g~~ 314 (741)
T TIGR01075 240 T-----GNVMIVGDDDQSIYGWRGAQVENIQKFLKDFPIAETIRLEQNYRSTANILAAANALIANNDERLGKNLWTDGEV 314 (741)
T ss_pred C-----CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
T ss_conf 9-----63798855874201245764188899997467888534200322178899998899852886567530134567
Q ss_pred CCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHH
Q ss_conf 5567448873155310000000013666531136530311101001478899875202332032033-100011210289
Q gi|254780952|r 339 HDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDAL 417 (685)
Q Consensus 339 ~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~ll 417 (685)
| .+|.++..-++-+||++|+++|+.+.+.|..+.|||||||+|+|++.|+++|.+.+|||+|+|| +||||.||||.|
T Consensus 315 G--e~i~~YsAfneLdEArFvv~~~~~w~~~GG~l~e~AvLYRsNAQSRv~Ee~L~~~~iPYriYGG~RFFERqEIKdAL 392 (741)
T TIGR01075 315 G--EPISLYSAFNELDEARFVVSRIKAWQREGGALDEIAVLYRSNAQSRVLEEALLRASIPYRIYGGMRFFERQEIKDAL 392 (741)
T ss_pred C--CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHH
T ss_conf 8--70257651341378999999999998658964136566325524689999997448980430786325678899999
Q ss_pred HHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998846630245753046875465024668888788773984689997641046799778543343433356665310
Q gi|254780952|r 418 AYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCS 497 (685)
Q Consensus 418 a~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 497 (685)
||||++.||.|+.||.||+|.|.||||+.|++.|...+.++++++|++.........+..+...+|..|+++|+.+....
T Consensus 393 aYLRL~~Nr~DDaAfeRViNtP~RGiG~rTld~~r~~~r~~g~tLWqA~~~~~q~~~Lagra~~al~~F~~Li~~L~~~~ 472 (741)
T TIGR01075 393 AYLRLIANRNDDAAFERVINTPTRGIGDRTLDEVRQAARERGLTLWQAAVELLQEKVLAGRAASALVRFVELIEALAEET 472 (741)
T ss_pred HHHHHHCCCCCCCHHCCEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987148875303203004888987546799999876520741899999987633679999999999999999998755
Q ss_pred CCCCCHHHHHHHHHHCCCHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCC--------------------CHHHHHHHHH
Q ss_conf 24660222333477709667885068-84558988843999999983026--------------------8899999757
Q gi|254780952|r 498 KKMDPAPIANMILEQSGYMAMWKNNK-SSEKSQERLDNLRELLSIIEKHE--------------------TLEGFVLQAP 556 (685)
Q Consensus 498 ~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~l~~l~~l~~~~~~~~--------------------sl~~fl~~~~ 556 (685)
..+++...++.++..+|+...|+..+ ..++++.|++||.||++.+.+|. .+..||.+.+
T Consensus 473 ~~m~L~~~~d~~~k~SgL~~~Y~~ekrgg~~~~~R~eNLeELV~at~~F~peds~fe~~p~n~~d~P~~~~l~AFLs~aa 552 (741)
T TIGR01075 473 ADMPLHEQTDHVLKDSGLREMYQQEKRGGEKGQARIENLEELVTATREFKPEDSNFEILPENAEDDPIMTELTAFLSHAA 552 (741)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 31446888999985003678999972146432357778899998873046464543326777677730334778877887
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCH-HHHHHHHHHHHHHHHHHHHEEEEEECCCCC
Q ss_conf 6542211154589369996113455669836984685766842212996-787899999999985864116998313211
Q gi|254780952|r 557 LRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINE-GNVEGERRLAYVGITRAKKKCHLFYTINRR 635 (685)
Q Consensus 557 ~~~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~-~~~eEErRL~YVA~TRAk~~L~l~~~~~~~ 635 (685)
+....++..+..++|++||+|+|||||||.|||+||++|.|||.+|++| +.+||||||.|||||||+++|+|||+..|+
T Consensus 553 LEaGe~qa~~~~~aVqLMTlHsAKGLEFp~VFlvG~EeG~FPS~~Sl~E~GrLEEERRL~YVgiTRA~~kL~ityAe~Rr 632 (741)
T TIGR01075 553 LEAGEGQADAGEDAVQLMTLHSAKGLEFPLVFLVGMEEGLFPSQMSLDERGRLEEERRLAYVGITRARKKLTITYAEARR 632 (741)
T ss_pred HHCCCHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64150010101235466665632024557524662026778311210348695278888989978775665576886456
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 25765433355568887233147
Q gi|254780952|r 636 THDFTRVERYQPSQVSQFLLELY 658 (685)
Q Consensus 636 ~~~~~~~~~~~~~~~SrFl~El~ 658 (685)
.|+.... ..||||+.|||
T Consensus 633 LyGk~~y-----~~pSRFi~ElP 650 (741)
T TIGR01075 633 LYGKEEY-----HIPSRFIRELP 650 (741)
T ss_pred HHHHCCC-----CCCCCHHHHCC
T ss_conf 6310026-----88741143065
No 4
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=100.00 E-value=0 Score=1147.18 Aligned_cols=623 Identities=38% Similarity=0.610 Sum_probs=567.6
Q ss_pred CCHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 21588876299889999853898966999588988358999999999980899978867621147999999999998516
Q gi|254780952|r 21 SCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG 100 (685)
Q Consensus 21 ~~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~ 100 (685)
+.++.+|++||++|++||. +.+||++|+||||||||+||++||+|||.+++++|++|||||||||||+||++||.++++
T Consensus 1 m~~~~~l~~LN~~Q~~AV~-~~~g~~lV~AGaGSGKT~vL~~Ria~Li~~~gv~p~~ILalTFTnkAA~Emk~Rl~~~l~ 79 (722)
T PRK11773 1 MDVSYLLDSLNDKQREAVA-APLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSILAVTFTNKAAAEMRHRIEQLLG 79 (722)
T ss_pred CCHHHHHHHCCHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9878997826999999980-999987999738715999999999999982999878828984589999999999998717
Q ss_pred CCC--CEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 458--789617899999999849984879898072899999999999997399854789899999986675415896461
Q gi|254780952|r 101 EKI--PRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDI 178 (685)
Q Consensus 101 ~~~--~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~ 178 (685)
... ++|+||||||++|||+|+...|++++|+|+|+.++..+++++++.++++.+.++++.+..+|+.+|+.++.|+++
T Consensus 80 ~~~~~~~i~TfHSfc~~iLr~~~~~~g~~~~f~I~d~~d~~~l~k~~~~~~~~d~~~~~~~~~~~~i~~~k~~~~~p~~~ 159 (722)
T PRK11773 80 TSQGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQLRLLKRLIKALNLDEKQWPPRQAQWYINGQKDEGLRPQHI 159 (722)
T ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 77788889729999999999969983989998787689999999999997699800088999999987776548998897
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2114653899999999975577775300111000124543012-068897401221025321077511346887877511
Q gi|254780952|r 179 PQSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQ 257 (685)
Q Consensus 179 ~~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~ 257 (685)
.... ....+....+|..|++.|++.|++||+||+..++++|+ +|++++.|++||+|||||||||||++|++||++|++
T Consensus 160 ~~~~-~~~~~~~~~iy~~Y~~~~~~~~~lDFdDll~~~~~ll~~~~~v~~~~~~rf~~IlVDEfQDtn~~Q~~ll~~La~ 238 (722)
T PRK11773 160 QAYG-DPVEQTWLKIYQAYQEACDRAGLVDFAELLLRAHELWLDKPHILQHYQERFRHILVDEFQDTNAIQYAWIRLLAG 238 (722)
T ss_pred HHCC-CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 6558-989999999999999999876998889999999998621999999998539799997723599999999998617
Q ss_pred CCCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCC
Q ss_conf 11267887599995306886311332201345542057664067876126751467875202444343201012222102
Q gi|254780952|r 258 KEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRD 337 (685)
Q Consensus 258 ~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~ 337 (685)
. +++||+|||||||||+||||+|++|.+|.++||+++++.|++||||+++|+++||.+|.+|++|++|.+++..+
T Consensus 239 ~-----~~nl~vVGD~dQSIY~FRGA~~~~i~~f~~~f~~~~~i~L~~NyRSt~~Il~~an~li~~n~~r~~k~l~~~~~ 313 (722)
T PRK11773 239 D-----TGNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAETIRLEQNYRSTANILKAANALIANNSGRLGKELWTDGG 313 (722)
T ss_pred C-----CCCEEEEECCCHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 8-----97289996740211333056367899998744776278614441666579999999986324555550024577
Q ss_pred CCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHH
Q ss_conf 35567448873155310000000013666531136530311101001478899875202332032033-10001121028
Q gi|254780952|r 338 CHDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDA 416 (685)
Q Consensus 338 ~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~l 416 (685)
++.++.++.+.++.+|+.+|+++|.+++++|.+|+|||||+|+|+++..++++|.++||||++.|| +||+++||+++
T Consensus 314 --~g~~i~~~~~~~~~~Ea~~Ia~~I~~~~~~g~~~~diAIL~Rtn~~~~~le~aL~~~gIPy~i~gg~~f~~r~eikd~ 391 (722)
T PRK11773 314 --DGEPISLYCAFNELDEARFVVERIKQWQDNGGALSDCAILYRSNAQSRVLEEALLQAGIPYRIYGGMRFFERQEIKDA 391 (722)
T ss_pred --CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCHHCCHHHHHH
T ss_conf --898605880699789999999999999873898101257751216467899999865998487467101135999999
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999884663024575304687546502466888878877398468999764104679977854334343335666531
Q gi|254780952|r 417 LAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNC 496 (685)
Q Consensus 417 la~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 496 (685)
+++|+++.||.|+.+|.++++.|.+|||+.++..+...+...+.++|++.........+..+....+..|.+.+..+...
T Consensus 392 la~Lrl~~np~d~~al~ril~~P~rgig~~~l~~l~~~a~~~~~sl~~~~~~~~~~~~l~~~~~~~l~~f~~li~~l~~~ 471 (722)
T PRK11773 392 LAYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQACRALLQEKVLAGRAASALQRFIELIDALAQE 471 (722)
T ss_pred HHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987634854349999998284458897689999999997399899999998754656888999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHCCCC
Q ss_conf 02466022233347770966788506884558988843999999983026---------889999975765422111545
Q gi|254780952|r 497 SKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLRELLSIIEKHE---------TLEGFVLQAPLRENLGSFIPD 567 (685)
Q Consensus 497 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~---------sl~~fl~~~~~~~~~~~~~~~ 567 (685)
....++.++++.+++.+|+...+.... .+.+..+++|+.+|++.+..|. ++.+|+.++++........++
T Consensus 472 ~~~~~l~~~~~~i~~~~gl~~~~~~~~-~~~~~~r~~nl~el~~~~~~f~~~~~~~~~~~L~~fL~~~~l~~~~~~~~~~ 550 (722)
T PRK11773 472 TADMPLHEQTDRVIKDSGLRAMYEQEK-GEKGQARIENLEELVTATRQFEYPDEDEDLTPLQAFLSHAALEAGEGQADAH 550 (722)
T ss_pred HCCCCHHHHHHHHHHHCCHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 514999999999999657899997314-6537999999999999999986402334426799999999863376434567
Q ss_pred CCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCH-HHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 89369996113455669836984685766842212996-78789999999998586411699831321125765433355
Q gi|254780952|r 568 SNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINE-GNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQ 646 (685)
Q Consensus 568 ~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~-~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~ 646 (685)
.|+|+|||||+|||||||+|||+||++|.||+.++.++ +.+|||||||||||||||++|||||+.+|+.++.. .
T Consensus 551 ~d~V~LmTiH~AKGLEFp~Vfl~gl~eg~fP~~~s~~~~~~leEERRLfYVaiTRAk~~L~ls~~~~r~~~g~~-----~ 625 (722)
T PRK11773 551 EDAVQLMTLHSAKGLEFPLVFLVGMEEGLFPSQMSLEEGGRLEEERRLAYVGITRAMQKLTLTYAESRRLYGKE-----V 625 (722)
T ss_pred CCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCHHHHCCCC-----C
T ss_conf 88289996120268667768980661798886334689751089999999989887452488551254546777-----6
Q ss_pred CCCCCCHHHHCC
Q ss_conf 568887233147
Q gi|254780952|r 647 PSQVSQFLLELY 658 (685)
Q Consensus 647 ~~~~SrFl~El~ 658 (685)
...|||||.||+
T Consensus 626 ~~~pSRFl~eip 637 (722)
T PRK11773 626 YHRPSRFIREIP 637 (722)
T ss_pred CCCCCCCHHHCC
T ss_conf 788981466578
No 5
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=100.00 E-value=0 Score=1069.90 Aligned_cols=615 Identities=35% Similarity=0.535 Sum_probs=529.9
Q ss_pred CCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC---CCE
Q ss_conf 29988999985389896699958898835899999999998089997886762114799999999999851645---878
Q gi|254780952|r 29 GLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEK---IPR 105 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~---~~~ 105 (685)
.||++|++||. +.+||++|+||||||||+||++||+|||.+.+++|++||||||||+||.||++||.+.+|.. .+.
T Consensus 2 ~Ln~~Q~~AV~-~~~gp~lVlAGaGSGKT~tLt~Ria~Li~~~~v~P~~ILalTFT~kAA~Emk~Rl~~~lg~~~~~~~~ 80 (672)
T PRK10919 2 RLNPGQQQAVE-FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLM 80 (672)
T ss_pred CCCHHHHHHHC-CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 99989999983-99999899973855879999999999986689893338544217999999999999771832137867
Q ss_pred EEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCH
Q ss_conf 96178999999998499848798980728999999999999973998547898999999866754158964612114653
Q gi|254780952|r 106 IQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQSSLTE 185 (685)
Q Consensus 106 i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~ 185 (685)
|+||||||++||++++..+|++++|+|+|+.++..+++++...+.. .....+..+...|+.||+.+++|.+.......+
T Consensus 81 i~TFHS~~~~iLr~~~~~lg~~~~f~i~d~~d~~~~~k~~~~~~~~-~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~ 159 (672)
T PRK10919 81 ISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQLALLKELTEGLIE-DDKVLLQQLISTISNWKNDLKTPAQAAAGAKGE 159 (672)
T ss_pred EECHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCH
T ss_conf 8848999999999989982899998361699999999999987320-234789999999999987179999998761050
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 899999999975577775300111000124543012-0688974012210253210775113468878775111126788
Q gi|254780952|r 186 DAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQG 264 (685)
Q Consensus 186 ~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~ 264 (685)
....+..+|..|++.|++.+++||+||+..++.+|+ +|+++..|+++|+||+||||||||++|++||++|++. .
T Consensus 160 ~~~~~~~~y~~Y~~~l~~~~~~DFdDll~~~~~ll~~~~~v~~~~~~r~~~IlVDEfQDtn~~Q~~ll~~L~~~-----~ 234 (672)
T PRK10919 160 RDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGS-----R 234 (672)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCEEEEEECHHCCCHHHHHHHHHHHCC-----C
T ss_conf 77999999999999999869988799999999998528999999997540897622404999999999997279-----9
Q ss_pred CEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCE
Q ss_conf 75999953068863113322013455420576640678761267514678752024443432010122221023556744
Q gi|254780952|r 265 ARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKV 344 (685)
Q Consensus 265 ~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v 344 (685)
++||||||||||||+||||+|++|.+|.++||+++++.|++||||+++||++||.+|.+|+.+++|.+.+..+. +.++
T Consensus 235 ~~l~vVGD~dQSIY~FRGA~~~~i~~f~~~f~~~~~i~L~~NyRS~~~Il~~an~li~~n~~~~~k~l~~~~~~--g~~~ 312 (672)
T PRK10919 235 ARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSELGY--GDEL 312 (672)
T ss_pred CCEEEECCCCCEEEHHHCCCHHHHHHHHHHCCCCEEEEEHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCC--CCCE
T ss_conf 84777379662300750677689999887566774998423249977899999998761832111001332278--9861
Q ss_pred EEEECCCCCHHCCCCCHHHHH-HHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHHHHHHH
Q ss_conf 887315531000000001366-6531136530311101001478899875202332032033-10001121028999998
Q gi|254780952|r 345 SIHVSQSDNSELSTIIQEIIN-IQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAYFRL 422 (685)
Q Consensus 345 ~~~~~~~~~~Ea~~Ia~~I~~-l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~lla~Lr~ 422 (685)
.++.+.++.+|+.+|+.+|.. ....|.+|+|||||+|+|.++..++++|.++||||.+.|+ +||++++|++++++|++
T Consensus 313 ~~~~~~~~~~Ea~~i~~~ii~~~~~~~~~~~diAIL~R~n~~~~~le~~L~~~~IPy~i~g~~~f~~r~eikdlla~Lr~ 392 (672)
T PRK10919 313 KVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRV 392 (672)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCHHCCHHHHHHHHHHHH
T ss_conf 79835987999999999999998734888355799954503226899999977998799578323127999999999998
Q ss_pred HHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 84663024575304687546502466888878877398468999764104679977854334343335666531024660
Q gi|254780952|r 423 VCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDP 502 (685)
Q Consensus 423 i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 502 (685)
+.||.|+.+|.++++.|.+|+++.++..+..++...+.+++.+.........+..+..+.+..+...+..+....... +
T Consensus 393 l~np~d~~~~~ril~~p~~~i~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~~-~ 471 (672)
T PRK10919 393 LTNPDDDSAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQTLTGRGYESLTRFTHWLAEIQRLAERE-P 471 (672)
T ss_pred HCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_conf 749872489999970730147999999999999863766899998754300026778999999999999999986248-3
Q ss_pred HHHHHHHHHHCCCHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHH--HCCCCCCC
Q ss_conf 2223334777096678850-688455898884399999998302---------68899999757654221--11545893
Q gi|254780952|r 503 APIANMILEQSGYMAMWKN-NKSSEKSQERLDNLRELLSIIEKH---------ETLEGFVLQAPLRENLG--SFIPDSNC 570 (685)
Q Consensus 503 ~~l~~~i~~~~~~~~~~~~-~~~~~~~~~~l~~l~~l~~~~~~~---------~sl~~fl~~~~~~~~~~--~~~~~~d~ 570 (685)
...+..++...++..++.. ......+..++.++.+|+..+.++ .++..++....+.+... ...++.++
T Consensus 472 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~r~~n~~~l~~~~~e~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 551 (672)
T PRK10919 472 VAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQ 551 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 78999999986388899873678402899999999999999999734554652209999999887766643765678990
Q ss_pred EEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 69996113455669836984685766842212996787899999999985864116998313211257654333555688
Q gi|254780952|r 571 IQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQV 650 (685)
Q Consensus 571 V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~ 650 (685)
|+|||||+|||||||+|||+||++|.||+..+.+++++|||||||||||||||++|||||+.+|+.+|. ...+.|
T Consensus 552 V~LmTiH~SKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~eEERRLfYVa~TRAk~~L~ls~~~~r~~~g~-----~~~~~p 626 (672)
T PRK10919 552 VQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCKERRQYGE-----LVRPEP 626 (672)
T ss_pred EEEEEHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCHHHHCCC-----CCCCCC
T ss_conf 899648862310368799967838999876569986087999999999999877665500452343887-----758999
Q ss_pred CCHHHHCC
Q ss_conf 87233147
Q gi|254780952|r 651 SQFLLELY 658 (685)
Q Consensus 651 SrFl~El~ 658 (685)
||||.|||
T Consensus 627 SrFl~eip 634 (672)
T PRK10919 627 SRFLLELP 634 (672)
T ss_pred CCCHHHCC
T ss_conf 94621378
No 6
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=926.00 Aligned_cols=620 Identities=39% Similarity=0.596 Sum_probs=556.3
Q ss_pred HCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC-C--CC
Q ss_conf 62998899998538989669995889883589999999999808999788676211479999999999985164-5--87
Q gi|254780952|r 28 KGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE-K--IP 104 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~-~--~~ 104 (685)
+.||++|++||.+ .+||++|+||||||||+||++||+||+.+++++|++||++|||||||.||++|+...++. . .+
T Consensus 1 ~~Ln~~Q~~av~~-~~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~~~~~~~ 79 (655)
T COG0210 1 SKLNPEQREAVLH-PDGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGLPAAEGL 79 (655)
T ss_pred CCCCHHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEEEEHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 9999899998618-899869995799861899999999998738957577177896769999999999987385544653
Q ss_pred EEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH--C
Q ss_conf 896178999999998499848798980728999999999999973-9985478989999998667541589646121--1
Q gi|254780952|r 105 RIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDL-QIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQ--S 181 (685)
Q Consensus 105 ~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~--~ 181 (685)
+|+||||||.++|++++...|+..+|+++|..++..+++++.... .++...+.+..+...|+.+|+.++.|.+... .
T Consensus 80 ~v~TfHs~~~~~lr~~~~~~~~~~~f~i~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~ 159 (655)
T COG0210 80 TVGTFHSFALRILRRHGERLGLNANFTILDSDDQLALIKELLRRELNLDDKELLPREALRYISEAKNALLSPLEASALLL 159 (655)
T ss_pred EEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99983467799999978854866687110520078999999865416641100389999988999872678242015554
Q ss_pred CC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 46--53899999999975577775300111000124543012-0688974012210253210775113468878775111
Q gi|254780952|r 182 SL--TEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQK 258 (685)
Q Consensus 182 ~~--~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~ 258 (685)
.. .........+|..|++.+...+++||+|++..+++++. +|.+++.++.||+||+||||||||++|+.|+++|+..
T Consensus 160 ~~~~~~~~~~~~~~y~~Y~~~~~~~~~~df~dll~~~~~ll~~~~~v~~~~~~rf~~iLvDE~QDtn~~Q~~ll~~la~~ 239 (655)
T COG0210 160 AAIKSEAEKKLAELYEEYQELLRLNNALDFDDLLLLALRLLEENPEVLEALQARFRYILVDEFQDTNPLQYELLKLLAGN 239 (655)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 01342689999999999999987658536899999999872348478999995689898787778518799999998448
Q ss_pred CCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCC
Q ss_conf 12678875999953068863113322013455420576640678761267514678752024443432010122221023
Q gi|254780952|r 259 EDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDC 338 (685)
Q Consensus 259 ~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~ 338 (685)
+.++|+|||+|||||+||||+|.+|.+|.++||+++++.|++||||++.|+.+||.+|.+|..+.+|.+++.. .
T Consensus 240 -----~~~l~~VGD~dQsIY~frGA~~~ni~~f~~df~~~~~i~Le~nyRSt~~Il~~An~~i~~n~~r~~k~l~~~~-~ 313 (655)
T COG0210 240 -----AANLFVVGDDDQSIYGFRGADPENILDFEKDFPAAKVIKLEQNYRSTPNILAAANKVIANNKKRQAKTLRTEV-E 313 (655)
T ss_pred -----CCCEEEECCCCCCEEEECCCCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-C
T ss_conf -----7757998589873676778783678978763565546760424488899999999998718652334211023-5
Q ss_pred CCCCCEEEEECCCCCHHCCCCCHHHHHHHHHC-CCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEE-CC-CCCCCCCCHH
Q ss_conf 55674488731553100000000136665311-365303111010014788998752023320320-33-1000112102
Q gi|254780952|r 339 HDDAKVSIHVSQSDNSELSTIIQEIINIQNTG-MSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVI-GG-SFYDRQEIRD 415 (685)
Q Consensus 339 ~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g-~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~-g~-~~f~~~eV~~ 415 (685)
+.+..+.++.+.++.+|+.+|+.+|.++...| .+++|+|||+|+|.++..++..|.+.||||.+. || +||++.||++
T Consensus 314 ~~~~~~~~~~~~~~~~ea~~i~~~I~~l~~~~~~~~~d~aiL~R~n~~s~~~e~~l~~~~ipy~i~~gg~~f~~r~eikd 393 (655)
T COG0210 314 GSGEKVVLLLANDEEDEARWIASEIDALIEIGKVNYSDIAILYRTNAQSRLIEEALRAAGIPYRIVIGGTSFFERKEIKD 393 (655)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
T ss_conf 67788569867881778999999999999826888030788861566778899998662897477537076651699999
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999988466302457530468754650246688887887739846899976410467997785433434333566653
Q gi|254780952|r 416 ALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNN 495 (685)
Q Consensus 416 lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 495 (685)
++++|+++.+|.|..++.++++.|.+|+++.++..+...+.....+.++++........+.......+..|...+..+..
T Consensus 394 ~l~~l~~~~n~~d~~~~~r~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~f~~~~~~~~~ 473 (655)
T COG0210 394 LLAYLRLVLNPDDDAAFLRILNLPKRGIGDATLKKLLELARERNLSLLEALKALLSFIRLSERGLALLLDFAELIEELRE 473 (655)
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99997323476757889998513344320668999999986512137898898774143547789899999999999987
Q ss_pred HCCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCCCC--CC
Q ss_conf 1024660222333477709667885068845589888439999999830268----89999975765422111545--89
Q gi|254780952|r 496 CSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLRELLSIIEKHET----LEGFVLQAPLRENLGSFIPD--SN 569 (685)
Q Consensus 496 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~s----l~~fl~~~~~~~~~~~~~~~--~d 569 (685)
.........++..+.+.++|...+...........++.++.+|.+.++.+.+ +..|+.++.+.......... .+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~el~~~~~~~~~~~~~l~~fl~~~~~~~~~~~~~~~~~~~ 553 (655)
T COG0210 474 AILLSTALELIRELLEALGYLEALLEAGSLVAAEDRLENLEELLDVLKRYAEPRESLRAFLSELSLLANDEEEEEPDEDG 553 (655)
T ss_pred HHCCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCCCCCCC
T ss_conf 30223399999999875056899986335014577887899999999874124507999999988611033310224578
Q ss_pred CEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHH--HHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 36999611345566983698468576684221299678--7899999999985864116998313211257654333555
Q gi|254780952|r 570 CIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGN--VEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQP 647 (685)
Q Consensus 570 ~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~--~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~ 647 (685)
+|++||+|+|||||||+|||+|+++|.||+.++.++++ ++|||||||||||||++.|++|++..+... .+...
T Consensus 554 ~V~lmT~H~aKGlEf~~Vfl~g~~eg~~P~~~~~~~~~~~~eEERRL~YVaiTRA~~~L~~t~~~~~~~~-----~~~~~ 628 (655)
T COG0210 554 QVNLMTIHAAKGLEFPYVFLVGLEEGLFPADRSLDEGDEPLEEERRLLYVAITRAKKKLYLTYAASRKLW-----GKEVE 628 (655)
T ss_pred CEEEEEHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCC
T ss_conf 4699720131377687567855536889870000067877655888999987888765533236555532-----65234
Q ss_pred CCCCCHHHHCCC
Q ss_conf 688872331478
Q gi|254780952|r 648 SQVSQFLLELYD 659 (685)
Q Consensus 648 ~~~SrFl~El~~ 659 (685)
..||||+.|++.
T Consensus 629 ~~~srFi~e~~~ 640 (655)
T COG0210 629 EEPSRFVSELPA 640 (655)
T ss_pred CCCCHHHHHHHH
T ss_conf 473578775048
No 7
>TIGR02785 addA_Gpos recombination helicase AddA; InterPro: IPR014152 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the Firmicutes and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00 E-value=0 Score=816.42 Aligned_cols=595 Identities=26% Similarity=0.424 Sum_probs=451.8
Q ss_pred CHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC--CCCHHHEEEEEECHHHHHHHHHHHHHHCCC-------
Q ss_conf 98899998538989669995889883589999999999808--999788676211479999999999985164-------
Q gi|254780952|r 31 NAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHK--EIPPSKILAMTFTNQAIQEMKNRLACYLGE------- 101 (685)
Q Consensus 31 n~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~--~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~------- 101 (685)
|++|++||. ..|..+||.|.||||||+||++||..-|..+ -|+-++.|++||||+||.|||+||...|..
T Consensus 3 T~~Q~~AI~-~~G~nILVsAsAGSGKTaVLVERii~~i~~gE~pvdiDrLLVVTFTnaAA~EMK~Ri~~~l~k~l~~~~~ 81 (1295)
T TIGR02785 3 TDEQWQAIY-DRGQNILVSASAGSGKTAVLVERIIKKILRGENPVDIDRLLVVTFTNAAAREMKERIEEALQKELAQEPD 81 (1295)
T ss_pred CHHHHHHHH-HCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 788899996-3688647653226661478999999996478877020210367888999999999999999997436888
Q ss_pred ----------------------CCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHH----------
Q ss_conf ----------------------587896178999999998499848798980728-99999999999997----------
Q gi|254780952|r 102 ----------------------KIPRIQTFHSFCASILRKHGEVVGLPTDFAILD-SAESRTIIKQLLKD---------- 148 (685)
Q Consensus 102 ----------------------~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~-~~~~~~~~~~~~~~---------- 148 (685)
..+.|||+||||+++||+|++.+.+.|.|+|++ +.++..|+++.+.+
T Consensus 82 d~P~~~ta~~~~~hl~~QL~lL~~A~ISTlhsFCL~Vir~~YYllDlDP~FRil~nd~e~~LL~~E~~~d~~E~~y~~~d 161 (1295)
T TIGR02785 82 DDPERRTAVDNSKHLRRQLALLNKANISTLHSFCLKVIRKHYYLLDLDPSFRILTNDTEELLLLKEVVDDVLEEEYYKED 161 (1295)
T ss_pred CCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87123204437899999996446765104578999997666043553788765775678889887579999999852015
Q ss_pred ----------CCC-CCCCCC-----------------HHHHHHH-----------------------------HHHHHHC
Q ss_conf ----------399-854789-----------------8999999-----------------------------8667541
Q gi|254780952|r 149 ----------LQI-DDKDYD-----------------PHEVIEK-----------------------------IDYWQNR 171 (685)
Q Consensus 149 ----------~~~-~~~~~~-----------------~~~~~~~-----------------------------i~~~k~~ 171 (685)
+.. |..+-. |+.+++. +..+++.
T Consensus 162 ~~~F~~L~~~f~~rDR~D~~L~~li~~lY~F~~a~P~Pe~WL~~l~~~Y~V~~~~~~e~~~~~~~ik~~~~~~~~~~~~~ 241 (1295)
T TIGR02785 162 NEAFFELVDNFSGRDRSDDGLRDLILKLYDFARATPNPEKWLNKLAEAYEVKEDFLIESKLLQQQIKDLLKNELEGLQEK 241 (1295)
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15899999865078977012899999999997449986788862655422340467888999999899999999999999
Q ss_pred ------------C-CC----------------------------------------------------------------
Q ss_conf ------------5-89----------------------------------------------------------------
Q gi|254780952|r 172 ------------G-WN---------------------------------------------------------------- 174 (685)
Q Consensus 172 ------------~-~~---------------------------------------------------------------- 174 (685)
+ +.
T Consensus 242 l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~e~~~~~~~~~~~l~~ 321 (1295)
T TIGR02785 242 LQKALELFMAEDGELAPKLENFQLEAQNIKELIEEKLAQEDWNELREAVALVKFENLKRKAAKKAEEKEDLLEEAKKLRE 321 (1295)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999865432026631689999999999999998885436999999986402443143101257441479999998874
Q ss_pred -----------------HHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC--------
Q ss_conf -----------------64612114653899-------9999999755777753001110001245430120--------
Q gi|254780952|r 175 -----------------PKDIPQSSLTEDAE-------IPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHH-------- 222 (685)
Q Consensus 175 -----------------~~~~~~~~~~~~~~-------~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~-------- 222 (685)
|+++.+.-..+-.+ +...+-..|...|++.|++||.||-++|+++|.+
T Consensus 322 ~~K~~~~~l~~~~F~~~~~~~~~~~~G~~~p~v~~l~~~~~~f~~~f~~~KR~kn~~DF~DlEH~~L~IL~~~~~~GE~~ 401 (1295)
T TIGR02785 322 EAKKQLAKLKEDYFARDEEELLRDMQGELKPIVKELAQLVKDFIEAFGAEKREKNVLDFSDLEHYALQILSNENESGERK 401 (1295)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHH
T ss_conf 44589999998731438789999860202799999999999999999997653788640276899999723588887422
Q ss_pred H-HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCC-----
Q ss_conf 6-8897401221025321077511346887877511112678875999953068863113322013455420576-----
Q gi|254780952|r 223 P-HVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFK----- 296 (685)
Q Consensus 223 ~-~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~----- 296 (685)
| .++..||.+|.=||||||||||.+|..||.+|..+.. ..+|+|||||.|||||+||-|||.+|..--++|.
T Consensus 402 ~s~~~~~YrekF~EvlVDEYQDtN~~QE~IL~~~~~g~~--~~gNlFMVGDVKQSIY~FRqAdP~LFl~KY~~f~~eg~~ 479 (1295)
T TIGR02785 402 PSEAAEFYREKFKEVLVDEYQDTNLVQESILQLLKRGEE--EEGNLFMVGDVKQSIYRFRQADPSLFLEKYKRFAQEGNE 479 (1295)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCC--CCCCEEEECCEEECCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 799999986448546751434612799999998348624--777744434442043631025713578750121466667
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCC-----------HHHHHHCCCC--------------CCCC---E
Q ss_conf 640678761267514678752024443432----010-----------1222210235--------------5674---4
Q gi|254780952|r 297 DANIIKLEQNYRSTTHILNTANKLISHNKQ----RFD-----------KKLFTQRDCH--------------DDAK---V 344 (685)
Q Consensus 297 ~~~~i~L~~NyRS~~~Ii~~an~li~~n~~----r~~-----------k~l~~~~~~~--------------~~~~---v 344 (685)
..+.|.|.+||||+++|+++.|-|+++.-+ .++ +....+.+.. +... .
T Consensus 480 ~G~rI~L~~NFRSr~eVl~~TN~~F~~lMd~~vGeIdYD~~a~L~~G~~~Y~~~~~~~~~~~~~~~~~~~~~e~~~~d~~ 559 (1295)
T TIGR02785 480 HGKRIDLAENFRSRKEVLDATNYLFKQLMDEEVGEIDYDEEAQLKFGAAKYPENPDKKTELLLYEKLAIEEEEEEEIDEE 559 (1295)
T ss_pred CCCEECHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 88440032147874215556538999972888886556724572268767788775024568888775431133457765
Q ss_pred EEEECCCCCHHCCCCCHHHHHHHHHC-------------CCCCHHHHEECCCH-HHHHHHHHHHCCCCCEEEEC-C-CCC
Q ss_conf 88731553100000000136665311-------------36530311101001-47889987520233203203-3-100
Q gi|254780952|r 345 SIHVSQSDNSELSTIIQEIINIQNTG-------------MSLNNIAILVRTSW-QTRKFEDAFLEQEIPHKVIG-G-SFY 408 (685)
Q Consensus 345 ~~~~~~~~~~Ea~~Ia~~I~~l~~~g-------------~~~~diAVL~Rtn~-~~~~l~~~L~~~gIP~~~~g-~-~~f 408 (685)
.....+....|+..|+.+|+.+++.+ +.|+|||||.||.. ++..|.++|.+.|||+.+-| . +.|
T Consensus 560 e~~i~d~~~~E~~~~~~~Ik~li~~~~~vYD~~~g~~R~~~Y~DIviL~rs~~k~n~~I~~~f~~~~IPV~~nG~~~nYF 639 (1295)
T TIGR02785 560 ELEILDKAQQEATVVAERIKALIKEGFKVYDKKTGEYRPVKYRDIVILTRSRGKWNLQIMEEFKKYGIPVFVNGDAENYF 639 (1295)
T ss_pred CCHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCHH
T ss_conf 53010451556788999999997468620032138626602556788678986433799999984899879727765607
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC--------CCHHHH
Q ss_conf 011210289999988466302457530468754650246688887887739846899976410467--------997785
Q gi|254780952|r 409 DRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQ--------FRPQIR 480 (685)
Q Consensus 409 ~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~~~~--------~~~~~~ 480 (685)
+..||+-+|++||+|.||..+..|..||++|.+|+.+..|..|.-... ...+++++......... ......
T Consensus 640 q~~Ev~~ml~~L~vIDNP~QDIPLvaVLRSPIvgf~E~ELa~iRl~~~-k~~~~Y~a~~~y~~~~~~~~~qkt~~~~~L~ 718 (1295)
T TIGR02785 640 QTTEVRVMLSLLRVIDNPYQDIPLVAVLRSPIVGFDEEELALIRLQNA-KDSSFYEAVKSYVKAEKLASSQKTLIEDELY 718 (1295)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 889999999873121685402788998734467888888999843166-6640799999996027888433552044899
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHH
Q ss_conf 4334343335666531024660222333477709667885068845589888439999999830268-----89999975
Q gi|254780952|r 481 QSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLRELLSIIEKHET-----LEGFVLQA 555 (685)
Q Consensus 481 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~s-----l~~fl~~~ 555 (685)
.++..|...|.+|+..+...+..+++|.|.++++|+++.-.. +.+.+|-+||..|...|..|++ |-.|+..+
T Consensus 719 ~K~~~F~~~L~~wR~~a~~~~~~~LIW~iY~~t~y~dYVGGL---P~GkqRQANL~aLy~RA~~YE~tsFkGLFqF~RFI 795 (1295)
T TIGR02785 719 EKLKRFLDSLQKWREFARTHSISELIWKIYEDTGYLDYVGGL---PNGKQRQANLYALYERARQYEKTSFKGLFQFIRFI 795 (1295)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEECCC---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999999999999874278578999998532510001268---88466788899999999998512574067889999
Q ss_pred HHH----HHHH---HCCCCCCCEEEEEECCCCCCCCCEEEECCCCC---------------------------------C
Q ss_conf 765----4221---11545893699961134556698369846857---------------------------------6
Q gi|254780952|r 556 PLR----ENLG---SFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQ---------------------------------G 595 (685)
Q Consensus 556 ~~~----~~~~---~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~---------------------------------g 595 (685)
.-. .+++ ...+..|+|+|||||+|||||||+|||.||.. +
T Consensus 796 ~r~~e~~~Dla~a~~~~e~~naVR~MTIH~SKGLEFPvVFv~gl~k~FN~~DL~~~~ll~~~~G~G~~y~dkmetGaveD 875 (1295)
T TIGR02785 796 ERMQERQKDLAEAVAVGEAENAVRLMTIHKSKGLEFPVVFVLGLGKQFNKQDLNESYLLNRQLGLGIKYIDKMETGAVED 875 (1295)
T ss_pred HHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 99830230115642468876726510020766543667897158823301112014111345675178887641265135
Q ss_pred CCCCHHCC--------------CHHHHHHHHHHHHHHHHHHHHEEEEEECC
Q ss_conf 68422129--------------96787899999999985864116998313
Q gi|254780952|r 596 LLPHQLSI--------------NEGNVEGERRLAYVGITRAKKKCHLFYTI 632 (685)
Q Consensus 596 ~~P~~~~~--------------~~~~~eEErRL~YVA~TRAk~~L~l~~~~ 632 (685)
.+|-...+ ...-++||.|+|||||||||++|||..+.
T Consensus 876 hYP~~~r~~ypsL~~~a~k~~~~~~llsEEMRvLYVALTRAk~KLiLVG~~ 926 (1295)
T TIGR02785 876 HYPPEERLSYPSLPKVAIKQKMKRELLSEEMRVLYVALTRAKEKLILVGSV 926 (1295)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 788643213576899999999999878888899999988888654355203
No 8
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=100.00 E-value=0 Score=790.55 Aligned_cols=478 Identities=40% Similarity=0.641 Sum_probs=432.4
Q ss_pred CCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC---CCEE
Q ss_conf 9988999985389896699958898835899999999998089997886762114799999999999851645---8789
Q gi|254780952|r 30 LNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEK---IPRI 106 (685)
Q Consensus 30 Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~---~~~i 106 (685)
||++|++||.+ .+||++|+||||||||+||++||++||.+++++|++|||+||||+||.||++||.+.++.. .+.|
T Consensus 1 Ln~~Q~~av~~-~~~~llV~AgAGSGKT~~L~~Ri~~li~~~~~~p~~IL~lTFT~kAA~Em~~Ri~~~l~~~~~~~~~i 79 (494)
T pfam00580 1 LNPEQRKAVTH-LGGPLLVLAGAGTGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAAREMKERILKLLGKAEASELNI 79 (494)
T ss_pred CCHHHHHHHCC-CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 99889999809-99997999718706899999999999981899974787670289999999999998738344688678
Q ss_pred EEHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCC-HHHHHHHHHHHHHCCCCHHHHHHCC
Q ss_conf 6178999999998499848-798980728999999999999973998--54789-8999999866754158964612114
Q gi|254780952|r 107 QTFHSFCASILRKHGEVVG-LPTDFAILDSAESRTIIKQLLKDLQID--DKDYD-PHEVIEKIDYWQNRGWNPKDIPQSS 182 (685)
Q Consensus 107 ~T~Hsf~~~il~~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~i~~~k~~~~~~~~~~~~~ 182 (685)
+||||||+++|++|+..+| ++++|.++|+.++..++++++.....+ ...+. ...+...++.+|+.++.|+++....
T Consensus 80 ~T~Hsf~~~iLr~~~~~~g~~~~~f~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~ 159 (494)
T pfam00580 80 STFHSFCLRILRKYANRIGDLLPNFSILDELDQLALLKEILKKDRLDLDSKLLRPLLELKELISKAKNELLSPEELQQAS 159 (494)
T ss_pred EHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 54999999999998998377777882166788999999999874136684433689999999999987599999997524
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf --653899999999975577775300111000124543012-06889740122102532107751134688787751111
Q gi|254780952|r 183 --LTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKE 259 (685)
Q Consensus 183 --~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~ 259 (685)
..........+|..|++.|++.|++||+||+..++++|+ +|+++..++.+|+|||||||||||++||.|++.|+++
T Consensus 160 ~~~~~~~~~~~~~~~~y~~~~~~~~~~Df~Dll~~~~~lL~~~~~~~~~~~~r~~~ilVDEfQDtn~~Q~~il~~L~~~- 238 (494)
T pfam00580 160 YAATPRDKLAAEFYQEYQERLKENNALDFDDLLLLTLELLRSDPELLEAYRERFKYILVDEFQDTNPIQYELLKLLAGG- 238 (494)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCEEECHHHCCCHHHHHHHHHHHHCC-
T ss_conf 1357589999999999999999869989899999999997319999999986072654034302649999999998658-
Q ss_pred CCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHH-HHHHCCC
Q ss_conf 267887599995306886311332201345542057664067876126751467875202444343201012-2221023
Q gi|254780952|r 260 DSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKK-LFTQRDC 338 (685)
Q Consensus 260 ~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~-l~~~~~~ 338 (685)
+.++|+||||||||||||||+|++|.+|.++||+++++.|++||||+++|++++|.+|.+|..+.+|. +.+.++
T Consensus 239 ----~~~l~~VGD~~QSIY~FRGAd~~~~~~f~~~~~~~~~i~L~~NyRS~~~Il~~aN~l~~~~~~~~~~~~l~~~~~- 313 (494)
T pfam00580 239 ----HPNLFLVGDPDQSIYGFRGADIENILKFEKDFPAAKVITLEQNYRSTPEILNAANKLISNNTARKEKRLLWSQKG- 313 (494)
T ss_pred ----CCEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf ----983999817971442017999699999998666566725889989887899999999972602244543545578-
Q ss_pred CCCCCEEEEECCCCCHHCCCCCHHHHHHHHHC--CCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHH
Q ss_conf 55674488731553100000000136665311--36530311101001478899875202332032033-1000112102
Q gi|254780952|r 339 HDDAKVSIHVSQSDNSELSTIIQEIINIQNTG--MSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRD 415 (685)
Q Consensus 339 ~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g--~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~ 415 (685)
++.++.++.+.+..+|+.+|+++|.+++..| .+|+|||||+|+|+++..++++|.++||||.+.|+ +||+++||++
T Consensus 314 -~~~~v~~~~~~~~~~Ea~~ia~~I~~l~~~~~~~~~~DiAIL~R~~~~~~~l~~~L~~~gIP~~~~~~~~f~~~~ev~d 392 (494)
T pfam00580 314 -SGEKVTVYEAETEQEEAEFIADEIKALHKSGAAIPFGDIAVLVRSNSQSRAIEEALLKAGIPYKILGGLSFFDRKEIKD 392 (494)
T ss_pred -CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf -8996079837999999999999999998779998856568998252318999999997799989989842001899999
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89999988466302457530468754650246688887887739846899976410--4679977854334343335666
Q gi|254780952|r 416 ALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLID--SGQFRPQIRQSLQNFVKDIRRW 493 (685)
Q Consensus 416 lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~l~~~ 493 (685)
++++||++.||.|+.+|.++++.|.+|+|+.++..|...+...+.++|+++..... ...+.++..+++..|...+..|
T Consensus 393 lla~Lr~i~np~d~~al~rvl~~P~~g~~~~~l~~l~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l~~f~~~~~~~ 472 (494)
T pfam00580 393 LLALLRLIDNPKDDLALLRILNTPKRGIGPTTLDKLRNLAKDRQISLFKALNQLLEKLNELLSARAYKKLLLFLALIEEL 472 (494)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999987698868999999814878989999999999998759999999999986301326989999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHCCC
Q ss_conf 5310246602223334777096
Q gi|254780952|r 494 NNCSKKMDPAPIANMILEQSGY 515 (685)
Q Consensus 494 ~~~~~~~~~~~l~~~i~~~~~~ 515 (685)
+......++.++++.+++.+||
T Consensus 473 r~~~~~~~~~~l~~~i~~~tgy 494 (494)
T pfam00580 473 EKLLLEILLEALLDEVLELLGY 494 (494)
T ss_pred HHHHCCCCHHHHHHHHHHHHCC
T ss_conf 9976439999999999986194
No 9
>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00 E-value=0 Score=738.32 Aligned_cols=582 Identities=24% Similarity=0.316 Sum_probs=414.8
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC----------
Q ss_conf 8899998538989669995889883589999999999808999788676211479999999999985164----------
Q gi|254780952|r 32 AQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE---------- 101 (685)
Q Consensus 32 ~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~---------- 101 (685)
+.|.+| +++...+-|.|.||||||+||+.||++||.+ |++|++|||||||++||.||.+||-++|++
T Consensus 1 ~~Q~~A--aDP~~S~WVSANAGSGKTHVLt~RViRLLL~-G~~P~~ILCLTYTKAAAAeMq~RvF~rL~~Wa~L~nD~~L 77 (1190)
T TIGR02784 1 DRQAQA--ADPAASAWVSANAGSGKTHVLTQRVIRLLLA-GTEPSKILCLTYTKAAAAEMQNRVFKRLGEWAVLDNDADL 77 (1190)
T ss_pred CCCCCC--CCCCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 941200--3777470124316788522489999998617-8783100020555899999999987551044438886889
Q ss_pred ----------------------------------CCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ----------------------------------5878961789999999984998487989807289999999999999
Q gi|254780952|r 102 ----------------------------------KIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLK 147 (685)
Q Consensus 102 ----------------------------------~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~ 147 (685)
.+-+|.||||||-.||++|+-+.|+++.|+++|+..+..++.++..
T Consensus 78 ~~~l~~LeGe~~~~~da~~L~~AR~LFArALETPGGLKIQTIHAFCe~LL~~FPLEAnv~~~F~~~DDr~~A~l~~~arr 157 (1190)
T TIGR02784 78 RARLEALEGEAGKRPDAAKLAEARRLFARALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVIDDRAAAALLEEARR 157 (1190)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHH
T ss_conf 99999842546888888899999899999741787761577799999885207751378988533026899999999999
Q ss_pred HCCCCCC-------------------CCCHHHHHH-----------HHHHHH-----------HCCCCH----HHHHH--
Q ss_conf 7399854-------------------789899999-----------986675-----------415896----46121--
Q gi|254780952|r 148 DLQIDDK-------------------DYDPHEVIE-----------KIDYWQ-----------NRGWNP----KDIPQ-- 180 (685)
Q Consensus 148 ~~~~~~~-------------------~~~~~~~~~-----------~i~~~k-----------~~~~~~----~~~~~-- 180 (685)
++-.... +...+.++. +++... ..++.| +++..
T Consensus 158 ~ll~~~~~~~d~~~~~a~a~~l~~~~e~gl~~ll~ei~~~R~~~~~fl~~~~~~~~~~~~l~~~lgl~~~~~~e~l~~~~ 237 (1190)
T TIGR02784 158 ELLAGAAAPPDPALAEALATVLEAAGETGLEALLAEIVAKRDALSAFLDEAGGAEGAEADLRRALGLAPGDTAEDLLEAV 237 (1190)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99723037884058999999998716558789999999616888789998640235899999982979998977899996
Q ss_pred ---------------------------------------------------------------------CCCC-------
Q ss_conf ---------------------------------------------------------------------1465-------
Q gi|254780952|r 181 ---------------------------------------------------------------------SSLT------- 184 (685)
Q Consensus 181 ---------------------------------------------------------------------~~~~------- 184 (685)
....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~d~~a~~~~l~~~~l~~~G~~k~~~~~~~k~~~~~~p~l~ 317 (1190)
T TIGR02784 238 WPLPGLPRLALALIAALLKSGGGSKDAAAALSQLREAAAESDPVARLDLLLRAFLTSKGEPKSASAVLKKAIQKSLPDLA 317 (1190)
T ss_pred HCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 03789818999999986135665047999987887506878704589999998740688766303465456565458999
Q ss_pred --------------HHH-------------HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCC----CE
Q ss_conf --------------389-------------99999999755777753001110001245430120688974012----21
Q gi|254780952|r 185 --------------EDA-------------EIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHE----KI 233 (685)
Q Consensus 185 --------------~~~-------------~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~----r~ 233 (685)
+.. .+...+...|+..|+++|.|||+|||.++..||..|.+.+.++- =+
T Consensus 318 ~~~~~~~~~~~~~~~r~~~~~~~~~t~AAL~lA~~l~~~y~~~K~~rG~LDF~DLI~rt~~LL~r~~~g~WV~YKLD~Gi 397 (1190)
T TIGR02784 318 EALEDAASRVEALRERLRALRMAERTLAALRLAARLLQRYAALKKARGLLDFDDLIERTVALLARPSAGAWVHYKLDRGI 397 (1190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEHCCCCCC
T ss_conf 99999999999999899999999988999999999999999998747898767799999997088986743001017750
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHCCC------CCC----CCCEEEEEECHHHHHHHCCCCCCHHHHHHHC----CCCC--
Q ss_conf 02532107751134688787751111------267----8875999953068863113322013455420----5766--
Q gi|254780952|r 234 PYIMVDEYQDINTPQYLLLRLLCQKE------DSK----QGARICCVGDENQCIYEWRGAQFSHILNFQK----DFKD-- 297 (685)
Q Consensus 234 ~~ilVDEfQDtn~~Q~~ll~~L~~~~------~~~----~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~----~f~~-- 297 (685)
+||||||+|||||-||+||+.|+.+. ... ....||+|||.|||||||+||+|+.|.+=.. .+.+
T Consensus 398 DHILvDEAQDTSP~QW~iI~~LA~eFF~GegAR~~sGr~~~RTiFAVGDeKQSIYSFQGA~P~~F~~~~~~~~~k~~~~~ 477 (1190)
T TIGR02784 398 DHILVDEAQDTSPEQWEIIQALAEEFFSGEGARSGSGREVERTIFAVGDEKQSIYSFQGADPERFAEERRLFSRKVRAVG 477 (1190)
T ss_pred CEEEECCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 43771220048865899999998763068640246762245326887673104454567755689999889999998610
Q ss_pred --CEEEEEEECCCCCHHHHHHHHHHHHH--HHHHCCH------H-HHHHCCCCCCCCEEEEECCC--CCH----------
Q ss_conf --40678761267514678752024443--4320101------2-22210235567448873155--310----------
Q gi|254780952|r 298 --ANIIKLEQNYRSTTHILNTANKLISH--NKQRFDK------K-LFTQRDCHDDAKVSIHVSQS--DNS---------- 354 (685)
Q Consensus 298 --~~~i~L~~NyRS~~~Ii~~an~li~~--n~~r~~k------~-l~~~~~~~~~~~v~~~~~~~--~~~---------- 354 (685)
-+.+.|+-+||||+.|+.++..+|+. |...+.+ . -.+.+ .+.+|.|.+|..-. .+.
T Consensus 478 ~~f~~~~L~~SFRST~dvL~~VD~vF~dP~~~~G~~~~~~q~~~~H~a~R-~~~PG~V~LWd~i~DY~~~~e~~edW~~P 556 (1190)
T TIGR02784 478 RKFEDVSLTYSFRSTPDVLAAVDLVFADPENARGLSGDSEQAAVVHEAIR-DDLPGEVDLWDLISDYKEEGEEPEDWTDP 556 (1190)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCCHHHCCC
T ss_conf 02677302023058489999998874482121488877555212379974-28988588547723578788881002044
Q ss_pred ------------HCCCCCHHHHHHHHHC-----------------CCCCHHHHEECCCH-HHHHHHHHHHCC-CCCEEEE
Q ss_conf ------------0000000136665311-----------------36530311101001-478899875202-3320320
Q gi|254780952|r 355 ------------ELSTIIQEIINIQNTG-----------------MSLNNIAILVRTSW-QTRKFEDAFLEQ-EIPHKVI 403 (685)
Q Consensus 355 ------------Ea~~Ia~~I~~l~~~g-----------------~~~~diAVL~Rtn~-~~~~l~~~L~~~-gIP~~~~ 403 (685)
-|+.||.+|..+++.| +.|+||-||||.++ -...|..+|+++ |||+ .
T Consensus 557 ~D~~~~~~p~~~LAerIAa~I~~w~~~g~~i~vdGe~k~~g~~R~~~pGDiLvLVRkR~~l~~al~rALK~r~~iPV--A 634 (1190)
T TIGR02784 557 VDELGERAPEVRLAERIAAEIRAWLDRGEIIPVDGEDKGLGRRRAVRPGDILVLVRKRDALFSALIRALKRRKGIPV--A 634 (1190)
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCE--E
T ss_conf 57012306304899999999999718986542158776646686335575367630557799999999983589834--3
Q ss_pred CC---CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHCCCCCCHH
Q ss_conf 33---100011210289999988466302457530468754650246688887887739--8468999764104679977
Q gi|254780952|r 404 GG---SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHH--ISLLQASEKLIDSGQFRPQ 478 (685)
Q Consensus 404 g~---~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 478 (685)
|. .+-++-.|+||||+++++..|.|+.++..+|.+|.+|.++..+..|. ..+. .++|..+.......
T Consensus 635 GADRL~Lt~hiAV~DL~AL~rFvL~P~DDLSLA~lLKSPLfgl~ed~LF~LA---~~R~~~esLw~~L~~~~~e~----- 706 (1190)
T TIGR02784 635 GADRLKLTSHIAVKDLMALGRFVLQPEDDLSLAALLKSPLFGLDEDDLFALA---AGRSGGESLWAALRRRAAES----- 706 (1190)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHH---CCCCCCCCHHHHHHHHHCCC-----
T ss_conf 0440346741258999999998548984378999981568999878999995---16897520899999851578-----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-----HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC-----CH
Q ss_conf 8543343433356665310246602223334777096-----6788506884558988843999999983026-----88
Q gi|254780952|r 479 IRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGY-----MAMWKNNKSSEKSQERLDNLRELLSIIEKHE-----TL 548 (685)
Q Consensus 479 ~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~-----~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~-----sl 548 (685)
...+......|+.|...++..++++++..++..-|- ..-+-.--. .+--|.|.+|++.+=.++ ++
T Consensus 707 -~~~~~~~~~~L~~~~~~ad~~~pf~Fya~~L~~d~g~GrshR~klL~RLG----~EA~D~lDEfL~~AL~~Er~g~PgL 781 (1190)
T TIGR02784 707 -TAEFAETLAVLDAWLSLADFLTPFEFYARLLGRDDGDGRSHRRKLLARLG----AEAEDILDEFLSQALAYERTGLPGL 781 (1190)
T ss_pred -CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf -85489999999999713471550999999866889982589999998414----3466899999999999872368606
Q ss_pred HHHHHHHHHHHHHHHC--CCCCCCEEEEEECCCCCCCCCEEEECCCCCCC----------------------CCCHHC--
Q ss_conf 9999975765422111--54589369996113455669836984685766----------------------842212--
Q gi|254780952|r 549 EGFVLQAPLRENLGSF--IPDSNCIQIMTLHAAKGLEFDTVFISGWEQGL----------------------LPHQLS-- 602 (685)
Q Consensus 549 ~~fl~~~~~~~~~~~~--~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~----------------------~P~~~~-- 602 (685)
++||..+...+-.-+. ....+-|+|||+|+|||||-|+||||+-.... .|-+++
T Consensus 782 qaFL~~L~~~d~EiKRe~d~~r~eVRvMTVHgaKGLEAPVVfLvD~gs~~~~~~~~~~l~~~~~~g~~~~~~~~~W~~~~ 861 (1190)
T TIGR02784 782 QAFLSWLEAADPEIKREMDQARDEVRVMTVHGAKGLEAPVVFLVDTGSKPFASQRVPKLLATGGSGDANDVKVPLWRPAS 861 (1190)
T ss_pred HHHHHHHHHCCCEEECCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCC
T ss_conf 89999872079486125589988788877654665665767703877232468886301212788877664034206743
Q ss_pred -------------CCHHHHHHHHHHHHHHHHHHHHEEEEEECC
Q ss_conf -------------996787899999999985864116998313
Q gi|254780952|r 603 -------------INEGNVEGERRLAYVGITRAKKKCHLFYTI 632 (685)
Q Consensus 603 -------------~~~~~~eEErRL~YVA~TRAk~~L~l~~~~ 632 (685)
..+...+|-|||||||||||+++|++|-..
T Consensus 862 ~~~~~~~~~a~~~~k~~~~~EyrRLLYVamTRAedrLIVcG~~ 904 (1190)
T TIGR02784 862 AFDPKLSAAARERLKERAEDEYRRLLYVAMTRAEDRLIVCGYR 904 (1190)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1477268999999986887546787899989998675443467
No 10
>PRK13909 putative recombination protein RecB; Provisional
Probab=100.00 E-value=0 Score=725.76 Aligned_cols=516 Identities=24% Similarity=0.341 Sum_probs=347.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC------------------------
Q ss_conf 69995889883589999999999808999788676211479999999999985164------------------------
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE------------------------ 101 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~------------------------ 101 (685)
++|.||||||||+||+.|+.+||.+ |.+|++|||+|||||||.|||+||.+.|..
T Consensus 1 l~i~AsAGSGKT~~L~~R~l~Ll~~-g~~p~~ILavTFT~kAA~EMk~RI~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (911)
T PRK13909 1 LALKASAGSGKTFALSVRFLALLFK-GANPNEILALTFTKKAANEMKERIIDTLLNLEKENKESELNELEEELGLSKEEL 79 (911)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHCC-CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 9799767044999999999999738-979244878556889999999999999986630543058999998708998999
Q ss_pred -------------CCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----------------
Q ss_conf -------------587896178999999998499848798980728999999999999973998----------------
Q gi|254780952|r 102 -------------KIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQID---------------- 152 (685)
Q Consensus 102 -------------~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------- 152 (685)
...+|+||||||.+|||+|+..+|++++|.+.++... .+...++..+..+
T Consensus 80 ~~~~~~~~~~~l~~~~~I~TIhsFc~~ilr~~~~~~gl~~~f~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (911)
T PRK13909 80 LNKRDKVYERFLNSELKISTIDAFFQKILRKFCLNLGLSPDFEVTSSHQE-ELNEKFLSELSKDELKELSVFAAQCISLE 158 (911)
T ss_pred HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEECCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999975147986976999999999978998296999755711899-99999999971413778999999987512
Q ss_pred ----------------------CC----CCCHHHHHHHHHHHHHC-------------CCCHHHH---------------
Q ss_conf ----------------------54----78989999998667541-------------5896461---------------
Q gi|254780952|r 153 ----------------------DK----DYDPHEVIEKIDYWQNR-------------GWNPKDI--------------- 178 (685)
Q Consensus 153 ----------------------~~----~~~~~~~~~~i~~~k~~-------------~~~~~~~--------------- 178 (685)
.. ......+.......++. .+..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (911)
T PRK13909 159 DSKSKFFNELLRFYKNNLYLFDPNKKEPAFDEEEILEKLSELKEYILSIETASDRAKKAFKAEDFREFLNSTWLEKESEY 238 (911)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 34023699999998633420486423541119999999999999987423247787740163559999765431121035
Q ss_pred ---HHCCC---CH-----------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCH----HH
Q ss_conf ---21146---53-----------------------89999999997557777530011100012454301206----88
Q gi|254780952|r 179 ---PQSSL---TE-----------------------DAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHP----HV 225 (685)
Q Consensus 179 ---~~~~~---~~-----------------------~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~----~v 225 (685)
.+... .. -..+...+...|...++++|.+||+||+..++++|+++ .+
T Consensus 239 ~~~~k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ldf~Dl~~~~~~lL~~~~~~~~l 318 (911)
T PRK13909 239 RYFKKLENPTLDAELEELKNALKKYYIAKENYKLKKLFKFLQLYKEAKNELIKKKNALDFDDISKKVYELLYESIDKDFL 318 (911)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 56664223024799999999999999999999999999999999999999999948968899999999997459626899
Q ss_pred HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf 97401221025321077511346887877511112----67887599995306886311332201345542057664067
Q gi|254780952|r 226 LKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKED----SKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANII 301 (685)
Q Consensus 226 ~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~----~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i 301 (685)
..+++.+|+|||||||||||++||+||+.|+.... ....+++|+|||+||||||||||+|++|..+.++|+ ....
T Consensus 319 ~~rl~~~~~~ilVDEFQDTn~~Q~~il~~L~~~~~~g~~~~~~~~lf~VGD~KQSIY~FRgAd~~lf~~~~~~~~-~~~~ 397 (911)
T PRK13909 319 YFRLDSKISHILIDEFQDTSLLQYKILLPLIDEIKSGEGQSKNRSFFYVGDVKQSIYRFRGGKKELFDSVAKDFS-QIID 397 (911)
T ss_pred HHHHHCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHHH-HHHC
T ss_conf 999860576899640024899999999999987623555678872799737731102207889599999998601-6430
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEEC
Q ss_conf 87612675146787520244434320101222210235567448873155310000000013666531136530311101
Q gi|254780952|r 302 KLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVR 381 (685)
Q Consensus 302 ~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~R 381 (685)
.|++||||+++||+++|.++.+.....++.... ....++.+.+.... ..+.+..++.+|..+++.|.+|+|||||||
T Consensus 398 ~L~~NyRS~~~Iv~~~N~~F~~~~~~~~~~~~~--~~~~~g~v~v~~~~-~~~~~~~i~~~i~~l~~~g~~~~DiaILvR 474 (911)
T PRK13909 398 NLDTNYRSSPLIVNFVNEVFKEKYKNYPKQFQN--EHKSGGYVRVVESE-DDELLEQLVQQAQFLLEHGVDPDDIAILCW 474 (911)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCEEEEECCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 235267996899999999998753234632355--45789817886688-689999999999999977988267899994
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHHHHHHHHHCCCHH--HHHHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 001478899875202332032033-100011210289999988466302--45753046875465024668888788773
Q gi|254780952|r 382 TSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAYFRLVCQEHRD--EDFKRIINCPKRGIGKESLHKIQYHASQH 458 (685)
Q Consensus 382 tn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~lla~Lr~i~~p~d~--~a~~~il~~p~~gi~~~~l~~l~~~a~~~ 458 (685)
+|.++..+.++|.++||||...++ +||++++|++++++|+++....+- ..+..++....
T Consensus 475 ~~~~~~~i~~~L~~~gIp~~~~~~~~l~~~~ev~~ll~~L~~~~~~~~~~~~~~~~l~~~~~------------------ 536 (911)
T PRK13909 475 TNDDALSVKEYLQEQGIKAVTESSALLINQAEVKAILEALKYCLFGEEIYKHNVLKLLGLHD------------------ 536 (911)
T ss_pred CCCCHHHHHHHHHHCCCCEEECCCCCHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC------------------
T ss_conf 56429999999997799879735200322699999999999985788325999999738773------------------
Q ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 98468999764104679977854334343335666531024660222333477709667885068845589888439999
Q gi|254780952|r 459 HISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLREL 538 (685)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 538 (685)
. ...+ ..+.. ..+.+.......++ + ..-.++..|
T Consensus 537 --~------------------~~~l-------~~~~~------~~~~~~~~~~~~~~----------~---~~~~~l~~l 570 (911)
T PRK13909 537 --D------------------KIEL-------NTFKS------AKESVFILIKELKL----------D---LNDENLLKF 570 (911)
T ss_pred --C------------------HHHH-------HHHHH------HHHHHHHHHHHHCC----------C---HHHHHHHHH
T ss_conf --2------------------4667-------76534------35579999998584----------5---268999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCC----------------C--C-
Q ss_conf 99983026889999975765422111545893699961134556698369846857668----------------4--2-
Q gi|254780952|r 539 LSIIEKHETLEGFVLQAPLRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLL----------------P--H- 599 (685)
Q Consensus 539 ~~~~~~~~sl~~fl~~~~~~~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~----------------P--~- 599 (685)
+..+.+++++.+|+..+.... ......+.++|+|||||+|||||||+|||+++..+.- + .
T Consensus 571 ~~~~~~~~~~~~fl~~~~~~~-~~~~~~~~~~V~iMTIHkSKGLEFpvVil~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (911)
T PRK13909 571 LELAVGYEDIEEFLEKLESCS-KKIASENSKGVQIMTVHKSKGLEFPHVIVCDRLGKPNSDKENILEEYDGIELWQIYYR 649 (911)
T ss_pred HHHHHCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999856047999999998268-7566777677077763202576688799637766777887763104666542200025
Q ss_pred ---HHCC-----------CHHHHHHHHHHHHHHHHHHHHEEEEEECC
Q ss_conf ---2129-----------96787899999999985864116998313
Q gi|254780952|r 600 ---QLSI-----------NEGNVEGERRLAYVGITRAKKKCHLFYTI 632 (685)
Q Consensus 600 ---~~~~-----------~~~~~eEErRL~YVA~TRAk~~L~l~~~~ 632 (685)
.... ...+.+||+||||||||||+++|+|+...
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLLYVAlTRA~~~L~i~~~~ 696 (911)
T PRK13909 650 IKGRENFDKDYARALEKEKAAELEEEINKLYVAFTRAKESLIVVKKD 696 (911)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHEEEEECC
T ss_conf 41100057899999999999866898645164340413334888456
No 11
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=100.00 E-value=0 Score=710.98 Aligned_cols=559 Identities=20% Similarity=0.319 Sum_probs=365.2
Q ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH--------CCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC--------
Q ss_conf 85389896699958898835899999999998--------08999788676211479999999999985164--------
Q gi|254780952|r 38 VTIPDDTPLLILAGAGTGKTTVLIARMLHLIC--------HKEIPPSKILAMTFTNQAIQEMKNRLACYLGE-------- 101 (685)
Q Consensus 38 v~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~--------~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~-------- 101 (685)
.+.+..|..||.|+||||||+||+.++.+||. +..+++++||||||||+||.|||+||++.+..
T Consensus 11 ~~~pL~G~~LVeASAGTGKT~~La~l~lRLll~~~~~~~~~~pl~id~ILvVTFT~aAA~EMk~RIr~~L~~~~~a~~~~ 90 (1181)
T PRK10876 11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSNIHELRIACLRE 90 (1181)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88898999798871536678999999999986244554567999828198965678999999999999999999987505
Q ss_pred -------------------------------CCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH--
Q ss_conf -------------------------------58789617899999999849984879898072899999999999997--
Q gi|254780952|r 102 -------------------------------KIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKD-- 148 (685)
Q Consensus 102 -------------------------------~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~-- 148 (685)
+.+.|+||||||.+||++|+...|+..++.++++... +..+++.+
T Consensus 91 ~~~dp~~~~ll~~~~d~~~~~~~L~~a~~~ld~A~I~TIHsFC~riLr~~a~e~g~~~~~~l~~de~~--l~~~~~~d~w 168 (1181)
T PRK10876 91 TTDNPLYARLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFW 168 (1181)
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCHHHCCCCCCCCCCCCHHH--HHHHHHHHHH
T ss_conf 66888999999858678999999999983558888870999999999869996199953356478799--9999999999
Q ss_pred --------------------------------CCCC-----CCCCCH-------HHHHHHHHHHH---------------
Q ss_conf --------------------------------3998-----547898-------99999986675---------------
Q gi|254780952|r 149 --------------------------------LQID-----DKDYDP-------HEVIEKIDYWQ--------------- 169 (685)
Q Consensus 149 --------------------------------~~~~-----~~~~~~-------~~~~~~i~~~k--------------- 169 (685)
+..+ ...... ..+...++.++
T Consensus 169 r~~~~~l~~~~~~~~~~~~~~p~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 248 (1181)
T PRK10876 169 RRHCYPLPREIAQVVFEEWKGPEALLRDINRYLQGEAPVIKAPPPDDETLASRHEQIVARIDAVKQQWRDAVGELDALIE 248 (1181)
T ss_pred HHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98603388999999998533999999999998615625334898533689999999999999999999999999999998
Q ss_pred HCCC-----------------------------CHHHHHHC------------CCCHHH---------------------
Q ss_conf 4158-----------------------------96461211------------465389---------------------
Q gi|254780952|r 170 NRGW-----------------------------NPKDIPQS------------SLTEDA--------------------- 187 (685)
Q Consensus 170 ~~~~-----------------------------~~~~~~~~------------~~~~~~--------------------- 187 (685)
..++ .|+.+.+. ......
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~~~k~~~~~~~~~l~~~~~~l~~~~~~l~~~~l 328 (1181)
T PRK10876 249 SSGIDRRKYNRKNQPKWIEKISAWAEEETNSYQLPEALEKFSQRFLEERTKAGGETPRHPLFEAIDQLLAEPLSLRDLVI 328 (1181)
T ss_pred HCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48765222040216999999999874513452154899999999999976547886136999999999971876999999
Q ss_pred -HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC---HHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf -99999999755777753001110001245430120---68897401221025321077511346887877511112678
Q gi|254780952|r 188 -EIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHH---PHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQ 263 (685)
Q Consensus 188 -~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~---~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~ 263 (685)
.....+...|.+.|++++.+||+||+..+..+|+. +.++..++.||+++|||||||||++||+|++.|+.+. .
T Consensus 329 ~~~l~~~~~~~~~~K~~~~~ldF~DLl~~l~~~L~~~~~~~la~~l~~ry~~iLIDEFQDTd~~Q~~I~~~l~~~~---~ 405 (1181)
T PRK10876 329 TRALAEIRETVAQEKRRRGELGFDDMLSRLDSALRSESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWGHQ---P 405 (1181)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEHHHCCCCHHHHHHHHHHHCCC---C
T ss_conf 9999999999999999818988799999999986468769999999851856440232048899999999996479---9
Q ss_pred CCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH-----CCH-HHHHHC-
Q ss_conf 8759999530688631133220134554205766406787612675146787520244434320-----101-222210-
Q gi|254780952|r 264 GARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQR-----FDK-KLFTQR- 336 (685)
Q Consensus 264 ~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r-----~~k-~l~~~~- 336 (685)
.+++|+|||||||||+|||||+..+....+... ..+.|.+||||+++||++.|.++.+..+. ++. ++.+..
T Consensus 406 ~~~LfmVGDpKQSIY~FRgADi~~yl~a~~~~~--~~~~L~~NfRS~~~vv~~vN~lF~~~~~~f~~~~i~~~~v~~~~~ 483 (1181)
T PRK10876 406 ETALLLIGDPKQAIYAFRGADIFTYMKARSEVS--AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGK 483 (1181)
T ss_pred CCCEEEEECCHHHHHHCCCCCHHHHHHHHHCCC--CEEECCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCC
T ss_conf 881699826436655225678999998632435--535887688994799999999997165302104677643554444
Q ss_pred --------CCCCCCCEEEEECCCC--------CHHCCCCCHHHHHHHHHC---------------CCCCHHHHEECCCHH
Q ss_conf --------2355674488731553--------100000000136665311---------------365303111010014
Q gi|254780952|r 337 --------DCHDDAKVSIHVSQSD--------NSELSTIIQEIINIQNTG---------------MSLNNIAILVRTSWQ 385 (685)
Q Consensus 337 --------~~~~~~~v~~~~~~~~--------~~Ea~~Ia~~I~~l~~~g---------------~~~~diAVL~Rtn~~ 385 (685)
.....+.+.++..+.+ ..++..++.+|.+++..| +.|+|||||||++++
T Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~A~~I~~lL~~~~~~~~~~~~~~~~Rpl~~~DIaILvRs~~~ 563 (1181)
T PRK10876 484 NQALRFVVKGETQPAMKFWLMEGESCGVGDYQQTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 (1181)
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEECCCHH
T ss_conf 54544145788875300112687654601489999999999999998532334045414676576772116888446146
Q ss_pred HHHHHHHHHCCCCCEE-EEC-CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 7889987520233203-203-31000112102899999884663024575304687546502466888878877398468
Q gi|254780952|r 386 TRKFEDAFLEQEIPHK-VIG-GSFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLL 463 (685)
Q Consensus 386 ~~~l~~~L~~~gIP~~-~~g-~~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~ 463 (685)
+..+.++|.++|||.. ..+ .++|+++||++++++|+++.+|.++..+..+|..|.+|++...+..+... ...|
T Consensus 564 a~~i~~aL~~~gIPsv~~s~~~~~f~s~Ea~~ll~lL~al~~P~~d~~L~a~L~Spl~g~~~~eL~~l~~~-----e~~~ 638 (1181)
T PRK10876 564 AALIRDALTLLAIPSVYLSNRDSVFETLEAQEMLWLLQAVLAPERENTLRSALATSMMGLNALDIETLNND-----ERAW 638 (1181)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCC-----HHHH
T ss_conf 99999999976997387247741111399999999999985979729999998366459799999988516-----3789
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHH---HHHH
Q ss_conf 9997641046799778543343433356665310246602223334777096678850688455898884399---9999
Q gi|254780952|r 464 QASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLR---ELLS 540 (685)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~---~l~~ 540 (685)
+.+ .+.+..++..........+++.++...++...+..... +..++.|+. ++++
T Consensus 639 ~~~--------------------~~~f~~~~~~w~~~g~l~~l~~l~~~~~~~~~ll~~~~---gerrl~nl~~l~ellq 695 (1181)
T PRK10876 639 DAV--------------------VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG---GERRLTDILHISELLQ 695 (1181)
T ss_pred HHH--------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
T ss_conf 999--------------------99999999999975599999999997109999985867---3689999999999999
Q ss_pred HHH-HCCCHHHHHHHHHH---HHH------HHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCC-----CCCCHH----
Q ss_conf 983-02688999997576---542------21115458936999611345566983698468576-----684221----
Q gi|254780952|r 541 IIE-KHETLEGFVLQAPL---REN------LGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQG-----LLPHQL---- 601 (685)
Q Consensus 541 ~~~-~~~sl~~fl~~~~~---~~~------~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g-----~~P~~~---- 601 (685)
... ...+..+|+..+.. ..+ ......+.++|+|||||||||||||+||+|++... .+.|..
T Consensus 696 ~~~~~~~~~~~l~~wl~~~~~~~~~~~~~~~~rlesd~~aVrIMTIHkSKGLEFPVVflPf~~~~~~~~~~~~h~~~~~~ 775 (1181)
T PRK10876 696 EAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFE 775 (1181)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEECCCCCE
T ss_conf 99861135879999999997444656402203765666827999975036776898985476556777774453355560
Q ss_pred ---CC----------CHHHHHHHHHHHHHHHHHHHHEEEEEEC
Q ss_conf ---29----------9678789999999998586411699831
Q gi|254780952|r 602 ---SI----------NEGNVEGERRLAYVGITRAKKKCHLFYT 631 (685)
Q Consensus 602 ---~~----------~~~~~eEErRL~YVA~TRAk~~L~l~~~ 631 (685)
.. .++.+.||.||+|||||||+++|+|-.+
T Consensus 776 ~~~d~~~~~~~~~~~~~E~laE~~RLLYVAlTRA~~~~~l~~~ 818 (1181)
T PRK10876 776 AVLDLNAAEESVALAEAERLAEDLRLLYVALTRSVWHCSLGVA 818 (1181)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
T ss_conf 3313776878999999998656776789987676564500210
No 12
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=711.36 Aligned_cols=589 Identities=25% Similarity=0.354 Sum_probs=404.4
Q ss_pred CCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCHHHEEEEEECHHHHHHHHHHHHHHCCC------
Q ss_conf 2998899998538989669995889883589999999999808-999788676211479999999999985164------
Q gi|254780952|r 29 GLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHK-EIPPSKILAMTFTNQAIQEMKNRLACYLGE------ 101 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~-~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~------ 101 (685)
..+++|..++ .+.++.++|.|+||||||+||+.|+.+||..+ +++|++|||+||||+||.||++||...+.+
T Consensus 3 ~~~~~~~~~~-~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~~~~~~~ 81 (1139)
T COG1074 3 DSTEALQPLA-SPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKEALQEND 81 (1139)
T ss_pred CCHHHHCHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4254425553-586666899966889842169999999997258998557234406388899999999999999987000
Q ss_pred ----------------------------------CCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ----------------------------------5878961789999999984998487989807289999999999999
Q gi|254780952|r 102 ----------------------------------KIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLK 147 (685)
Q Consensus 102 ----------------------------------~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~ 147 (685)
..+.|.|||+||.++++.++...|.+..|.+.++. ..+..++++
T Consensus 82 ~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~I~Tih~Fc~~~L~~~~~~~~~~~~fe~~~d~--~~l~~e~~~ 159 (1139)
T COG1074 82 EKLASDDELLEALAALIQALIQAIRLFALALETNDEAAIFTIHGFCQRILRQFALEAGISFDFELLEDE--SDLFLELVE 159 (1139)
T ss_pred HHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCHHCCH--HHHHHHHHH
T ss_conf 100010267887541431189999999999847785346413889999999847751776542000266--899999999
Q ss_pred HC----CC----------------C---------------CCCCC--------H--------------------------
Q ss_conf 73----99----------------8---------------54789--------8--------------------------
Q gi|254780952|r 148 DL----QI----------------D---------------DKDYD--------P-------------------------- 158 (685)
Q Consensus 148 ~~----~~----------------~---------------~~~~~--------~-------------------------- 158 (685)
++ .. . ..... +
T Consensus 160 d~~r~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1139)
T COG1074 160 DFWRRRFYPLPAELAQLVAQLYKFPQATPLPALLLEIELARFGFPAYDLELLLPLHLIQKALIILQLKQAWLASLLELEA 239 (1139)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986304686899999999861043321256788867540445434011132213468999997665878888887777
Q ss_pred -------------HHH---HHHHHHH------------------H--------HCC----CCHHH--HHHCCC-----CH
Q ss_conf -------------999---9998667------------------5--------415----89646--121146-----53
Q gi|254780952|r 159 -------------HEV---IEKIDYW------------------Q--------NRG----WNPKD--IPQSSL-----TE 185 (685)
Q Consensus 159 -------------~~~---~~~i~~~------------------k--------~~~----~~~~~--~~~~~~-----~~ 185 (685)
... ++.++.| . +.. ..+.. +..... .+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1139)
T COG1074 240 LILGGLDKRASSLENLLKWIEKLSAWDNFERLDKALPTKLEKIFFQKKLKKKTKEAKLLARPPLHAEFEEIENRILLADE 319 (1139)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 65154045677788888788888740220334443116899877886300001211322368356899977535778767
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCH--HHHHHCCCCEEHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------89999999997557777530011100012454301206--889740122102532107751134688787
Q gi|254780952|r 186 ----------DAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHP--HVLKKYHEKIPYIMVDEYQDINTPQYLLLR 253 (685)
Q Consensus 186 ----------~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~--~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~ 253 (685)
-..+...+...|.+.|++++.+||+|++.++..+|.++ .++..++.+|+|||||||||||+.||+|++
T Consensus 320 ~~~~~~~~~~l~~l~~~~~~~~~~~K~~r~~ldFdDl~~~~~~lL~~~~~~l~~~lr~~~~~iLIDEfQDT~~~Q~~Il~ 399 (1139)
T COG1074 320 LLRLAPRLRALLKLLEELIERYDAEKRQRNALDFDDLIHRLAKLLTSEGEELAESLREQYPHILIDEFQDTDPQQWRILS 399 (1139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
T ss_conf 66657899999999999999999999885778989999999999845839999999847985887403459988999999
Q ss_pred HHHCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCH---
Q ss_conf 75111126788759999530688631133220134554205766406787612675146787520244434320101---
Q gi|254780952|r 254 LLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDK--- 330 (685)
Q Consensus 254 ~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k--- 330 (685)
.|..+...+ ++++|+|||||||||+||||||..|..-.+.+...+.+.|++||||+++||++.|.++++.......
T Consensus 400 ~l~~~~~~~-~~~lF~VGD~KQSIY~FRgAD~~~f~~a~~~~~~~~~~~L~~N~RS~~~vl~avN~lF~~~~~~~~~~~~ 478 (1139)
T COG1074 400 RLFAGFKAG-NRTLFLVGDPKQSIYRFRGADIFTFLEAASSEKAFARITLETNYRSTPELLNAVNALFKQAMFAYPGEID 478 (1139)
T ss_pred HHHHCCCCC-CCCEEEECCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 997256677-8507997473476553137897899998514333434204666678099999999999625540577778
Q ss_pred -----HHHHHCCCC-----CCCCE-EEEECC--------------CCCHHCCCCCHHHHHHHH--------HCCCCCHHH
Q ss_conf -----222210235-----56744-887315--------------531000000001366653--------113653031
Q gi|254780952|r 331 -----KLFTQRDCH-----DDAKV-SIHVSQ--------------SDNSELSTIIQEIINIQN--------TGMSLNNIA 377 (685)
Q Consensus 331 -----~l~~~~~~~-----~~~~v-~~~~~~--------------~~~~Ea~~Ia~~I~~l~~--------~g~~~~diA 377 (685)
.+...++.. ...++ ..+..+ ....++..|+..|..+++ ..++++|||
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~a~~Ia~~L~~~~~~~~~~~~~r~i~~~DIa 558 (1139)
T COG1074 479 YDPVAELGARNGSPGSVNGEPLPALKFWEEEDDWTAPENEEDEREIADLEARQIAAWLRELIEGEAVLDGERPIRAGDIA 558 (1139)
T ss_pred CCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEE
T ss_conf 75165530367776666764310355422664455667840076799999999999999987377644677889842558
Q ss_pred HEECCCHHHHHHHHHHHCC-CCCEEEEC-CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1101001478899875202-33203203-310001121028999998846630245753046875465024668888788
Q gi|254780952|r 378 ILVRTSWQTRKFEDAFLEQ-EIPHKVIG-GSFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHA 455 (685)
Q Consensus 378 VL~Rtn~~~~~l~~~L~~~-gIP~~~~g-~~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a 455 (685)
||||++..+..|.++|.++ +|||...+ .++|++.|+++++++|+++.+|.++..+..++.+|.+|++..++..+...
T Consensus 559 ILVR~~~ea~~i~~aL~~~~~ipv~~~~r~~~~~~~e~~dll~lL~~il~P~~d~~L~a~L~Spifgl~~d~L~~l~~~- 637 (1139)
T COG1074 559 VLVRSRNEAAAIERALKKAGIIPVYLSNRSSLFETLEAQDLLALLRAILNPEDDLPLAALLRSPLFGLTEDDLAALAQD- 637 (1139)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCC-
T ss_conf 8954836799999999864699788578656315599999999999970854327899998275669999999998456-
Q ss_pred HHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf 77398468999764104679977854334343335666531024660222333477709667885068845589888439
Q gi|254780952|r 456 SQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNL 535 (685)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l 535 (685)
......++..+....+. ..+...+..|+..+...++.+.++.++...++.+. .........+++
T Consensus 638 ~~~~~~~~~~~~~~~~~-----------~~~~~~L~~~~~l~~~~~~~~~i~~~l~~~~~~e~-----~l~~~~~~~~~L 701 (1139)
T COG1074 638 EAEWEFLWENLRQLADI-----------WRFRGVLAMWRALAKITPLHDLIAERLLSTNLGER-----DLTNGLHAQELL 701 (1139)
T ss_pred CCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHH-----HCCCHHHHHHHH
T ss_conf 51156899999999899-----------99976999999998402388899999850332033-----124758899999
Q ss_pred HHHHHHHHHCC--C---HHHHHHHHHHHH--HHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCC-----C-----
Q ss_conf 99999983026--8---899999757654--22111545893699961134556698369846857668-----4-----
Q gi|254780952|r 536 RELLSIIEKHE--T---LEGFVLQAPLRE--NLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLL-----P----- 598 (685)
Q Consensus 536 ~~l~~~~~~~~--s---l~~fl~~~~~~~--~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~-----P----- 598 (685)
+++...+..++ . +..|+......+ ......++.+.|+|||||||||||||+||+|+.....+ |
T Consensus 702 ~~~~~~~~~~e~~~~~~L~~~i~~~~~~~~~~~~~l~~~~~~VrImTIHkSKGLEfPiVflp~~~~~~~~~~~~~~~~~~ 781 (1139)
T COG1074 702 QELLTRALSYEHGLLRWLERFIALIENNDEEQARRLESDRDLVRIMTIHKSKGLEFPIVFLPFILSKRFNDSDVPLLVYY 781 (1139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEC
T ss_conf 99999877755303789999998654578677763157778589999853577889989975888888776654200104
Q ss_pred ------CHH---------------CCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCC
Q ss_conf ------221---------------2996787899999999985864116998313211257
Q gi|254780952|r 599 ------HQL---------------SINEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHD 638 (685)
Q Consensus 599 ------~~~---------------~~~~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~ 638 (685)
... ..+...++||+||||||||||+++|+|+.+.......
T Consensus 782 d~~~~~~~~~~~~~~~~~~~~~k~~~~~e~~~E~~RLLYVAlTRAk~~L~l~g~~~~~~~~ 842 (1139)
T COG1074 782 DGLRFELFDDLKSYPTPESQANKELAEEEALAEELRLLYVALTRAKEQLILIGAPSKREKS 842 (1139)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCC
T ss_conf 7653023424556664788999999999878899999999885554514898405644454
No 13
>PRK11054 helD DNA helicase IV; Provisional
Probab=100.00 E-value=0 Score=722.40 Aligned_cols=302 Identities=27% Similarity=0.445 Sum_probs=236.0
Q ss_pred HCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 62998899998538989669995889883589999999999808999788676211479999999999985164587896
Q gi|254780952|r 28 KGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQ 107 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~ 107 (685)
+.||++||+||. ..++|+||+||||||||+||++||+|||..+.++|++||+|||||+||.||++||...+|...++++
T Consensus 195 ~PLn~~Qr~Avi-~~ed~~LVLAGAGSGKT~vLt~RiayLI~~g~~~P~~ILaLTFT~kAA~EMreRl~~~lg~~~v~~~ 273 (684)
T PRK11054 195 SPLNPSQARAVV-NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRKAAEEMDERIRERLGTEDITAR 273 (684)
T ss_pred CCCCHHHHHHEE-ECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999989995727-4799648983389970779999999999759998667786863499999999999975499983786
Q ss_pred EHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC------------------C--CCCCC-CC----HHHHH
Q ss_conf 178999999998499848798980728999999999999973------------------9--98547-89----89999
Q gi|254780952|r 108 TFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDL------------------Q--IDDKD-YD----PHEVI 162 (685)
Q Consensus 108 T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~------------------~--~~~~~-~~----~~~~~ 162 (685)
||||||++||+++....+.-..+..-+...+..++....+.. . +.... +. ...+.
T Consensus 274 TFHSlal~ILr~~~~~~p~is~~~~d~~~r~~~~i~~~l~~~~~~~~~~k~~~~~L~~e~~~~i~~~~~~~~~~l~~~l~ 353 (684)
T PRK11054 274 TFHALALHIIQQGSKKVPVISKLENDSKARHALWIAHWLKQCSEKKAQAKGWRKWLTEEMKWPVPEGNFWDDEKLQRRLA 353 (684)
T ss_pred EHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 59999999999844457876620004677787799999988655466666788765555404665300013177999999
Q ss_pred HHHHHHHHCCCCHHHH----HHC-------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCC
Q ss_conf 9986675415896461----211-------46538999999999755777753001110001245430120688974012
Q gi|254780952|r 163 EKIDYWQNRGWNPKDI----PQS-------SLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHE 231 (685)
Q Consensus 163 ~~i~~~k~~~~~~~~~----~~~-------~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~ 231 (685)
..++.|.+.+.+.... ... ......+++..+|.+|++.|++.|.+||+|||..+..++++. .++.
T Consensus 354 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~l~~ply~aYe~~Lk~~~~IDFdDmI~~a~~ll~~~----~~~~ 429 (684)
T PRK11054 354 SRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQAVVILEKG----RFIS 429 (684)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC----CHHH
T ss_conf 999999876431012588876236377889888778999999999999998759988799999999998707----1442
Q ss_pred CEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCH
Q ss_conf 21025321077511346887877511112678875999953068863113322013455420576640678761267514
Q gi|254780952|r 232 KIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTT 311 (685)
Q Consensus 232 r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~ 311 (685)
+|+||+||||||||+.|++||++|.+.. .+.+|||||||+||||+|||||+.+|.+|.++||+++++.|++||||++
T Consensus 430 ~~ryILVDEfQDiS~~Q~~Ll~aL~~~~---~~~~LfaVGDD~QSIYrFrGAdi~~~~~F~~~F~~a~~~~L~~nYRs~~ 506 (684)
T PRK11054 430 PWKHILVDEFQDISPQRAALLEALRKQN---SQTTLFAVGDDWQAIYRFSGADVSLTTAFHERFGEGTICHLDTTYRFNS 506 (684)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC---CCCEEEEEECCCHHEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 3768998763369999999999987339---9975999806742101126888489998987679967997878888865
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHCC
Q ss_conf 67875202444343201012222102
Q gi|254780952|r 312 HILNTANKLISHNKQRFDKKLFTQRD 337 (685)
Q Consensus 312 ~Ii~~an~li~~n~~r~~k~l~~~~~ 337 (685)
.|+++||++|..|+.++.|++.+...
T Consensus 507 ~I~~~An~fI~~Np~Ql~K~l~s~~~ 532 (684)
T PRK11054 507 RIGEVANRFIQQNPHQLKKPLNSLTK 532 (684)
T ss_pred HHHHHHHHHHHHCHHHCCCCCCCCCC
T ss_conf 99999999998495741877565557
No 14
>TIGR00609 recB exodeoxyribonuclease V, beta subunit; InterPro: IPR004586 Exodeoxyribonuclease V, or RecBCD holoenzyme, (3.1.11.5 from EC) is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. The complex catalyses exonucleolytic cleavage in either the 5' to 3' or 3' to 5' direction to yield 5-phosphooligonucleotides in the presence of ATP. This is the beta subunit .; GO: 0005524 ATP binding, 0008854 exodeoxyribonuclease V activity, 0006281 DNA repair.
Probab=100.00 E-value=0 Score=592.02 Aligned_cols=585 Identities=21% Similarity=0.342 Sum_probs=370.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--------CCHHHEEEEEECHHHHHHHHHHHHHHCCC----------
Q ss_conf 389896699958898835899999999998089--------99788676211479999999999985164----------
Q gi|254780952|r 40 IPDDTPLLILAGAGTGKTTVLIARMLHLICHKE--------IPPSKILAMTFTNQAIQEMKNRLACYLGE---------- 101 (685)
Q Consensus 40 ~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~--------~~p~~Il~iTFT~~AA~el~~Ri~~~l~~---------- 101 (685)
.+..|..||-|+||||||+||+.-+.+||...| ..+++|||||||++|++|||.||+..+..
T Consensus 6 ~p~~g~~LiEASAGTGKTFtI~~l~lRlll~~gg~~~F~~~~~v~eiLVvTFT~AAT~ELk~RIr~~i~~a~~~~~~~Gi 85 (1324)
T TIGR00609 6 IPLNGTFLIEASAGTGKTFTIAALYLRLLLEGGGENAFKRPLTVEEILVVTFTNAATEELKTRIRERIHEALRALKAKGI 85 (1324)
T ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 77664068874176148999999999999851512202443461212111222788899889988889999999864573
Q ss_pred -----------------------------------------------------CCCEEEEHHHHHHHHHHHHHHHCCCCC
Q ss_conf -----------------------------------------------------587896178999999998499848798
Q gi|254780952|r 102 -----------------------------------------------------KIPRIQTFHSFCASILRKHGEVVGLPT 128 (685)
Q Consensus 102 -----------------------------------------------------~~~~i~T~Hsf~~~il~~~~~~~g~~~ 128 (685)
+.+.|-||||||.++|+.|+...+...
T Consensus 86 aklGddtlsdGiaay~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~A~~~~D~a~i~TIHgfC~~~L~~~~f~~~~~f 165 (1324)
T TIGR00609 86 AKLGDDTLSDGIAAYCEEHEETSDELPELLLEAIQDEKVKQAISRLRLALATLDEAAIYTIHGFCQRMLEQYAFESDEIF 165 (1324)
T ss_pred HHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 02032034566899874256688732468888734754889999999999875476644663343566775323203300
Q ss_pred CCCCCCHHHHHHHHHHHHHHC-----------------------------------------------------------
Q ss_conf 980728999999999999973-----------------------------------------------------------
Q gi|254780952|r 129 DFAILDSAESRTIIKQLLKDL----------------------------------------------------------- 149 (685)
Q Consensus 129 ~~~i~~~~~~~~~~~~~~~~~----------------------------------------------------------- 149 (685)
+-.+..+.. .++.++++++
T Consensus 166 ~~~l~~~~~--~l~~~~~~df~r~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1324)
T TIGR00609 166 EQELIEDES--LLLAEIVKDFWRRNFYNLPFDIAQIVLKTKKSPQAVLTQILAYLLRQSYAEPIYLAFLSPPLDLEKLIK 243 (1324)
T ss_pred HHHCCCCHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHH
T ss_conf 021035877--999999999998630466468999999986215778878888876665303036653155513799999
Q ss_pred ----------------------------------------CCCCCCCCHHHHH---HHHHHHH-----------------
Q ss_conf ----------------------------------------9985478989999---9986675-----------------
Q gi|254780952|r 150 ----------------------------------------QIDDKDYDPHEVI---EKIDYWQ----------------- 169 (685)
Q Consensus 150 ----------------------------------------~~~~~~~~~~~~~---~~i~~~k----------------- 169 (685)
+++...++...+. ..+..|.
T Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kF~ 323 (1324)
T TIGR00609 244 WHEQIYKKLDKLKKQLIASFRIILKELNALIKDLRKYEKKGLKRRKFSKENLLKWFVKLLEWAESSLLIYKFPKILKKFS 323 (1324)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 99999998720268999999999999999997436300035543458700047999999730345202343355776315
Q ss_pred ---------HCC---CCHHHH-----H---HCC-CC-------H------HHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf ---------415---896461-----2---114-65-------3------899999999975577775300111000124
Q gi|254780952|r 170 ---------NRG---WNPKDI-----P---QSS-LT-------E------DAEIPKAIYIQYVAYLQKTKSCDFGGLIIK 215 (685)
Q Consensus 170 ---------~~~---~~~~~~-----~---~~~-~~-------~------~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~ 215 (685)
+-| .+|.-. . ... .. . ...+++.|-+...+.+++.+.++|||||..
T Consensus 324 ~~~l~~~~~~g~LGk~~~~~~~f~~~~~~~~~~~~~nalee~~~~~~~~~~~~~l~~v~~~L~~~k~~~~~~gfddll~~ 403 (1324)
T TIGR00609 324 QKNLEAKAKKGCLGKTTPKHAVFEEIDKLLAEREEENALEELKFSLKDRVRLRLLKEVQEELKKEKKRRREIGFDDLLSR 403 (1324)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 67887554305678888881323789998851101347887668889999999999999999998523104783368999
Q ss_pred HHHHCCC-H---HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHH-HH
Q ss_conf 5430120-6---88974012210253210775113468878775111126788759999530688631133220134-55
Q gi|254780952|r 216 TIEVLHH-P---HVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHI-LN 290 (685)
Q Consensus 216 a~~ll~~-~---~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~-~~ 290 (685)
...+|+. + .++..++.||+.|||||||||++.||+|++.|...... ....||+||||||+||+|||||.-.. +.
T Consensus 404 L~~aL~~n~~~~~l~~~ir~~y~~aLIDEFQDTD~~Qy~IF~~lf~~~~~-~~~~LfLIGDPKQaIY~FRgADI~tYnL~ 482 (1324)
T TIGR00609 404 LEKALKSNEEGEKLAQAIREQYPIALIDEFQDTDPQQYRIFSKLFIAQKD-FETALFLIGDPKQAIYSFRGADIFTYNLQ 482 (1324)
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCCEEECCCHHHHHHHHCCCHHHHHHH
T ss_conf 99997408678689999983296788724336887899999998307886-44353243173177764305761135589
Q ss_pred HHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH------HCCHH-----H----H-HH---------CCCCCCCCEE
Q ss_conf 420576640678761267514678752024443432------01012-----2----2-21---------0235567448
Q gi|254780952|r 291 FQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQ------RFDKK-----L----F-TQ---------RDCHDDAKVS 345 (685)
Q Consensus 291 f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~------r~~k~-----l----~-~~---------~~~~~~~~v~ 345 (685)
-...++.-+.++|.+||||++.+|...|+|+..+.+ .+... + + +. ..+....++.
T Consensus 483 Ak~~~~~d~ry~L~~N~RS~~~Lv~s~N~lF~~~~~~~~~pF~~~~~GlenPi~f~~v~~~~~n~~~~~~~~~~~~~p~~ 562 (1324)
T TIGR00609 483 AKEKADEDARYTLDTNWRSTPALVESINKLFSQAENNAIAPFLFKNEGLENPIPFIPVLAAQKNSKGSFVINGQEQPPIH 562 (1324)
T ss_pred HHHCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 75126623400453456573889999999841123576554210788877777762356400012456443777777522
Q ss_pred EEECC--CC---C-----HHCCCCCHHHHHHHH----------------HCCCCCHHHHEECCCHHHHHHHHHHHCCCCC
Q ss_conf 87315--53---1-----000000001366653----------------1136530311101001478899875202332
Q gi|254780952|r 346 IHVSQ--SD---N-----SELSTIIQEIINIQN----------------TGMSLNNIAILVRTSWQTRKFEDAFLEQEIP 399 (685)
Q Consensus 346 ~~~~~--~~---~-----~Ea~~Ia~~I~~l~~----------------~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP 399 (685)
++..+ .. . .-+...++.|..++. ..++.+|||||||++..+..+.++|...+||
T Consensus 563 ~~~~~V~~~~~G~~~~~~~~~~~~a~~I~~wL~~~~~~~~~~~~~~~g~~~~~~~dIaVLVr~~~ea~~~~~aL~~~~I~ 642 (1324)
T TIGR00609 563 FFVTEVEKKELGVDDYRQTIAEKCAREIADWLAAAALGLAKFKAKEEGIRPLRAGDIAVLVRGRKEANQVRKALKKAQIP 642 (1324)
T ss_pred EEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 10112320003603889999998699999999999999874000026723555016048427814489999999860141
Q ss_pred EEEECC--CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH-HHHHHCCCCCC
Q ss_conf 032033--100011210289999988466302457530468754650246688887887739846899-97641046799
Q gi|254780952|r 400 HKVIGG--SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQA-SEKLIDSGQFR 476 (685)
Q Consensus 400 ~~~~g~--~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~-~~~~~~~~~~~ 476 (685)
....+. ++|++.+..+++.+|+++..|.....+..+|..-.+|+....++.+.. ...+.+.+. +..++ -+-
T Consensus 643 s~y~s~k~~vf~t~ea~~l~~lL~a~l~P~~~~~l~~~L~s~~f~~~~~~~~~~~~---qDkiCLieefienii---vLL 716 (1324)
T TIGR00609 643 SVYLSDKDSVFATEEAQELLLLLEALLEPEREGTLRAALASRIFGLSALELETLNQ---QDKICLIEEFIENII---VLL 716 (1324)
T ss_pred CHHHCCCCCHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHC---CCCCHHHHHHHHHHH---HHH
T ss_conf 02232644110486589999999985082468889999997874678899999732---364204888874664---453
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC---CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC-----CH
Q ss_conf 77854334343335666531024660222333477709---66788506884558988843999999983026-----88
Q gi|254780952|r 477 PQIRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSG---YMAMWKNNKSSEKSQERLDNLRELLSIIEKHE-----TL 548 (685)
Q Consensus 477 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~---~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~-----sl 548 (685)
.+--..+..++..+..+...............++.... ....+-....++..-..+.++.++++-+.... -+
T Consensus 717 ek~e~~~~~~~~~f~~~~~~w~~~G~l~~~~~~~~~~~~~~~~~~LL~~~~Ger~lt~l~~l~elL~~~~~~~~~~~~l~ 796 (1324)
T TIGR00609 717 EKDEKEWERVVEKFREYRDIWRKRGVLAMFQRLMLEAKNKTIGERLLSQNGGERSLTDLLHLAELLQEAAHQEENKLSLL 796 (1324)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 36757899999999999999998638999999999861023654532025774226659999999999875020123100
Q ss_pred HHHHHHHHHHH------HHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCC------C---CHH----------CC
Q ss_conf 99999757654------22111545893699961134556698369846857668------4---221----------29
Q gi|254780952|r 549 EGFVLQAPLRE------NLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLL------P---HQL----------SI 603 (685)
Q Consensus 549 ~~fl~~~~~~~------~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~------P---~~~----------~~ 603 (685)
..|...+...+ ...+...|.+.|+|||||+|||||||+||+|+..+-.= + |.. ..
T Consensus 797 r~l~~~i~~~~~~~~~e~~~rl~sD~~~vkI~TiHkSKGLeYpiV~lPf~~~~~~~~~~~~~~~Yh~~~~~~~~~d~~~~ 876 (1324)
T TIGR00609 797 RWLEKQISKEEEEELEEEIIRLESDAELVKIVTIHKSKGLEYPIVFLPFITDAKKSDDSSKLAIYHDDGSRKLLLDLNKL 876 (1324)
T ss_pred HHHHHHCCCCCCCCCCHHHCCCCCCCCCEEEEEEEEECCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 67898266888887313340634611441477887412458870202666567678851578887775224666635502
Q ss_pred -----------CHHHHHHHHHHHHHHHHHHHHEEEEEECCC
Q ss_conf -----------967878999999999858641169983132
Q gi|254780952|r 604 -----------NEGNVEGERRLAYVGITRAKKKCHLFYTIN 633 (685)
Q Consensus 604 -----------~~~~~eEErRL~YVA~TRAk~~L~l~~~~~ 633 (685)
+++.+.|+.||||||+|||+.+|+|..+..
T Consensus 877 ~~~~~~~~~~~~~e~~~E~lRllYVAlTRA~~~l~~~~a~~ 917 (1324)
T TIGR00609 877 EEQRRTVKKLARDERLAEDLRLLYVALTRAKKQLFIGLAPL 917 (1324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14789998788888767666689999999999988532356
No 15
>KOG2108 consensus
Probab=100.00 E-value=0 Score=393.31 Aligned_cols=423 Identities=24% Similarity=0.284 Sum_probs=277.9
Q ss_pred CCCHH-HHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHH
Q ss_conf 32158-88762998899998538989669995889883589999999999808999788676211479999999999985
Q gi|254780952|r 20 PSCVP-NYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACY 98 (685)
Q Consensus 20 ~~~~~-~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~ 98 (685)
|.+|. .+.+-||.+|+..+..+.. -..|+||||||||.+++.|++|++....++|+.|++.||||+||++|++|+...
T Consensus 3 ~~~i~ds~~~~l~~~q~~~~~~~~~-~~rviagpgsgkt~~lt~~v~yli~~~~ik~~eI~~~t~tnka~~~~~~~l~~i 81 (853)
T KOG2108 3 NRGIWDSLYSLLNKSQRFSALSPLR-RKRVIAGPGSGKTLVLTERVAYLINFNNIKPDEILINTGTNKAADSIKLNLIAI 81 (853)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCC-CCCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 7206677666531220155438876-020310687785210347777887426888898988746881078999868887
Q ss_pred CCCCCC---EEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH----HHHHCCCCCCCCCHHH-H---HHHHHH
Q ss_conf 164587---8961789999999984998487989807289999999999----9997399854789899-9---999866
Q gi|254780952|r 99 LGEKIP---RIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQ----LLKDLQIDDKDYDPHE-V---IEKIDY 167 (685)
Q Consensus 99 l~~~~~---~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~---~~~i~~ 167 (685)
++.... -++||||.|...+-+++...++..++++.+..+-..++.. ++.....-...-.-.. + ....+.
T Consensus 82 l~~~~~sk~Ii~~f~sia~~~~l~~~~l~~l~e~~~i~~~~~~~ail~~~~~~~l~~i~~~~ss~~r~~~l~~~~~~~~~ 161 (853)
T KOG2108 82 LRTSKCSKEIIGTFHSIAVKYSLRDGPLLPLSENCRIQDLPDTYAILGDNIWALLAKIKLPSSSSNRKQRLLFPLRRPDS 161 (853)
T ss_pred HCCCCCCHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHCCCCCCCCC
T ss_conf 53777772214665405799986366665322146764112078775335899999753522022465540244246642
Q ss_pred H--HHCC------------CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCCE
Q ss_conf 7--5415------------8964612114653899999999975577775300111000124543012068897401221
Q gi|254780952|r 168 W--QNRG------------WNPKDIPQSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKI 233 (685)
Q Consensus 168 ~--k~~~------------~~~~~~~~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~r~ 233 (685)
+ +... ..+++........+.+ ...|..||. ..||+|++.....+++.|.+.. +..
T Consensus 162 t~~~~n~~~~~~~~~~~~~~~~e~~i~~~~~~d~~--~~~~~~~qt------l~dsct~~~~~~~~~q~~~~~~---n~~ 230 (853)
T KOG2108 162 TVTKPNVTETLYSIAVLLLAMFEEGINVSNRDDYE--IYYYLYLQT------LEDSCTLAMNSLKVLQRPRVCS---NKI 230 (853)
T ss_pred CEECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHH--HHHHHHHCC------CCCHHHHHHHHHHHHHCCHHCC---CCC
T ss_conf 11157733475407799988504555521111235--557765311------3346788888888751312104---766
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHC--CCCCCEEEEEEECCCCCH
Q ss_conf 025321077511346887877511112678875999953068863113322013455420--576640678761267514
Q gi|254780952|r 234 PYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQK--DFKDANIIKLEQNYRSTT 311 (685)
Q Consensus 234 ~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~--~f~~~~~i~L~~NyRS~~ 311 (685)
.|+|||||||++++|+..+..+ . +..+.+|||+|||||+|||+.+..+..... .|.......|-.||||++
T Consensus 231 t~vLvdEfqd~~~~qL~p~~~~-k------~~~~a~tGdt~qsIy~fa~~~a~~~~l~~~f~~~~~~~~~~lf~n~rs~~ 303 (853)
T KOG2108 231 THVLVDEFQDILKIQLEPLQVL-K------IKAFAGTGDTDQSIYKFAGKWAEIRILYVTFNKFIATQAERLFPNNRSCK 303 (853)
T ss_pred CEEEEECCCCCCCCCCCHHHHH-H------HHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCH
T ss_conf 3377631344332245559998-6------52120116806889987321056778887607077788998701232347
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCH-HHHHHHHHC--CCCCHHHHEECCCHHHHH
Q ss_conf 67875202444343201012222102355674488731553100000000-136665311--365303111010014788
Q gi|254780952|r 312 HILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQ-EIINIQNTG--MSLNNIAILVRTSWQTRK 388 (685)
Q Consensus 312 ~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~Ea~~Ia~-~I~~l~~~g--~~~~diAVL~Rtn~~~~~ 388 (685)
+|...|-..|.....+-.|.+....- +-.-...+..++...-+|.++++ ++..+.... ..+.++|+|+|++++...
T Consensus 304 ~ih~la~~~I~~~~~~~kk~~~~~~~-ps~~~~~l~~~~~~f~kA~~~~~~~~~~~vaa~~eft~n~h~~l~cs~s~~~~ 382 (853)
T KOG2108 304 TIHSLAYGAIGRQYQEKKKLLLRKLT-PSELNSVLAEFKGGFPKAKLKCRTEENFLVAADIEFTINDHAILWCSSSQLSS 382 (853)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHCCC
T ss_conf 88999999976655301003532258-30035553136666640222475265434215721333003454321023032
Q ss_pred HHHHHHCCCCCEEEEC-CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 9987520233203203-31000112102899999884663024575304687546502466888878877398468
Q gi|254780952|r 389 FEDAFLEQEIPHKVIG-GSFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLL 463 (685)
Q Consensus 389 l~~~L~~~gIP~~~~g-~~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~ 463 (685)
++.+|...++||+..+ .+|+++.+.++++.++++..+ .+..++..+++.|.|+++++..+.+.......+.+-+
T Consensus 383 ~~~v~ve~~~~~k~i~~~sflds~~~r~~l~~~~~~~n-~~~d~~l~~l~~~~~~~~~a~~d~Ii~D~~~d~t~c~ 457 (853)
T KOG2108 383 FESVLVEQREKYKLIAVASFLDSNERRLGLNYEKLHAN-MTPDGYLKLLQLPERPNGLAKFDYIILDEAQDCTPCI 457 (853)
T ss_pred HHHHHHHHCCCHHHEEEHHHHCHHHHHHHHHHHHHHCC-CCCHHHHHHCCCCCCCCCCCCCCEEEEHHHHCCCHHH
T ss_conf 67899873374323210244321567777889986456-8841267650355678863300034411430576277
No 16
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B; InterPro: IPR014140 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in others. AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. This entry describes the ATP-dependent nuclease subunit B (AddB/RexB) protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous and functionally equivalent, merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function..
Probab=100.00 E-value=3.2e-29 Score=219.26 Aligned_cols=570 Identities=18% Similarity=0.251 Sum_probs=344.0
Q ss_pred EEEEEC-CCCCHHHHHHHHHHHHHHCCCCCHHHEEEE-----EECHHHHHHHHHHHHHHCC---CCCCEEEEHHHHHHHH
Q ss_conf 699958-898835899999999998089997886762-----1147999999999998516---4587896178999999
Q gi|254780952|r 46 LLILAG-AGTGKTTVLIARMLHLICHKEIPPSKILAM-----TFTNQAIQEMKNRLACYLG---EKIPRIQTFHSFCASI 116 (685)
Q Consensus 46 ~lV~Ag-aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~i-----TFT~~AA~el~~Ri~~~l~---~~~~~i~T~Hsf~~~i 116 (685)
+.+++| ||||||+.+..-|..=|.+.-+ ...|..| ||- |-..+....+ .=.++|=-|--+|+|+
T Consensus 3 l~~i~GRaGtGKs~~~i~~Ik~ki~~~p~-g~~iillVPdQ~TFq------~E~~l~~~~e~~g~lraqvlSF~RLA~rV 75 (1192)
T TIGR02773 3 LRFIYGRAGTGKSTFIIDEIKQKIKENPL-GKPIILLVPDQMTFQ------MEKALLNDIELNGSLRAQVLSFSRLAWRV 75 (1192)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCEEEECCCCCHHH------HHHHHHCCCCCCCCCCCEEEEHHHHHHHH
T ss_conf 17998326875457888999999710789-895378768852489------99998167776874441132044765568
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC--------HHHHHHHHHHHHHCCCCHHHHHHCC------
Q ss_conf 99849984879898072899999999999997399854789--------8999999866754158964612114------
Q gi|254780952|r 117 LRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYD--------PHEVIEKIDYWQNRGWNPKDIPQSS------ 182 (685)
Q Consensus 117 l~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~~k~~~~~~~~~~~~~------ 182 (685)
+++-| |+.+. .++..-...+|+.++.+.+-+-+-|. ...+-..|.-+|...++|+++....
T Consensus 76 lqE~G---G~tr~--~l~~~G~~M~i~K~~ee~k~~lkvy~~A~~~~GF~~~l~~~itEfKry~v~pe~L~~~~~~~~~~ 150 (1192)
T TIGR02773 76 LQETG---GLTRQ--FLTQAGIEMLIRKVIEEHKDELKVYQKASRKKGFLAKLSEMITEFKRYEVTPEDLRKAAEELEDS 150 (1192)
T ss_pred HHHCC---CCHHH--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 76337---60267--79887589999999986011124788862325348999999887622068988999998610132
Q ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------6538999999999755777753001110001245430120688974012210253210775113468878775
Q gi|254780952|r 183 -------LTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLL 255 (685)
Q Consensus 183 -------~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L 255 (685)
.....+-+.-||..|+..|. .+.+|=.|-|....+-|...+.... -+|.||+|.--+|.|+.+|..|
T Consensus 151 ~~~~~~~l~~KL~Dl~~iY~~fe~~L~-~~y~~~ED~L~LL~~~l~~s~~~~~-----AeiyIDGF~~Ftp~e~~Vi~~L 224 (1192)
T TIGR02773 151 ERRSERVLKEKLEDLSLIYQEFEERLA-DEYIDSEDQLNLLAEKLEQSELLKG-----AEIYIDGFTSFTPQEYSVIEKL 224 (1192)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHCC-----CEEEEECCCCCCHHHHHHHHHH
T ss_conf 024416677668999999999999870-7757733448899987214254358-----5179835657677999999998
Q ss_pred HCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHH-----------HHHHCCCCCC---EEEEEEE---C-CCCCHHHHHHH
Q ss_conf 111126788759999530688631133220134-----------5542057664---0678761---2-67514678752
Q gi|254780952|r 256 CQKEDSKQGARICCVGDENQCIYEWRGAQFSHI-----------LNFQKDFKDA---NIIKLEQ---N-YRSTTHILNTA 317 (685)
Q Consensus 256 ~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~-----------~~f~~~f~~~---~~i~L~~---N-yRS~~~Ii~~a 317 (685)
...... .+ +++-=|+-.-+ ++.+|.-+ .++.++- +. ..+.+.+ | |.-++.+.-+.
T Consensus 225 ~k~a~~-vt--v~Lt~D~~~~~---~~~de~~LF~~t~~t~~~L~~la~~~-gi~v~~~~~~~~~~~~RF~~~~~LA~LE 297 (1192)
T TIGR02773 225 MKKAKK-VT--VSLTLDEPEYK---EEEDELDLFRATSETYYRLKELAKEL-GIEVEEPIFLNEERPNRFKKNKELAHLE 297 (1192)
T ss_pred HHHCCE-EE--EEEECCCCCCC---CCCCCHHHCCCCHHHHHHHHHHHHHC-CCCCCHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 531252-47--99854861101---57885322258678999999999874-9850103442133233114685489999
Q ss_pred HHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHH-HHCCCCCHHHHEECC-CHHHHHHHHHHHC
Q ss_conf 02444343201012222102355674488731553100000000136665-311365303111010-0147889987520
Q gi|254780952|r 318 NKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQ-NTGMSLNNIAILVRT-SWQTRKFEDAFLE 395 (685)
Q Consensus 318 n~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~-~~g~~~~diAVL~Rt-n~~~~~l~~~L~~ 395 (685)
+.+-++- .....+....+.++.+.+..+|.+.||++|.++. +.++.|+|||||+|. .....-+...|..
T Consensus 298 ~~f~a~p---------~~~y~~~~~~l~i~~A~n~r~EvE~vAr~I~~L~Rdk~YRY~Diail~Rd~~~Y~~Lv~~vf~~ 368 (1192)
T TIGR02773 298 KQFDARP---------FKAYKEKEKSLSIFEANNRRAEVEGVARDILRLVRDKQYRYKDIAILTRDLEDYEKLVEAVFSD 368 (1192)
T ss_pred HHHHCCC---------CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHEECCHHHHHHHHHHHHCC
T ss_conf 8840167---------6676677656221110576135678999999997416784000342003821268999998513
Q ss_pred CCCCEEEECC-CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCC-C-----CCC-CHHHHHHHHHHHHHCCCCH-HHHH
Q ss_conf 2332032033-1000112102899999884663024575304687-5-----465-0246688887887739846-8999
Q gi|254780952|r 396 QEIPHKVIGG-SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCP-K-----RGI-GKESLHKIQYHASQHHISL-LQAS 466 (685)
Q Consensus 396 ~gIP~~~~g~-~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p-~-----~gi-~~~~l~~l~~~a~~~~~~~-~~~~ 466 (685)
++|||-|-.. +...+|-|-.+-|.|.++..+....+..|++..- . .+. +...+..|.++.-++|+-- ++++
T Consensus 369 YeIP~fID~K~~m~~hPlIe~irS~levi~~NW~ye~~Fr~lKT~ll~~~~~~~~~~~~~iD~LENYVle~GIkg~~rW~ 448 (1192)
T TIGR02773 369 YEIPYFIDKKRSMTNHPLIEFIRSILEVIQKNWRYEAVFRYLKTGLLFNVEEKFIDLRELIDLLENYVLEYGIKGKKRWW 448 (1192)
T ss_pred CCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCEEEEEECCCCCEEC
T ss_conf 77870134650102264866889999997615881267888765036776545436798864341201143045633113
Q ss_pred HHH---------HCCC--CCCHHHH---HHHHHHH----HHHHHHHHHCC-CCC---CHHHHHHHHH-HCCCHHHHHC--
Q ss_conf 764---------1046--7997785---4334343----33566653102-466---0222333477-7096678850--
Q gi|254780952|r 467 EKL---------IDSG--QFRPQIR---QSLQNFV----KDIRRWNNCSK-KMD---PAPIANMILE-QSGYMAMWKN-- 521 (685)
Q Consensus 467 ~~~---------~~~~--~~~~~~~---~~l~~~~----~~l~~~~~~~~-~~~---~~~l~~~i~~-~~~~~~~~~~-- 521 (685)
... .+.. .....-+ +.+.++. .-|..+..... ..+ ...++...++ ...+.+.+..
T Consensus 449 ~E~~~~y~~f~~~~~~~~~~td~E~e~~e~~N~~R~~iv~pl~~~~~~~~~aktvke~A~alY~fLes~~d~p~~L~~~r 528 (1192)
T TIGR02773 449 KEKWFKYRRFRGLDEKEFAQTDEERELQEKLNELREDIVDPLETFEKRLKKAKTVKEFATALYEFLESELDIPEKLEKFR 528 (1192)
T ss_pred CCCEEEEEHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 68645430000256212024533578899987657775017899999853133647999999998877413468889999
Q ss_pred -----CCCHHH---HHHHHHH----HHHHHHHHHHCC-CHHHHHHHHHHHH---HHHHCCCCCCCEEEEEECCCCCCCCC
Q ss_conf -----688455---8988843----999999983026-8899999757654---22111545893699961134556698
Q gi|254780952|r 522 -----NKSSEK---SQERLDN----LRELLSIIEKHE-TLEGFVLQAPLRE---NLGSFIPDSNCIQIMTLHAAKGLEFD 585 (685)
Q Consensus 522 -----~~~~~~---~~~~l~~----l~~l~~~~~~~~-sl~~fl~~~~~~~---~~~~~~~~~d~V~i~TIH~SKGLEfd 585 (685)
....+. ..+.|+. |.+++.++.+-. +|..|..-+...- +....+|.-|-|.|.||-.||=.--.
T Consensus 529 ~~~~~~G~~e~A~e~~Q~Wdavi~lLde~VevlG~E~~~L~~F~~~~~iGle~l~fs~iPpaLDqV~vg~~d~~k~~n~k 608 (1192)
T TIGR02773 529 DRFDEDGRLEEAREYEQIWDAVIQLLDEMVEVLGEEEMDLNEFQEVIDIGLEQLEFSLIPPALDQVLVGDMDRAKMSNTK 608 (1192)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCHHHCEEEECCEEEEEECCCC
T ss_conf 97641784022356899999999999999887378701789999999843012434227720485665131100005872
Q ss_pred EEEECCCCCCCCCCHHCC----CHH-------------------HHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCC
Q ss_conf 369846857668422129----967-------------------878999999999858641169983132112576543
Q gi|254780952|r 586 TVFISGWEQGLLPHQLSI----NEG-------------------NVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRV 642 (685)
Q Consensus 586 ~V~i~gl~~g~~P~~~~~----~~~-------------------~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~ 642 (685)
+.|++|+|||+||....- ++. .+=||.=|.|.|||+|.++|++|||.. .
T Consensus 609 ~~y~lG~NDGv~P~~~~e~GilsD~eR~~L~~~~q~~L~~~~~~~~~dE~Fl~Y~A~t~ase~L~~SYpla--------D 680 (1192)
T TIGR02773 609 VIYLLGVNDGVLPARSKEEGILSDEERELLEQKGQVELSSTSKEKLLDEQFLVYTAFTSASERLKVSYPLA--------D 680 (1192)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--------C
T ss_conf 69997457765688877677546899999985165012630233211578999998707855368852135--------6
Q ss_pred CCCCCCCCCCHHHHC
Q ss_conf 335556888723314
Q gi|254780952|r 643 ERYQPSQVSQFLLEL 657 (685)
Q Consensus 643 ~~~~~~~~SrFl~El 657 (685)
..+....||.|+.-|
T Consensus 681 ~EGk~~~pS~~i~rl 695 (1192)
T TIGR02773 681 AEGKSLRPSIIIHRL 695 (1192)
T ss_pred CCCCCCCCCHHHHHH
T ss_conf 124124756378999
No 17
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=99.96 E-value=6.3e-28 Score=210.41 Aligned_cols=345 Identities=20% Similarity=0.236 Sum_probs=171.9
Q ss_pred CCHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--CCHHHEEEEEECHHHHHHHHHHHHHH
Q ss_conf 2158887629988999985389896699958898835899999999998089--99788676211479999999999985
Q gi|254780952|r 21 SCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKE--IPPSKILAMTFTNQAIQEMKNRLACY 98 (685)
Q Consensus 21 ~~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~--~~p~~Il~iTFT~~AA~el~~Ri~~~ 98 (685)
+-|-++-+.+-.||-++|....+++++|.++||||||++-.+|+|||+.... ...+.||++.-+ +-=.|-..++---
T Consensus 204 ~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN-~vFleYis~VLPe 282 (747)
T COG3973 204 AKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPN-RVFLEYISRVLPE 282 (747)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCC-HHHHHHHHHHCHH
T ss_conf 127789998617677787555787489955888871358899999998535662466865998283-8999999875544
Q ss_pred CCCCCCEEEEHHHHHHHHHHHH----------HHHCCCCC-------CCCC-----------------------------
Q ss_conf 1645878961789999999984----------99848798-------9807-----------------------------
Q gi|254780952|r 99 LGEKIPRIQTFHSFCASILRKH----------GEVVGLPT-------DFAI----------------------------- 132 (685)
Q Consensus 99 l~~~~~~i~T~Hsf~~~il~~~----------~~~~g~~~-------~~~i----------------------------- 132 (685)
||+..+...||-.|+..||-.- -...+... +|..
T Consensus 283 LGe~~V~q~Tf~e~a~~iLg~~s~d~~lt~~~~e~~~~d~~~~~a~~a~k~~~~~~~~i~~~v~~is~e~~v~k~i~~~~ 362 (747)
T COG3973 283 LGEEGVVQETFEEWALAILGLKSEDLELTRRTLEKLLMDTDLGIAALAWKRSLLFGDAIDLDVVRISLEKKVGKDITGAG 362 (747)
T ss_pred HCCCCEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 16686365049998887618897115789998765414507778777763025789999877654555322677766434
Q ss_pred ---CCHHHHHHHHHHHHHHCCC-------------CCCCCCHH---H---------HHHH-HHHHHH---CCCCHHH-HH
Q ss_conf ---2899999999999997399-------------85478989---9---------9999-866754---1589646-12
Q gi|254780952|r 133 ---LDSAESRTIIKQLLKDLQI-------------DDKDYDPH---E---------VIEK-IDYWQN---RGWNPKD-IP 179 (685)
Q Consensus 133 ---~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~---~---------~~~~-i~~~k~---~~~~~~~-~~ 179 (685)
.+..+.+.++.+.+....+ +.++.... + .... -+.|++ .-..+++ ..
T Consensus 363 ~~~~sk~eir~lF~e~l~~~~l~~r~~~i~~~~~~~ln~l~~~~~dk~~~~~~~~~~q~~~ed~v~rlr~~~~l~ee~~n 442 (747)
T COG3973 363 LQLNSKVEIRGLFTESLSESPLADRLHDIFAQDLLKLNDLSAAIRDKLDDLLDIAFRQKVYEDAVKRLRPQDVLPEEEEN 442 (747)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 77764788899999876329577788888631542012456666543446777998888899999863210357676665
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHH---------------------------------------HHCCCCCCCHHHHHHHC
Q ss_conf 114653899999999975577775---------------------------------------30011100012454301
Q gi|254780952|r 180 QSSLTEDAEIPKAIYIQYVAYLQK---------------------------------------TKSCDFGGLIIKTIEVL 220 (685)
Q Consensus 180 ~~~~~~~~~~~~~iy~~Y~~~l~~---------------------------------------~~~lDf~Dll~~a~~ll 220 (685)
... ....+..|...++.+.. .++++.+|.....+-
T Consensus 443 ~~~----~~vaa~~y~e~~k~~~l~~~L~r~~~s~~~~~el~~g~~~~e~~r~~ge~~~~~~~d~~l~~dD~a~~lyi-- 516 (747)
T COG3973 443 SVR----INVAAANYDEAQKSLKLRVLLDRFFASTTPLTELRRGLADAEALRAIGEAKWREQIDKALLSDDVAPRLYI-- 516 (747)
T ss_pred HHC----CHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--
T ss_conf 531----22555346777404008899886531231678986478788999873035444321000002114356650--
Q ss_pred CCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCCC-CC-HHHHHHHCCCCCC
Q ss_conf 206889740122102532107751134688787751111267887599995306886311332-20-1345542057664
Q gi|254780952|r 221 HHPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGA-QF-SHILNFQKDFKDA 298 (685)
Q Consensus 221 ~~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA-~~-~~~~~f~~~f~~~ 298 (685)
+.+-=-..-.-+++|++|||.||-++.|+.-++.|+.. ++.++|||-.|+||---|- +| +.+..|-++ ++.
T Consensus 517 kd~ldG~k~~~~~kh~vIDeaqdys~~q~~~~r~l~~~------as~tivgd~gq~i~~~~~e~~~~e~~~~~fed-~~~ 589 (747)
T COG3973 517 KDPLDGIKTERRLKHTVIDEAQDYSRFQFTDNRTLAER------ASMTIVGDYGQVIYDEAQELSPMERMDVFFED-PSF 589 (747)
T ss_pred CCCCCCCCCCCCCCCEEECHHHHCCHHHHHHHHHHHHH------CCCEEECCCCCEEHHHHCCCCHHHHHHHHHHC-CCC
T ss_conf 13234665542033225513443340245887644320------36447624785532201226879998888728-970
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHH
Q ss_conf 06787612675146787520244434320101222210235567448873155310000000013666531136530311
Q gi|254780952|r 299 NIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAI 378 (685)
Q Consensus 299 ~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAV 378 (685)
+-+.|..+|||+.+|+++||.+.. .+.+- .+...+++ .+..+.+...+.-.....+.|-.+...|. +.|||
T Consensus 590 e~v~l~~syrSt~eI~efan~~l~---d~~~~--~p~~rsge--~p~~i~~~~ne~l~qr~~~ii~~mkk~~~--etiaV 660 (747)
T COG3973 590 EYVGLIASYRSTAEIDEFANSLLP---DRFRI--HPLTRSGE--KPAVIMSVANEELVQRNPDIIPRMKKRGS--ETIAV 660 (747)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCC---CCCCC--CHHHCCCC--CCEEEECCCHHHHHHHHHHHHHHHHHCCC--CCEEE
T ss_conf 543245652585889999998632---77766--61211788--76221111339898750778888875278--71699
Q ss_pred EECCCHHHHH
Q ss_conf 1010014788
Q gi|254780952|r 379 LVRTSWQTRK 388 (685)
Q Consensus 379 L~Rtn~~~~~ 388 (685)
+|.+-+++..
T Consensus 661 i~kt~~d~~~ 670 (747)
T COG3973 661 ICKTDHDCKA 670 (747)
T ss_pred ECCCHHHHHH
T ss_conf 7776789999
No 18
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.5e-24 Score=187.23 Aligned_cols=553 Identities=16% Similarity=0.220 Sum_probs=312.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCC---CEEEEHHHHHHHHHHHHHHH
Q ss_conf 999588988358999999999980899978867621147999999999998516458---78961789999999984998
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKI---PRIQTFHSFCASILRKHGEV 123 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~---~~i~T~Hsf~~~il~~~~~~ 123 (685)
++..-+|||||+-|++-+...+..+ ..|..|--+- -.=+|-.-+..+++..+ ..|.+|.-++++|+.+-|.
T Consensus 5 ~lyg~~gtgkT~~l~~e~~~~~~~g----kpviyIvP~q-~sFe~E~~~L~~~~~~g~~~i~V~~F~rLa~~i~~e~g~- 78 (1108)
T COG3857 5 LLYGRAGTGKTEILTEEIQEELEKG----KPVIYIVPSQ-MSFEKEKEILERLRQGGSFRIQVTRFKRLAYYILQETGG- 78 (1108)
T ss_pred EEHHHCCCCHHHHHHHHHHHHHHCC----CCEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHCCC-
T ss_conf 6414202338899999999999749----8179983662-207878999707244870258998789889999986077-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 48798980728999999999999973998--------5478989999998667541589646121146538999999999
Q gi|254780952|r 124 VGLPTDFAILDSAESRTIIKQLLKDLQID--------DKDYDPHEVIEKIDYWQNRGWNPKDIPQSSLTEDAEIPKAIYI 195 (685)
Q Consensus 124 ~g~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~iy~ 195 (685)
+ .-+-+++.....++.+++.+..-+ ++.--.+++...+..+|..++++++++........+..-.+..
T Consensus 79 ---~-Sk~~L~~~g~~Mlfyk~l~e~k~~l~vy~~~~~~~gF~~~l~el~~E~Kk~~lsve~L~~~~~~~~~~kl~dl~l 154 (1108)
T COG3857 79 ---P-SKTHLGDTGLSMLFYKILEELKKELKVYGSLADKSGFIEQLAELYTEFKKYQLSVEDLEDTADEQSLKKLHDLSL 154 (1108)
T ss_pred ---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHH
T ss_conf ---2-032221204899999999975788788886510225899999999999985488988744545144543443999
Q ss_pred HHHHHHH--HHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE-
Q ss_conf 7557777--5300111000124543012-06889740122102532107751134688787751111267887599995-
Q gi|254780952|r 196 QYVAYLQ--KTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVG- 271 (685)
Q Consensus 196 ~Y~~~l~--~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVG- 271 (685)
.|++... ..+.+|.+|-+..+..... .+.+ .. -+|.||.|-+-++.|+.+|..|-... ..++ ||
T Consensus 155 iyee~~~~l~~~~l~~ed~l~~lad~~~~s~~L-~~-----~~IvIDGFt~FS~~E~~vIe~L~~~~-----~~v~-I~l 222 (1108)
T COG3857 155 IYEEFEANLYNNYLDPEDSLSRLADKIKKSEQL-KQ-----AAIVIDGFTRFSPEEYRVIELLMKKC-----ARVT-IGL 222 (1108)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH-CC-----CEEEEECCCCCCHHHHHHHHHHHHCC-----CEEE-EEE
T ss_conf 999999988746688277899998726331655-46-----34998154447888999999998418-----5599-997
Q ss_pred --C--------HHHHHHHCCCCCCHHHHHHHCCCC--C--CEEEEEEEC-CCCCHHHHHHHHHHHHHHHHHCCHHHHHHC
Q ss_conf --3--------068863113322013455420576--6--406787612-675146787520244434320101222210
Q gi|254780952|r 272 --D--------ENQCIYEWRGAQFSHILNFQKDFK--D--ANIIKLEQN-YRSTTHILNTANKLISHNKQRFDKKLFTQR 336 (685)
Q Consensus 272 --D--------~dQsIY~fRGA~~~~~~~f~~~f~--~--~~~i~L~~N-yRS~~~Ii~~an~li~~n~~r~~k~l~~~~ 336 (685)
| .+=+||+ |......++.+-+. + ++.+.+.-+ |--.+......|.+-. .+ . ..
T Consensus 223 t~d~~~y~~~~~~~~if~---~s~~~l~~L~~~a~~~~i~~~~~~~~~~~~~~~~~L~~l~~~~~~-----~~--~--~~ 290 (1108)
T COG3857 223 TADKKAYTKGSEEGNIFR---ASKKTLFRLLSKAEELNISIEQYNEVLYKFTKLQDLAHLENDFDQ-----LP--I--EI 290 (1108)
T ss_pred ECCCHHHCCCCCCCHHHH---HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH-----CC--C--HH
T ss_conf 337222105743223989---769999999988631466410777787764033668999866530-----44--2--11
Q ss_pred CCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECC-CHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCH
Q ss_conf 2355674488731553100000000136665311365303111010-01478899875202332032033-100011210
Q gi|254780952|r 337 DCHDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRT-SWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIR 414 (685)
Q Consensus 337 ~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rt-n~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~ 414 (685)
...+...+.++.+.+..+|.+.||+.|.+....|+.|+|||||+|. .+.-..+...+...+|||.+.+. +.-++|-|.
T Consensus 291 ~~~~~~~i~I~qa~n~keEiEgvAr~Irq~i~eg~rYkDiaIL~gD~~aYe~~l~~If~~y~IP~fidk~~sM~~HPli~ 370 (1108)
T COG3857 291 YAKDADHISIWQASNQKEEIEGVAREIRQKIREGYRYKDIAILLGDPAAYELTLKEIFKLYEIPFFIDKKRSMADHPLIE 370 (1108)
T ss_pred HCCCCCCEEHHHHHCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHH
T ss_conf 00575434267520559999999999999861487512043331786889999999998708873425421033296899
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCCC-CCCCCHH-HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCH-----HHHHHHHHHH
Q ss_conf 2899999884663024575304687-5465024-6688887887739846899976410467997-----7854334343
Q gi|254780952|r 415 DALAYFRLVCQEHRDEDFKRIINCP-KRGIGKE-SLHKIQYHASQHHISLLQASEKLIDSGQFRP-----QIRQSLQNFV 487 (685)
Q Consensus 415 ~lla~Lr~i~~p~d~~a~~~il~~p-~~gi~~~-~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~ 487 (685)
.+=+.+++.........+.+++..- ..+.... .+..+.+.....++.-...+.+......+.. ........++
T Consensus 371 fi~Sll~~~~~NW~~e~vl~llKt~~~f~~~~~~~iD~lEnYvl~~GI~G~~kw~k~f~~~~~~~~~~~~~lne~r~~il 450 (1108)
T COG3857 371 FIESLLDIKRYNWRYEPVLNLLKTDVLFDSNESEDIDLLENYVLAAGIKGKKKWTKLFTYEHFRKIENLERLNETRLDIL 450 (1108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 99999999984544658999997512445566477899999999936664044666755987604126999999998776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH---HHHCCCHHHHHC-------CCC---HHH----HHHHHHHHHHHHHHHHHC-CCHH
Q ss_conf 3356665310246602223334---777096678850-------688---455----898884399999998302-6889
Q gi|254780952|r 488 KDIRRWNNCSKKMDPAPIANMI---LEQSGYMAMWKN-------NKS---SEK----SQERLDNLRELLSIIEKH-ETLE 549 (685)
Q Consensus 488 ~~l~~~~~~~~~~~~~~l~~~i---~~~~~~~~~~~~-------~~~---~~~----~~~~l~~l~~l~~~~~~~-~sl~ 549 (685)
.-|..+....+..+..+++..+ ++.......+.. ... .+. +..+.+-+.+|+.+..+- -+++
T Consensus 451 ~pL~~l~~~sr~kt~~~~~~al~~~Le~~~v~e~l~~~~~e~~~~g~~~~a~~~~qvW~~~ielLeefv~vfg~e~l~l~ 530 (1108)
T COG3857 451 HPLETLLKMSRAKTVKELAQALYEFLEEGRVPEQLQTERQEAELNGRHVEAEEHEQVWNALIELLEEFVEVFGDEKLSLE 530 (1108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 69999998778888999999999999961489999888877664016898999999999999999999998656733599
Q ss_pred HHHHHHHHH---HHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHC----CCH-----------------
Q ss_conf 999975765---42211154589369996113455669836984685766842212----996-----------------
Q gi|254780952|r 550 GFVLQAPLR---ENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLS----INE----------------- 605 (685)
Q Consensus 550 ~fl~~~~~~---~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~----~~~----------------- 605 (685)
.|+.-+... ......++..|.|.|-|+--+|=+--++||++||++|.||.... +.+
T Consensus 531 ~Fleil~~Gle~~kf~~iP~tlDqV~I~s~dlv~~~~~~~vYaiGmndg~fP~~~~~sglLSDedR~~ln~~~v~l~~~s 610 (1108)
T COG3857 531 LFLEILHIGLESLKFRLIPATLDQVSIGSYDLVKPHTKKFVYAIGMNDGVFPAPHKNSGLLSDEDREYLNQITVELSIAS 610 (1108)
T ss_pred HHHHHHHHHHHHCEEEECCCCCCEEEEECHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCH
T ss_conf 99999997665300243277556577501131232468769998247887888632257666677889875161047514
Q ss_pred -HHHHHHHHHHHHHHHHHHHEEEEEECCC
Q ss_conf -7878999999999858641169983132
Q gi|254780952|r 606 -GNVEGERRLAYVGITRAKKKCHLFYTIN 633 (685)
Q Consensus 606 -~~~eEErRL~YVA~TRAk~~L~l~~~~~ 633 (685)
..+-+++=+.|++||+|++.|++|||.-
T Consensus 611 ~~n~~~~~f~~y~~~~~a~~~L~lSyp~~ 639 (1108)
T COG3857 611 KENLKKNQFTVYSLVNSAKEELVLSYPIA 639 (1108)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEHH
T ss_conf 66787656899999853577189971244
No 19
>TIGR03623 probable DNA repair protein. Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Probab=99.84 E-value=1.4e-15 Score=125.75 Aligned_cols=491 Identities=15% Similarity=0.170 Sum_probs=264.0
Q ss_pred EEEEEECHHHHHHHHHHHHH---HCCCC---CCEEEEHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHHC
Q ss_conf 67621147999999999998---51645---878961789999999984998487989--80728999999999999973
Q gi|254780952|r 78 ILAMTFTNQAIQEMKNRLAC---YLGEK---IPRIQTFHSFCASILRKHGEVVGLPTD--FAILDSAESRTIIKQLLKDL 149 (685)
Q Consensus 78 Il~iTFT~~AA~el~~Ri~~---~l~~~---~~~i~T~Hsf~~~il~~~~~~~g~~~~--~~i~~~~~~~~~~~~~~~~~ 149 (685)
-++||=|++-|..++.+... .-|.. .+.|.|+.++..+.-.+.. ..|..+. ..+++..+...+-+++++.-
T Consensus 2 ~lvlT~n~RLar~l~~~~~~~q~~~g~~vw~tp~i~~~~~Wl~~~w~~~~-~~~~~~~~p~~lL~~~qe~~lW~~iI~~~ 80 (874)
T TIGR03623 2 ALVLTANNRLARTLRQEYARAQLAQGKKVWATPDILPWSQWLQRLWEEAL-LTGDAPELPHALLSSFQEQFLWEEVIAQS 80 (874)
T ss_pred CEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHH-HCCCCCCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 47975667999999999999999769951468876249999999999998-44775544144368999999999999727
Q ss_pred CCCCCCCCHHH----HHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHH
Q ss_conf 99854789899----99998667541589646121146538999999999755777753001110001245430120688
Q gi|254780952|r 150 QIDDKDYDPHE----VIEKIDYWQNRGWNPKDIPQSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHV 225 (685)
Q Consensus 150 ~~~~~~~~~~~----~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v 225 (685)
..+..-..+.. +...-..+..-.+.+.+.. ...+++.+.+......|++.+++.+.+|..|+......+++...+
T Consensus 81 ~~~~~Ll~~~~~A~~A~~A~~l~~~w~i~~~~~~-~~~~~e~~~Fl~W~~~f~~~~~~~~~i~~~~l~~~l~~~~~~~~~ 159 (874)
T TIGR03623 81 EPGRALLDVKGAARLAQEAWQLLHEWGLPPDAGE-FSLTEETRLFLDWRTAFEARCRKEGWIDAAQLPEQLLDLLRQGGL 159 (874)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 7665435969999999999999998389942100-257866899999999999999877985777899999999855788
Q ss_pred HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEE
Q ss_conf 97401221025321077511346887877511112678875999953068863113322013455420576640678761
Q gi|254780952|r 226 LKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQ 305 (685)
Q Consensus 226 ~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~ 305 (685)
.....|++.=|-|.+|.|..++..|... |..+..+-+..+
T Consensus 160 -----~~p~~i~l~GFd~l~P~~~~Ll~~L~~~-----g~~v~~~~~~~~------------------------------ 199 (874)
T TIGR03623 160 -----KLPKQIILAGFDELTPQQQALLAALEER-----GVDVQQWLPESE------------------------------ 199 (874)
T ss_pred -----CCCCEEEEEECCCCCHHHHHHHHHHHHC-----CCEEEEECCCCC------------------------------
T ss_conf -----9987289996797998999999999964-----975797366535------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECC-CH
Q ss_conf 26751467875202444343201012222102355674488731553100000000136665311365303111010-01
Q gi|254780952|r 306 NYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRT-SW 384 (685)
Q Consensus 306 NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rt-n~ 384 (685)
....+..+.|.+.++|...+|..+.+..+.+ +-..|||++.. +.
T Consensus 200 ----------------------------------~~~~~~~~~~~d~e~Ei~aaA~Wa~~~l~~~-p~~rigIVvp~L~~ 244 (874)
T TIGR03623 200 ----------------------------------EQASPQRLACADPEDEIRAAARWARQQLEQN-PAARIGVVVPNLEE 244 (874)
T ss_pred ----------------------------------CCCCCCEECCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCHHH
T ss_conf ----------------------------------6675522136997999999999999986228-88638997787798
Q ss_pred HHHHHHHHHHC-------------CCCCEEEECC-CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHH--
Q ss_conf 47889987520-------------2332032033-1000112102899999884663024575304687546502466--
Q gi|254780952|r 385 QTRKFEDAFLE-------------QEIPHKVIGG-SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESL-- 448 (685)
Q Consensus 385 ~~~~l~~~L~~-------------~gIP~~~~g~-~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l-- 448 (685)
.-..++..|.+ ...||++.-| .+-+.|.|++.+.+|++..++.+...+..+++.|..+-+....
T Consensus 245 ~r~~L~~~l~~~l~P~~~~~~~~~~~~~~NiSlG~pL~~~Pli~~AL~lL~l~~~~~~~~~~~~lL~SPy~~~~~~e~~~ 324 (874)
T TIGR03623 245 LRSQLARILDDVLHPQALLPTSADAPRPFNISLGRPLAEEPLVHTALLLLELAQGKLEPEEASALLRSPYIAGAEVEALA 324 (874)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 99999999998728200277654456640223788642178999999999850378789999999829975345420458
Q ss_pred -HHHHHHHH---HCCCCHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHCCCHHHH
Q ss_conf -88887887---73984689997641046--7997785433434333566653102466022233---347770966788
Q gi|254780952|r 449 -HKIQYHAS---QHHISLLQASEKLIDSG--QFRPQIRQSLQNFVKDIRRWNNCSKKMDPAPIAN---MILEQSGYMAMW 519 (685)
Q Consensus 449 -~~l~~~a~---~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~---~i~~~~~~~~~~ 519 (685)
..+..... ....++-+.+....... ...+.....+..+...+.+... ....+..... .+++..|....
T Consensus 325 ra~ld~~lr~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~~s~W~~~f~~~L~~~gwPg~- 401 (874)
T TIGR03623 325 RAQLDARLRRLAEASVTLAQLLKRAGAENKLYLCPLLAELLSNAMAFLQKPSS--TKLLPSEWAARFQRWLKALGWPGD- 401 (874)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHCCCCCC-
T ss_conf 99999999971877678999998743036654687999999999999973143--568989999999999986379755-
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH--HCCCCCCCEEEEEECCCCCCCCCEEEECC
Q ss_conf 5068845589888439999999830------268899999757654221--11545893699961134556698369846
Q gi|254780952|r 520 KNNKSSEKSQERLDNLRELLSIIEK------HETLEGFVLQAPLRENLG--SFIPDSNCIQIMTLHAAKGLEFDTVFISG 591 (685)
Q Consensus 520 ~~~~~~~~~~~~l~~l~~l~~~~~~------~~sl~~fl~~~~~~~~~~--~~~~~~d~V~i~TIH~SKGLEfd~V~i~g 591 (685)
+...+. ..+. +....++++.... .-+..+++..+...-... ....+..+|+||-+.-+-||.||.|+|+|
T Consensus 402 ~~L~S~-EyQ~-~~~~~~~L~~la~Ld~~~~~~~~~eal~~L~~~l~~~~fqp~~~~~~iQVmG~LEa~gl~Fd~lwvlg 479 (874)
T TIGR03623 402 RALDSE-EYQA-VKAWKELLAEFAALDRVSPLLTFSEALRLLRQLAAETLFQPETPEAPIQVLGLLEAAGLQFDALWVMG 479 (874)
T ss_pred CCCCHH-HHHH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHCCCCCCEEEEEC
T ss_conf 667829-9999-99999999999863012445789999999999985257899899997268412443579757178835
Q ss_pred CCCCCCCCHHCCC----------------HHHHH-HHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 8576684221299----------------67878-999999999858641169983132112576543335556888723
Q gi|254780952|r 592 WEQGLLPHQLSIN----------------EGNVE-GERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFL 654 (685)
Q Consensus 592 l~~g~~P~~~~~~----------------~~~~e-EErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl 654 (685)
|++|.||.....+ +...+ +.-+.++-.+..+-..+++||+.... ..+..||+++
T Consensus 480 ~~e~~~P~~~~~~pfiP~~lqr~~~~p~~~~~~~~~~a~~~~~rl~~~A~~v~~Sy~~~~~---------~~~~~pSpLi 550 (874)
T TIGR03623 480 LTDEVWPAPPRPNPFLPLALQRAVGMPHASAERELDYARQVTQRLLRSAPEVVFSYPQRDG---------DRELRPSPLI 550 (874)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC---------CCCCCCCHHH
T ss_conf 8877789999999988999999729999999999999999999998418948998348889---------8535767654
Q ss_pred HHCCC
Q ss_conf 31478
Q gi|254780952|r 655 LELYD 659 (685)
Q Consensus 655 ~El~~ 659 (685)
.+++.
T Consensus 551 ~~~~~ 555 (874)
T TIGR03623 551 AHLPL 555 (874)
T ss_pred HCCCC
T ss_conf 31563
No 20
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=99.84 E-value=8.3e-20 Score=154.68 Aligned_cols=221 Identities=23% Similarity=0.259 Sum_probs=122.6
Q ss_pred CCCHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHC
Q ss_conf 32158887629988999985389896699958898835899999999998089997886762114799999999999851
Q gi|254780952|r 20 PSCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYL 99 (685)
Q Consensus 20 ~~~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l 99 (685)
-.++++-..+++..|++|+.-...|+-.|.+-||||||.+|+++.++|-. .-|-.+|++.-||+.-+.-||.++.+..
T Consensus 153 l~~ieskIanfD~~Q~kaa~~~~~G~qrIrGLAGSGKT~~La~Kaa~lh~--knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 153 LDTIESKIANFDTDQTKAAFQSGFGKQRIRGLAGSGKTELLAHKAAELHS--KNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred HHHHHHHHHCCCCHHHEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 99999988523504231446547734652002478730298877789744--7998638998666788899999999999
Q ss_pred ---CCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf ---64587896178999999998499848798980728999999999999973998547898999999866754158964
Q gi|254780952|r 100 ---GEKIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPK 176 (685)
Q Consensus 100 ---~~~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~ 176 (685)
.+..+.-+|.| || |+ .-|... ..+- .....+...+..-.++.
T Consensus 231 f~~~e~~pdW~~~l-~~------h~-wgG~t~-------------------------~g~y--~~~~~~~~~~~~~fsg~ 275 (660)
T COG3972 231 FMRVEKQPDWGTKL-FC------HN-WGGLTK-------------------------EGFY--GMYRYICHYYEIPFSGF 275 (660)
T ss_pred HHHHHCCCCCCCEE-EE------EC-CCCCCC-------------------------CCCH--HHHHHHHCCCCCCCCCC
T ss_conf 98862488724268-88------43-578788-------------------------8603--88999842665454787
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61211465389999999997557777530011100012454301206889740122102532107751134688787751
Q gi|254780952|r 177 DIPQSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLC 256 (685)
Q Consensus 177 ~~~~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~ 256 (685)
.. . |+- .|-+++..-.- +.-|+||+|||.||.-..=++|.-+++
T Consensus 276 -----g~----------------------~--F~~---aC~eli~~~~~----~~~yD~ilIDE~QDFP~~F~~Lcf~~t 319 (660)
T COG3972 276 -----GN----------------------G--FDA---ACKELIADINN----KKAYDYILIDESQDFPQSFIDLCFMVT 319 (660)
T ss_pred -----CC----------------------C--HHH---HHHHHHHHHHC----CCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf -----74----------------------0--679---99999986425----642317994245547789999999982
Q ss_pred CCCCCCCCCEEEEEECHHHHHHHCCC--------CCCHHH--HHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 11126788759999530688631133--------220134--55420576640678761267514678752024
Q gi|254780952|r 257 QKEDSKQGARICCVGDENQCIYEWRG--------AQFSHI--LNFQKDFKDANIIKLEQNYRSTTHILNTANKL 320 (685)
Q Consensus 257 ~~~~~~~~~~l~vVGD~dQsIY~fRG--------A~~~~~--~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~l 320 (685)
. +..+|...+|.-|+|-++-= -++++= .+|.++ +..-+.|.++||..+..+-+|-+|
T Consensus 320 k-----d~KrlvyAyDelQNls~~~m~ppe~iFg~d~dg~P~V~l~ra--dr~DiVL~kCYRnsp~nLvaAHaL 386 (660)
T COG3972 320 K-----DKKRLVYAYDELQNLSNVKMRPPEEIFGPDSDGEPRVNLARA--DRNDIVLKKCYRNSPKNLVAAHAL 386 (660)
T ss_pred C-----CCCEEEEEHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCC--CCCCCHHHHHHCCCCHHHHHHHHC
T ss_conf 4-----754389865764311156779989964828899954000457--632212788855881566677531
No 21
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=99.80 E-value=3e-18 Score=144.05 Aligned_cols=81 Identities=22% Similarity=0.184 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHCC------CHHHHHHHHCCCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHH
Q ss_conf 6832158887629------988999985389896-699958898835899999999998089997886762114799999
Q gi|254780952|r 18 FVPSCVPNYLKGL------NAQQTHAVTIPDDTP-LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQE 90 (685)
Q Consensus 18 ~~~~~~~~~l~~L------n~~Q~~av~~~~~~~-~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~e 90 (685)
+-+..+...|..| .+-|+.|+......+ ++|.+|||||||+|.+.-++-|+.-..-++-+|....-|=|||.-
T Consensus 130 ~~~~~~~~~L~~lf~~~~~~dwQk~A~a~Al~~~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaAPTGKAAaR 209 (607)
T PRK10875 130 VDEALLAQTLDALFPPGDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAAR 209 (607)
T ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf 99899999999857998885189999999875577899679998778899999999999645899708998822899999
Q ss_pred HHHHHHHH
Q ss_conf 99999985
Q gi|254780952|r 91 MKNRLACY 98 (685)
Q Consensus 91 l~~Ri~~~ 98 (685)
|.|-|...
T Consensus 210 L~Esi~~~ 217 (607)
T PRK10875 210 LTESLGKA 217 (607)
T ss_pred HHHHHHHH
T ss_conf 99999878
No 22
>KOG1803 consensus
Probab=99.78 E-value=4.2e-18 Score=142.98 Aligned_cols=244 Identities=23% Similarity=0.296 Sum_probs=132.3
Q ss_pred HHHCCCHHHHHHHHCCCC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCC
Q ss_conf 876299889999853898--966999588988358999999999980899978867621147999999999998516458
Q gi|254780952|r 26 YLKGLNAQQTHAVTIPDD--TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKI 103 (685)
Q Consensus 26 ~l~~Ln~~Q~~av~~~~~--~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~ 103 (685)
+.+.||.+|++||..... .++.|.++||||||+||++-|..|+..+ ++|||..-||-|.++|.+|+. ..+...
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~----k~VLVcaPSn~AVdNiverl~-~~~~~l 256 (649)
T KOG1803 182 FNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK----KRVLVCAPSNVAVDNIVERLT-HLKLNL 256 (649)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCEEEHHHHHHHHHHCC----CEEEEECCCHHHHHHHHHHHC-CCCCCH
T ss_conf 774323779999999735688357557998884043999999999728----859997673678999998750-035520
Q ss_pred CEEEE---------HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 78961---------789999999984998487989807289999999999999739985478989999998667541589
Q gi|254780952|r 104 PRIQT---------FHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWN 174 (685)
Q Consensus 104 ~~i~T---------~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~ 174 (685)
.++|- -||++.-+-+ . +.....+.+.++ ++..+..
T Consensus 257 ~R~g~paRl~~~~~~~sld~~~~t--------~---------d~~~~~~~~sk~----------------~d~~~~~--- 300 (649)
T KOG1803 257 VRVGHPARLLESVADHSLDLLSNT--------K---------DNSQNAKDISKD----------------IDILFQK--- 300 (649)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHC--------C---------CHHHHHHHHHHH----------------HHHHHHH---
T ss_conf 113755666555304678888714--------7---------413445666777----------------8887652---
Q ss_pred HHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHCCCCCCCHHHHHHHCC--CHH-HHHHCCCCEEHHHHHHHHHHHHHH
Q ss_conf 64612114653899999999---975577775300111000124543012--068-897401221025321077511346
Q gi|254780952|r 175 PKDIPQSSLTEDAEIPKAIY---IQYVAYLQKTKSCDFGGLIIKTIEVLH--HPH-VLKKYHEKIPYIMVDEYQDINTPQ 248 (685)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~iy---~~Y~~~l~~~~~lDf~Dll~~a~~ll~--~~~-v~~~~~~r~~~ilVDEfQDtn~~Q 248 (685)
.....+....+.++ +...+.++++..-.-.+++..+.-.+. ... ........|+.++|||+--.-..|
T Consensus 301 ------~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~n~~VVfaTl~ga~~~~~~~~~fD~vIIDEaaQamE~~ 374 (649)
T KOG1803 301 ------NTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIISNSRVVFATLGGALDRLLRKRTFDLVIIDEAAQAMEPQ 374 (649)
T ss_pred ------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEEEEHHHHHCCCH
T ss_conf ------01033267787799999999999988788888876435616999533101233114678889981254323501
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECHHH---HHHHCC---CC-CCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 887877511112678875999953068---863113---32-20134554205766406787612675146787520244
Q gi|254780952|r 249 YLLLRLLCQKEDSKQGARICCVGDENQ---CIYEWR---GA-QFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLI 321 (685)
Q Consensus 249 ~~ll~~L~~~~~~~~~~~l~vVGD~dQ---sIY~fR---GA-~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li 321 (685)
.++-.|.+ ..+.++|||+| .||+-. |. ....|.++.+.|++.-.+.|+.-||++..|..++|..+
T Consensus 375 -cWipvlk~-------kk~ILaGDp~QLpP~v~S~~a~~~gl~~Sl~erlae~~~~~~~~~Ln~QYRMn~~Im~wsn~~f 446 (649)
T KOG1803 375 -CWIPVLKG-------KKFILAGDPKQLPPTVLSDKAKRGGLQVSLLERLAEKFGNLSKILLNEQYRMNEKIMNWSNEVF 446 (649)
T ss_pred -HHHHHHCC-------CCEEEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCHHHH
T ss_conf -30677627-------7369928800178600242334245123499999987265013234556403688860757653
Q ss_pred HHH
Q ss_conf 434
Q gi|254780952|r 322 SHN 324 (685)
Q Consensus 322 ~~n 324 (685)
-++
T Consensus 447 Y~~ 449 (649)
T KOG1803 447 YNG 449 (649)
T ss_pred CCC
T ss_conf 677
No 23
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=99.75 E-value=4.7e-18 Score=142.65 Aligned_cols=172 Identities=24% Similarity=0.366 Sum_probs=100.5
Q ss_pred HCCCHHHHHHHHCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHC-CCC---------CHHHEEEEEECHHHHHHHHHHHH
Q ss_conf 62998899998538989669-99588988358999999999980-899---------97886762114799999999999
Q gi|254780952|r 28 KGLNAQQTHAVTIPDDTPLL-ILAGAGTGKTTVLIARMLHLICH-KEI---------PPSKILAMTFTNQAIQEMKNRLA 96 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~~~~l-V~AgaGsGKT~~L~~ri~~Ll~~-~~~---------~p~~Il~iTFT~~AA~el~~Ri~ 96 (685)
-+|.++|++|.....+..+. +++||||||||+.= -|+.+-.+ .+. +--.|+.=.-|=+||+-|.|
T Consensus 349 ~~l~~~Qk~AL~~~~~~Kv~iLTGGPGTGKtT~t~-~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl~E--- 424 (769)
T TIGR01448 349 LKLSEEQKEALKTAIQDKVVILTGGPGTGKTTITK-AIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRLAE--- 424 (769)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCC---
T ss_conf 77068899999998609489985778886168999-99999987168775531245677648873774378885110---
Q ss_pred HHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 85164587896178999999998499848798980728999999999999973998547898999999866754158964
Q gi|254780952|r 97 CYLGEKIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPK 176 (685)
Q Consensus 97 ~~l~~~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~ 176 (685)
..|. .-.|||++ +|+.++-
T Consensus 425 -~TG~---~a~TIHRL-----------lG~~~~~---------------------------------------------- 443 (769)
T TIGR01448 425 -VTGL---EALTIHRL-----------LGYGSDT---------------------------------------------- 443 (769)
T ss_pred -CCCC---HHHHHHHH-----------HCCCCCC----------------------------------------------
T ss_conf -0262---12347786-----------3689888----------------------------------------------
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61211465389999999997557777530011100012454301206889740122102532107751134688787751
Q gi|254780952|r 177 DIPQSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLC 256 (685)
Q Consensus 177 ~~~~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~ 256 (685)
..... .++++ --++.|+|||+==.+. |-+-++|+
T Consensus 444 -~~~~k------------------------------------~~~~~-------~~~DL~IvDE~SM~Dt--~L~~~lL~ 477 (769)
T TIGR01448 444 -KSENK------------------------------------NLEDP-------IDADLLIVDESSMVDT--WLASSLLA 477 (769)
T ss_pred -CCCCH------------------------------------HHCCC-------CCCCEEEEECCCHHHH--HHHHHHHH
T ss_conf -73211------------------------------------01134-------7877699814621889--99999986
Q ss_pred CCCCCCCCCEEEEEECHHH--HHHHCCCCCCHH-HHHHHCCCCCCEEEEEEECCC--CCHHHHHHHHHH
Q ss_conf 1112678875999953068--863113322013-455420576640678761267--514678752024
Q gi|254780952|r 257 QKEDSKQGARICCVGDENQ--CIYEWRGAQFSH-ILNFQKDFKDANIIKLEQNYR--STTHILNTANKL 320 (685)
Q Consensus 257 ~~~~~~~~~~l~vVGD~dQ--sIY~fRGA~~~~-~~~f~~~f~~~~~i~L~~NyR--S~~~Ii~~an~l 320 (685)
. -+.++.|.+|||.|| |+ +|.. |.++-+- +-..++.|++=|| -...|+..|-.+
T Consensus 478 a---~P~~a~lllVGD~DQLPSV------~pG~VL~DLi~s-~~iP~~~LT~vyRQ~~~S~Ii~~Ah~~ 536 (769)
T TIGR01448 478 A---VPDHARLLLVGDADQLPSV------GPGQVLKDLIQS-KVIPVTRLTKVYRQAEGSSIITLAHKI 536 (769)
T ss_pred H---CCCCCEEEEECCCCCCCCC------CCCHHHHHHHHC-CCCCEEECCCEEEECCCCHHHHHHHHH
T ss_conf 1---7977779888376888988------644089999846-886612121112411366467888987
No 24
>KOG2108 consensus
Probab=99.74 E-value=1.1e-18 Score=146.93 Aligned_cols=85 Identities=25% Similarity=0.339 Sum_probs=61.5
Q ss_pred CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 12210253210775113468878775111126788759999530688631133220134554205766406787612675
Q gi|254780952|r 230 HEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRS 309 (685)
Q Consensus 230 ~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS 309 (685)
-.+|++|++||.||-+++-..++... .+ +..+.|||..||||+||||...++. ...+|+.....|+..||-
T Consensus 439 ~a~~d~Ii~D~~~d~t~c~~~li~i~--~~-----~~~~~~gd~~q~~~~f~~~~~al~~--~a~l~dt~~~~l~~s~r~ 509 (853)
T KOG2108 439 LAKFDYIILDEAQDCTPCIQNLILIQ--KH-----NIKVFVGDFHQSIYSFRGANSALFN--LATLPDTLVECLTKSFRF 509 (853)
T ss_pred CCCCCEEEEHHHHCCCHHHHHHHHHH--HC-----CCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHH
T ss_conf 33000344114305762777777653--33-----6101468537640102337788876--423526699986767766
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 14678752024443
Q gi|254780952|r 310 TTHILNTANKLISH 323 (685)
Q Consensus 310 ~~~Ii~~an~li~~ 323 (685)
.-.++...+.+.+.
T Consensus 510 ~~~v~~~~~~~lek 523 (853)
T KOG2108 510 GNEVAKVKETILEK 523 (853)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 67775412218888
No 25
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=99.71 E-value=1.6e-16 Score=132.23 Aligned_cols=68 Identities=29% Similarity=0.329 Sum_probs=48.8
Q ss_pred CHHHHHHHHCCCCCC-EEEEECCCCCHHHHHHHHHHHHHHC---CCCCH-HHEEEEEECHHHHHHHHHHHHHHC
Q ss_conf 988999985389896-6999588988358999999999980---89997-886762114799999999999851
Q gi|254780952|r 31 NAQQTHAVTIPDDTP-LLILAGAGTGKTTVLIARMLHLICH---KEIPP-SKILAMTFTNQAIQEMKNRLACYL 99 (685)
Q Consensus 31 n~~Q~~av~~~~~~~-~lV~AgaGsGKT~~L~~ri~~Ll~~---~~~~p-~~Il~iTFT~~AA~el~~Ri~~~l 99 (685)
+|+|.-|+..-..++ .+|++|||||||||.+.-+.=|+.. .| .| -+|.++.-|=|||.-|.+=|....
T Consensus 229 ~D~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G-~~~~~I~l~APTGKAa~RL~esl~~~~ 301 (753)
T TIGR01447 229 TDWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQG-KPRLRIALAAPTGKAAARLAESLRKAV 301 (753)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 3799999999860876899879889778999999999999898649-974047886684479999999999886
No 26
>KOG1805 consensus
Probab=99.70 E-value=1.4e-16 Score=132.48 Aligned_cols=221 Identities=24% Similarity=0.316 Sum_probs=129.3
Q ss_pred CCCCCHHH-HHHCCCHHHHHHHHC--CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHH
Q ss_conf 68321588-876299889999853--898966999588988358999999999980899978867621147999999999
Q gi|254780952|r 18 FVPSCVPN-YLKGLNAQQTHAVTI--PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNR 94 (685)
Q Consensus 18 ~~~~~~~~-~l~~Ln~~Q~~av~~--~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~R 94 (685)
..+..+.. .+..||..||+|+.- ..+...+|.+=||||||+|++.-|.-|+.. | ++||..+||+.|.+++.-+
T Consensus 657 ~~~p~~~~~~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~-g---kkVLLtsyThsAVDNILiK 732 (1100)
T KOG1805 657 VLIPKIKKIILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL-G---KKVLLTSYTHSAVDNILIK 732 (1100)
T ss_pred CCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHEEECCCCCCCHHHHHHHHHHHHHC-C---CEEEEEEHHHHHHHHHHHH
T ss_conf 46702567887531889999999987303322032699898122599999999973-8---8189985056788999998
Q ss_pred HHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99851645878961789999999984998487989807289999999999999739985478989999998667541589
Q gi|254780952|r 95 LACYLGEKIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWN 174 (685)
Q Consensus 95 i~~~l~~~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~ 174 (685)
+... +-..+++|--|.. +..++++.. .+
T Consensus 733 L~~~-~i~~lRLG~~~ki------------------------------h~~v~e~~~-~~-------------------- 760 (1100)
T KOG1805 733 LKGF-GIYILRLGSEEKI------------------------------HPDVEEFTL-TN-------------------- 760 (1100)
T ss_pred HHCC-CCCEEECCCCCCC------------------------------CHHHHHHHC-CC--------------------
T ss_conf 7506-7110344872224------------------------------468998712-34--------------------
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64612114653899999999975577775300111000124543012068897401221025321077511346887877
Q gi|254780952|r 175 PKDIPQSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRL 254 (685)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~ 254 (685)
..+. .-|+.|+..+.+..++ .-+..-..+|=+ .+.+|+|.+|||+--+. |--.|.-
T Consensus 761 -------~~s~------ks~~~l~~~~~~~~IV------a~TClgi~~plf---~~R~FD~cIiDEASQI~--lP~~LgP 816 (1100)
T KOG1805 761 -------ETSE------KSYADLKKFLDQTSIV------ACTCLGINHPLF---VNRQFDYCIIDEASQIL--LPLCLGP 816 (1100)
T ss_pred -------CCCH------HHHHHHHHHHCCCCEE------EEECCCCCCHHH---HCCCCCEEEECCCCCCC--CCHHHHH
T ss_conf -------4545------3399999972897679------997157886555---21426789986511114--3421210
Q ss_pred HHCCCCCCCCCEEEEEECHHH-------HHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 511112678875999953068-------86311332201345542057664067876126751467875202444343
Q gi|254780952|r 255 LCQKEDSKQGARICCVGDENQ-------CIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNK 325 (685)
Q Consensus 255 L~~~~~~~~~~~l~vVGD~dQ-------sIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~ 325 (685)
|. ......+|||..| +=-+=+|++-..|.+|.+.+|.+ +..|+.-||-...|..++|.||-.|.
T Consensus 817 L~------~s~kFVLVGDh~QLpPLV~s~ear~~Gl~~SLFkrL~e~hpea-V~~Lt~QYRMn~~I~~LSN~L~Yg~~ 887 (1100)
T KOG1805 817 LS------FSNKFVLVGDHYQLPPLVRSSEARQEGLSESLFKRLSEKHPEA-VSSLTLQYRMNREIMRLSNKLIYGNR 887 (1100)
T ss_pred HH------HCCEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCHH-HHHHHHHHHHCCHHHHHHHHHEECCE
T ss_conf 21------1235899646333786303645555673459999986509417-77688887632168764056368876
No 27
>pfam04257 Exonuc_V_gamma Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyses ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.
Probab=99.54 E-value=3.8e-12 Score=102.08 Aligned_cols=312 Identities=15% Similarity=0.205 Sum_probs=178.1
Q ss_pred CCCCCEEEEECCCCCHHCCCCCHHHHHHHHH--CCCCCHHHHEECC-CHHHHHHHHHHH----CCCCCEEEECCCCCC-C
Q ss_conf 5567448873155310000000013666531--1365303111010-014788998752----023320320331000-1
Q gi|254780952|r 339 HDDAKVSIHVSQSDNSELSTIIQEIINIQNT--GMSLNNIAILVRT-SWQTRKFEDAFL----EQEIPHKVIGGSFYD-R 410 (685)
Q Consensus 339 ~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~--g~~~~diAVL~Rt-n~~~~~l~~~L~----~~gIP~~~~g~~~f~-~ 410 (685)
..+..+.++.|.+..-|.+-+-+.|..+.++ ...|+||.|++.. +..+.-|...|. ...|||.+.+.+..+ .
T Consensus 331 ~~D~Si~ih~chs~~REvEvL~d~LL~~l~~dp~L~P~DIlVm~Pdie~YaP~I~aVF~~~~~~~~iP~~iaD~~~~~~~ 410 (1008)
T pfam04257 331 PADRSLQIHSCHSPLREVEVLHDQLLALLAADPTLQPRDILVMTPDIETYAPYIEAVFGRAPDGRRIPYSIADRSARQEN 410 (1008)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCC
T ss_conf 89980799858987999999999999998509999842278887976887999999948998888477588275512131
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHCCCCC----CCCCCHHHHHHHHHHHHHCCC--------------------CHHHHH
Q ss_conf 12102899999884663024575304687----546502466888878877398--------------------468999
Q gi|254780952|r 411 QEIRDALAYFRLVCQEHRDEDFKRIINCP----KRGIGKESLHKIQYHASQHHI--------------------SLLQAS 466 (685)
Q Consensus 411 ~eV~~lla~Lr~i~~p~d~~a~~~il~~p----~~gi~~~~l~~l~~~a~~~~~--------------------~~~~~~ 466 (685)
+.+..++.+|.+.........+..++..| ++||+..++..+.....+.+. ++..++
T Consensus 411 pl~~~~~~LL~L~~sRf~~~evl~lL~~p~v~~rf~l~~~dl~~i~~wl~~agirWGlD~~~r~~~~~~~~~~~TW~~gL 490 (1008)
T pfam04257 411 PLLSAFLQLLNLPESRFTASELLDLLEVPAVRRRFGLDEDDLERLRQWLEEAGIRWGLDAEHRQALGLPGDEQNSWRFGL 490 (1008)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCHHHHH
T ss_conf 89999999984444478899999997497989875999899999999999659555577777874279864446499999
Q ss_pred HHHHCC-------------------CCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHCCCHHHHHCCCCHH
Q ss_conf 764104-------------------67997785433434333566653102-4660222333477709667885068845
Q gi|254780952|r 467 EKLIDS-------------------GQFRPQIRQSLQNFVKDIRRWNNCSK-KMDPAPIANMILEQSGYMAMWKNNKSSE 526 (685)
Q Consensus 467 ~~~~~~-------------------~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 526 (685)
..++-+ ..........+..|++.+..+..... ..++.+....+.... .+.+......+
T Consensus 491 ~RllLG~a~~~~~~~~~~i~P~~~v~~~~~~~lg~l~~~~~~L~~~~~~l~~~~~~~~W~~~l~~ll--~~~f~~~~~~~ 568 (1008)
T pfam04257 491 DRLLLGYAMPDENGIWGGILPYDDVEGLDAELLGKLAEFLDRLDKWRDRLSQPRTLEEWLERLRQLL--DDFFDPDEDDE 568 (1008)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HHHHCCCCCHH
T ss_conf 9998671027776554771234776862599999999999999999999728989999999999999--99856892029
Q ss_pred H-HHHHHHHHHHHHHHHHHC--C---CHHHHHHHHH--HHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCC
Q ss_conf 5-898884399999998302--6---8899999757--654221115458936999611345566983698468576684
Q gi|254780952|r 527 K-SQERLDNLRELLSIIEKH--E---TLEGFVLQAP--LRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLP 598 (685)
Q Consensus 527 ~-~~~~l~~l~~l~~~~~~~--~---sl~~fl~~~~--~~~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P 598 (685)
. .....+.+.++...+... + ++.-+...+. +........--.++|+++|+=---..=|.+|++.||++|.||
T Consensus 569 ~~~~~l~~~l~~~~~~~~~a~~~~~i~l~~v~~~l~~~l~~~~~~~~fl~G~Itfc~l~PmRsIPfkvVclLGmndg~fP 648 (1008)
T pfam04257 569 WELQLLRKALADLLEDAIAAGFDQPIPLEVVRDLLEERLSQQSGRQGFLTGGVTFCTLMPMRSIPFKVVCLLGMNDGDFP 648 (1008)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 99999999999999999856898865699999999998733355667677855771677667898014899679988798
Q ss_pred CHHC-------------CCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 2212-------------996787899999999985864116998313211257654333555688872331478
Q gi|254780952|r 599 HQLS-------------INEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYD 659 (685)
Q Consensus 599 ~~~~-------------~~~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El~~ 659 (685)
.... .|....+++|-||==|+--||++|||||... . .....+..||-.+.||.|
T Consensus 649 R~~~~~~fDLm~~~pr~GDrsrr~dDRylFLEaLlSAr~~LyiSyvG~----s---~~dn~~~~PS~lV~ELld 715 (1008)
T pfam04257 649 RQDQPPGFDLMAKHPRLGDRSRRDDDRYLFLEALLSAREHLYISYVGR----S---IRDNSERPPSVLVSELLD 715 (1008)
T ss_pred CCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECC----C---CCCCCCCCCCHHHHHHHH
T ss_conf 888899973223388888986457799999999984422089999243----5---889893798789999999
No 28
>PRK11069 recC exonuclease V subunit gamma; Provisional
Probab=99.53 E-value=4.7e-12 Score=101.50 Aligned_cols=309 Identities=13% Similarity=0.183 Sum_probs=175.1
Q ss_pred CCCCEEEEECCCCCHHCCCCCHHHHHHHHH--CCCCCHHHHEECC-CHHHHHHHHHHHCC----CCCEEEECCCCC-CCC
Q ss_conf 567448873155310000000013666531--1365303111010-01478899875202----332032033100-011
Q gi|254780952|r 340 DDAKVSIHVSQSDNSELSTIIQEIINIQNT--GMSLNNIAILVRT-SWQTRKFEDAFLEQ----EIPHKVIGGSFY-DRQ 411 (685)
Q Consensus 340 ~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~--g~~~~diAVL~Rt-n~~~~~l~~~L~~~----gIP~~~~g~~~f-~~~ 411 (685)
.+..+.++.|.+..-|.+-+-+.|..+.++ ...|+||.|++.. +..+.-|...|... -|||.+.+.+.. +.|
T Consensus 370 ~D~Si~ih~CHS~~REVEvLhD~LL~~~~~dp~L~PrDIlVM~PDI~~YaP~I~AVFg~~~~~r~IP~~IaDr~~~~~~p 449 (1122)
T PRK11069 370 DDRSLSFHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDSYSPFIQAVFGNAPGERYLPFAISDRRARQSHP 449 (1122)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHCCH
T ss_conf 99846998479859999999999999985299998311688769878876899998389987886986771755212169
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHCCCCC----CCCCCHHHHHHHHHHHHHCCC--------------------CHHHHHH
Q ss_conf 2102899999884663024575304687----546502466888878877398--------------------4689997
Q gi|254780952|r 412 EIRDALAYFRLVCQEHRDEDFKRIINCP----KRGIGKESLHKIQYHASQHHI--------------------SLLQASE 467 (685)
Q Consensus 412 eV~~lla~Lr~i~~p~d~~a~~~il~~p----~~gi~~~~l~~l~~~a~~~~~--------------------~~~~~~~ 467 (685)
.+..++.+|.+.........+..++..| ++||+..++..|.....+.++ ++.-.+.
T Consensus 450 l~~a~l~LL~L~~sRf~asevl~LL~~pav~~rF~l~~~dl~~l~~Wl~~aGiRWGlD~~~r~~~~lp~~~~nTW~~GL~ 529 (1122)
T PRK11069 450 VLQAFISLLSLPDSRFVAEDVLALLEVPALAARFDITEEGLRYLRQWVEESGIRWGLDDDNVRELELPATGQHTWRFGLT 529 (1122)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99999999846456778999999971968998849999999999999998197757787779863798534351999999
Q ss_pred HHHCC-------------------CCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHCCCHHHHHCCCCHHH
Q ss_conf 64104-------------------67997785433434333566653102-46602223334777096678850688455
Q gi|254780952|r 468 KLIDS-------------------GQFRPQIRQSLQNFVKDIRRWNNCSK-KMDPAPIANMILEQSGYMAMWKNNKSSEK 527 (685)
Q Consensus 468 ~~~~~-------------------~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 527 (685)
.++-+ ..........+..|++.+..|..... ..++.+....+... +.+.+......+.
T Consensus 530 RlLLGyam~~~~~~~~~ilP~~~~~g~~ael~G~L~~fl~~L~~~~~~l~~~~~~~~W~~~l~~l--l~~ff~~~~e~~~ 607 (1122)
T PRK11069 530 RMLLGYAMESAAGEWQSVLPYDESSGLIAELAGHLASLLMQLNIWRRGLAQPRPLEEWLPVCRQL--LDDFFLPDAETEA 607 (1122)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHHHCCCHHHHH
T ss_conf 99877023788776476577775565309898789999999999999975999999999999999--9998479841589
Q ss_pred HH-HHHHHHHHHHHHHH--HCC---CHHHHHHHHHHHHHHHHCC----CCCCCEEEEEECCCCCCCCCEEEECCCCCCCC
Q ss_conf 89-88843999999983--026---8899999757654221115----45893699961134556698369846857668
Q gi|254780952|r 528 SQ-ERLDNLRELLSIIE--KHE---TLEGFVLQAPLRENLGSFI----PDSNCIQIMTLHAAKGLEFDTVFISGWEQGLL 597 (685)
Q Consensus 528 ~~-~~l~~l~~l~~~~~--~~~---sl~~fl~~~~~~~~~~~~~----~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~ 597 (685)
.. ...+.+.++...+. .++ ++.-+...+ ...++... --.++|+++|+=-....=|++|++.||++|.|
T Consensus 608 ~l~~i~~~~~~l~~~~~~a~~~~~i~l~vv~~~L--~~~L~~~~~~~~Fl~G~VtFctl~PMRsIPfkvVcLLGmndg~f 685 (1122)
T PRK11069 608 ALTLIEQQWQALIEEGLDAQYGDAVPLSLLRDEL--AQRLDQERISQRFLAGPVNFCTLMPMRSIPFKVVCLLGMNDGVY 685 (1122)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH--HHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCC
T ss_conf 9999999999999999846888746599999999--99851656445657897588257645688712288968986779
Q ss_pred CCHH-------------CCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 4221-------------2996787899999999985864116998313211257654333555688872331478
Q gi|254780952|r 598 PHQL-------------SINEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYD 659 (685)
Q Consensus 598 P~~~-------------~~~~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El~~ 659 (685)
|... ..|....+++|-||==|+-=|+++|||||... . ...+.+..||--+.||.|
T Consensus 686 PR~~~~~~FDLma~~pr~GDRsrRddDRyLFLEaLLSAr~~LyiSyvGr----s---irdn~e~~PSvlV~ELld 753 (1122)
T PRK11069 686 PRTLPPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR----S---IQDNSERFPSVLVSELIE 753 (1122)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECC----C---CCCCCCCCCCHHHHHHHH
T ss_conf 9989999987344676689998326579999999995143179988131----3---688892898387999999
No 29
>KOG1802 consensus
Probab=99.40 E-value=4.1e-12 Score=101.87 Aligned_cols=305 Identities=18% Similarity=0.219 Sum_probs=161.4
Q ss_pred HCCCHHHHHHHHCCCCCCE-EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 6299889999853898966-999588988358999999999980899978867621147999999999998516458789
Q gi|254780952|r 28 KGLNAQQTHAVTIPDDTPL-LILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRI 106 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~~~~-lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i 106 (685)
-.||..|..||.+..+.|+ +|.+.||||||-|.+.-|-+|+.. ....|||..-+|-|.+.+.++|.+ .|-+..++
T Consensus 409 pkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~---~~~~VLvcApSNiAVDqLaeKIh~-tgLKVvRl 484 (935)
T KOG1802 409 PKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ---HAGPVLVCAPSNIAVDQLAEKIHK-TGLKVVRL 484 (935)
T ss_pred HHHCHHHHHHHHHHHCCCCEEEECCCCCCCEEHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHHHHH-CCCEEEEE
T ss_conf 12246789999999759851554699988331168999999985---289569981650028999999986-18547640
Q ss_pred ---------EEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf ---------61789999999984998487989807289999999999999739985478989999998667541589646
Q gi|254780952|r 107 ---------QTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKD 177 (685)
Q Consensus 107 ---------~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~ 177 (685)
++.|=+++. .. .++++.+|...+ -..|+++ .+
T Consensus 485 ~aksRE~~~S~vs~L~lh-----~~-------~~~~~~pELq~l------------------------~klkde~---ge 525 (935)
T KOG1802 485 CAKSREDIESDVSFLSLH-----EQ-------LRNMDKPELQKL------------------------LKLKDEG---GE 525 (935)
T ss_pred EHHHHHHCCCCCCHHHHH-----HH-------HHCCCCHHHHHH------------------------HHHHHHC---CC
T ss_conf 021044335886078899-----98-------852574889999------------------------8634212---54
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 12114653899999999975577775300111000124543012068897401221025321077511346887877511
Q gi|254780952|r 178 IPQSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQ 257 (685)
Q Consensus 178 ~~~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~ 257 (685)
+ +..++ .....+ ....+..++.-.|+|-.+.-..-+..+.. -+|+.|+|||.--.+..- .|+-+..+
T Consensus 526 l---S~sD~-~k~~~l-----k~~~e~ell~~AdVIccTcv~Agd~rl~~---~kfr~VLiDEaTQatEpe-~LiPlvlG 592 (935)
T KOG1802 526 L---SSSDE-KKYRKL-----KRAAEKELLNQADVICCTCVGAGDRRLSK---FKFRTVLIDEATQATEPE-CLIPLVLG 592 (935)
T ss_pred C---CCHHH-HHHHHH-----HHHHHHHHHHHCCEEEEECCCCCCHHHCC---CCCCEEEEECCCCCCCCC-HHHHHHHC
T ss_conf 3---30246-889999-----99999998742578999524555500000---114379971343357861-12334536
Q ss_pred CCCCCCCCEEEEEECHHHH---HHHCCCCC----CHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-----
Q ss_conf 1126788759999530688---63113322----01345542057664067876126751467875202444343-----
Q gi|254780952|r 258 KEDSKQGARICCVGDENQC---IYEWRGAQ----FSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNK----- 325 (685)
Q Consensus 258 ~~~~~~~~~l~vVGD~dQs---IY~fRGA~----~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~----- 325 (685)
..++..|||-.|- |.-=.-|. -.+|.++--. +.+-+.|..-||+.|.|-++.+.+|-.-.
T Consensus 593 ------~kq~VlVGDh~QLgpvi~~kK~a~Agl~qsLferli~l--g~~P~~L~vQYRmhP~lSefpsn~fY~G~LqnGV 664 (935)
T KOG1802 593 ------AKQLVLVGDHKQLGPVIMCKKAATAGLSQSLFERLISL--GIKPIRLQVQYRMHPALSEFPSNMFYEGELQNGV 664 (935)
T ss_pred ------CEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEEEECHHHHHCCHHHHCCCHHHCCC
T ss_conf ------31589951542137412008888867789999998860--6774388875100805653624542234010476
Q ss_pred ---HHCCHHHHHHCCCCCCCCEEEEECCC------------CCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHH
Q ss_conf ---20101222210235567448873155------------310000000013666531136530311101001478899
Q gi|254780952|r 326 ---QRFDKKLFTQRDCHDDAKVSIHVSQS------------DNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFE 390 (685)
Q Consensus 326 ---~r~~k~l~~~~~~~~~~~v~~~~~~~------------~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~ 390 (685)
.|......-.-+ ..+.+..++.+.. ...||..+...|..++.+|+.++.|.|+..-..|-.-|.
T Consensus 665 T~~~R~~~g~~~pwp-~p~~pl~fy~~~g~eeisasGtSf~Nr~Ea~~~ekii~~l~~~gv~~~qIGVITpYegQr~~i~ 743 (935)
T KOG1802 665 TEIERSPLGVDFPWP-QPDKPLFFYVCYGQEEISASGTSFLNRTEAANCEKIITKLLKSGVKPSQIGVITPYEGQRSYIV 743 (935)
T ss_pred CHHHHCCCCCCCCCC-CCCCCCCEEEECCCEEEECCCCCEECHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCHHHHHHH
T ss_conf 244316678877777-8898611477426001403665400278888799999999983998899234213401699999
Q ss_pred HHHHCCC
Q ss_conf 8752023
Q gi|254780952|r 391 DAFLEQE 397 (685)
Q Consensus 391 ~~L~~~g 397 (685)
.+|...|
T Consensus 744 ~ym~~~g 750 (935)
T KOG1802 744 NYMQTNG 750 (935)
T ss_pred HHHHHCC
T ss_conf 9987617
No 30
>COG1330 RecC Exonuclease V gamma subunit [DNA replication, recombination, and repair]
Probab=99.30 E-value=7.5e-10 Score=86.38 Aligned_cols=309 Identities=16% Similarity=0.217 Sum_probs=158.3
Q ss_pred CCCCCEEEEECCCCCHHCCCCCHHHHHHHHHC--CCCCHHHHEECC-CHHHHHHHHHHHC----CCCCEEEECCCCCCCC
Q ss_conf 55674488731553100000000136665311--365303111010-0147889987520----2332032033100011
Q gi|254780952|r 339 HDDAKVSIHVSQSDNSELSTIIQEIINIQNTG--MSLNNIAILVRT-SWQTRKFEDAFLE----QEIPHKVIGGSFYDRQ 411 (685)
Q Consensus 339 ~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g--~~~~diAVL~Rt-n~~~~~l~~~L~~----~gIP~~~~g~~~f~~~ 411 (685)
..+..+.++.|.+..-|.+-+-+++..+.+.+ .++.||+||+-. ++.+.-|...|.. .-|||.+...+.-++.
T Consensus 336 ~~D~Si~ih~chs~~REVevL~d~Ll~ll~~dp~L~PrdIvVm~~dId~Y~P~I~AvFg~~~~~~~lP~~lsD~~~~~~~ 415 (1078)
T COG1330 336 TSDRSIQIHVCHSPKREVEVLHDKLLALLEEDPTLQPRDIVVLVPDIDSYTPYIEAVFGQAPIERHLPYSLSDRSLSQTE 415 (1078)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHH
T ss_conf 68982799852883167999999999996359899961379983645661699999948887666265362354332002
Q ss_pred CCHHHHHHHHHHHCCCH---HHHHHHCCCCC----CCCCCHHHHHHHHHHHHHCCCC-------------------HHH-
Q ss_conf 21028999998846630---24575304687----5465024668888788773984-------------------689-
Q gi|254780952|r 412 EIRDALAYFRLVCQEHR---DEDFKRIINCP----KRGIGKESLHKIQYHASQHHIS-------------------LLQ- 464 (685)
Q Consensus 412 eV~~lla~Lr~i~~p~d---~~a~~~il~~p----~~gi~~~~l~~l~~~a~~~~~~-------------------~~~- 464 (685)
. .+.+++.++.-|.. ......++.-| ++|+++.++..|..+..+.+.. -|.
T Consensus 416 p--ll~~~~~Ll~l~~Srf~~~eiL~LL~~p~l~~rF~i~e~~L~~l~~wv~~~girWGld~~~~~~l~~pa~~~ntW~~ 493 (1078)
T COG1330 416 P--LLNAFLLLLDLPESRFSAEEVLDLLDVPPLAARFGITEEELLTLRHWVEESGIRWGLDSTHRRELGLPATGQNTWRF 493 (1078)
T ss_pred H--HHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 7--99999998516301276999999830777785528882068999999985287236574444331688300336999
Q ss_pred HHHHHHCCCCC-------------------CHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHCCCHHHHHCC-C
Q ss_conf 99764104679-------------------97785433434333566653102466-022233347770966788506-8
Q gi|254780952|r 465 ASEKLIDSGQF-------------------RPQIRQSLQNFVKDIRRWNNCSKKMD-PAPIANMILEQSGYMAMWKNN-K 523 (685)
Q Consensus 465 ~~~~~~~~~~~-------------------~~~~~~~l~~~~~~l~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~~~-~ 523 (685)
.++.++.+-.+ .......|..|++.+..|.....+.. +.+..+. +.. +.+.+-.. .
T Consensus 494 Gl~RmLlgyam~e~~~~wqg~l~~~~v~g~~~El~g~La~fl~~L~~~~~~l~q~~~~~~W~~~-l~~--Ll~~ff~~~~ 570 (1078)
T COG1330 494 GLERMLLGYAMDEDAGEWQGVLPYDEVGGLRAELAGKLAHFLERLSAWYRGLSQPAYLEEWREI-LSD--LLDDFFLSDT 570 (1078)
T ss_pred HHHHHHHHCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HHH--HHHHHHCCCC
T ss_conf 9999986044555201222567656100128999999999999999999986477849999999-999--9999816895
Q ss_pred CHHHHHHHHHH-HHHHHHHH--HHCC-C-HHHHHHHHHHHHHHHHCCC----CCCCEEEEEECCCCCCCCCEEEECCCCC
Q ss_conf 84558988843-99999998--3026-8-8999997576542211154----5893699961134556698369846857
Q gi|254780952|r 524 SSEKSQERLDN-LRELLSII--EKHE-T-LEGFVLQAPLRENLGSFIP----DSNCIQIMTLHAAKGLEFDTVFISGWEQ 594 (685)
Q Consensus 524 ~~~~~~~~l~~-l~~l~~~~--~~~~-s-l~~fl~~~~~~~~~~~~~~----~~d~V~i~TIH~SKGLEfd~V~i~gl~~ 594 (685)
..+.....+.+ +..+.+.. ..|. . -..++.+... ........ -.+.|++.|+=-.--..|.+|++.||++
T Consensus 571 ~~~~~l~~i~~~~~~~~~~~~~a~~~~~l~~~~l~~~~~-~~l~~~~~~~~fl~G~vnfctl~PmrsiPfkvVCllGmnd 649 (1078)
T COG1330 571 DEEAALTILEFKWVPFIADSLSANYLKELPLDVLRDILA-ALLLDESISQRFLAGSVNFCTLVPMRSIPFKVVCLLGMND 649 (1078)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCC
T ss_conf 067899999998889998655523342158999999998-7414788666501023204543003676747788704767
Q ss_pred CCCCCHHCCCH-------------HHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCH
Q ss_conf 66842212996-------------7878999999999858641169983132112576543335556888723314783
Q gi|254780952|r 595 GLLPHQLSINE-------------GNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYDP 660 (685)
Q Consensus 595 g~~P~~~~~~~-------------~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El~~~ 660 (685)
|.||.....+. ...+|+|=||-=|+-=|++.|||||... .....++..||.+|.||.|.
T Consensus 650 g~~Pr~~~~~~fdLm~~~~~~gDrsrrddDryLFLeaLisA~~~lyISYiGr-------si~d~~~r~PSvll~eLld~ 721 (1078)
T COG1330 650 GDFPRQNSPDGFDLMAKDPRKGDRSRRDDDRYLFLEALISAQEQLYISYIGR-------SIRDNSERPPSVLLNELLDY 721 (1078)
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECC-------CCCCCCCCCCCHHHHHHHHH
T ss_conf 8888656876325665353445422430489999999997556457888425-------55668878981889999998
No 31
>TIGR02774 rexB_recomb ATP-dependent nuclease subunit B; InterPro: IPR014141 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important. This entry represents RexB proteins as found in Streptococcus and Lactococcus..
Probab=99.23 E-value=3.2e-07 Score=68.36 Aligned_cols=566 Identities=16% Similarity=0.189 Sum_probs=270.4
Q ss_pred HHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHH-HHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 58999999999980899978867621147999999999-99851645878961789999999984998487989807289
Q gi|254780952|r 57 TTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNR-LACYLGEKIPRIQTFHSFCASILRKHGEVVGLPTDFAILDS 135 (685)
Q Consensus 57 T~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~R-i~~~l~~~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~ 135 (685)
|..|++....+...| .||--|.- |.=.=| ||| |-..|.+.+..-=||=-|++ +.+|-- ++-.+.=.-+|+
T Consensus 12 TeiL~~~A~~~a~~G----~RvFYIAP-NSLSFE-KER~VLe~L~~~ASF~ItvTRFaQ--mARYfv-ln~~~~K~~l~D 82 (1116)
T TIGR02774 12 TEILVNEAEEAAEAG----KRVFYIAP-NSLSFE-KERAVLELLPEKASFSITVTRFAQ--MARYFV-LNDLPAKKTLDD 82 (1116)
T ss_pred HHHHHHHHHHHHHCC----CEEEEECC-CCCCHH-HHHHHHHCCCCCCCEEEHHHHHHH--HHHHHH-CCCCCCCCCCCH
T ss_conf 899999999998629----90798658-887647-899986025544211100455786--667643-057898863532
Q ss_pred HHHHHHHHHHHHHCCCCCC------CCCHHHHHHHHHHH---HHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999997399854------78989999998667---54158964612114653899999999975577775300
Q gi|254780952|r 136 AESRTIIKQLLKDLQIDDK------DYDPHEVIEKIDYW---QNRGWNPKDIPQSSLTEDAEIPKAIYIQYVAYLQKTKS 206 (685)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~---k~~~~~~~~~~~~~~~~~~~~~~~iy~~Y~~~l~~~~~ 206 (685)
.---.+.-+++.++.-++- +-++..+-+.|+.+ ++..++.-|+.....+...+-...|+......|.+.+.
T Consensus 83 ~GLAmiFYr~L~~l~~~dL~vYG~Lk~d~~fI~QLveLYkEL~~s~LS~~dL~~L~~~~K~~DL~~If~~~~~~L~~~~y 162 (1116)
T TIGR02774 83 IGLAMIFYRALAQLEPGDLKVYGRLKQDAQFIQQLVELYKELQKSQLSILDLEELTSPEKREDLLAIFEVVEAVLEEGEY 162 (1116)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 66899999986117867562011130275689999999999865365244340478854699999999999998743233
Q ss_pred CCCCCCHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHH-H----------
Q ss_conf 11100012454301206889740122102532107751134688787751111267887599995306-8----------
Q gi|254780952|r 207 CDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDEN-Q---------- 275 (685)
Q Consensus 207 lDf~Dll~~a~~ll~~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~d-Q---------- 275 (685)
+-+--|....+..+...+-..+.+ -.|+||=|==-|.=--.+|++|.++ +..| |+|==- |
T Consensus 163 -~~~S~l~~f~e~v~~g~l~~~L~~--~vlvvDGFtRFSAEEe~lv~~L~~~-----g~ei-iIGaYaSqKAY~~~F~~G 233 (1116)
T TIGR02774 163 -EQQSKLASFIEAVKSGKLDSDLKN--TVLVVDGFTRFSAEEEALVSLLHEK-----GVEI-IIGAYASQKAYKSSFLEG 233 (1116)
T ss_pred -HHCCHHHHHHHHHHCCCCCHHCCC--EEEEEECCCCCHHHHHHHHHHHHCC-----CEEE-EECCCHHHHHHCCCCCCC
T ss_conf -211769999998742751020184--7889717877408899999997349-----7079-974622225331577667
Q ss_pred HHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHH
Q ss_conf 86311332201345542057664067876126751467875202444343201012222102355674488731553100
Q gi|254780952|r 276 CIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSE 355 (685)
Q Consensus 276 sIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~E 355 (685)
.||. |++.++.++.+.|. .+-.....||-|.+..-.++ ++++. .+-+.... ..-+..+...+.+|.|-+..+|
T Consensus 234 NlY~---A~v~FL~~LA~ky~-~~a~f~~s~~~~~~~f~~~S-~~lEa-~hDFS~~~-~~l~~~d~~~l~iW~c~~QKeE 306 (1116)
T TIGR02774 234 NLYQ---ASVEFLRDLAQKYQ-TKAEFISSKHESKDSFDKLS-KLLEA-KHDFSELA-LDLDDKDKDALTIWECLTQKEE 306 (1116)
T ss_pred CHHH---HHHHHHHHHHHHCC-CCCEECCCCCCCCHHHHHHH-HHHCC-CCCCCCCC-HHHHHHHHHCCCCCCCCCCHHH
T ss_conf 4234---21899987476528-87102143331432489998-75145-33632010-3402566413451001251378
Q ss_pred CCCCCHHHHHHHHHC--CCCCHHHHEECC-CHHHHHHHHHHHCCCCCEEEECCC--CCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 000000136665311--365303111010-014788998752023320320331--000112102899999884663024
Q gi|254780952|r 356 LSTIIQEIINIQNTG--MSLNNIAILVRT-SWQTRKFEDAFLEQEIPHKVIGGS--FYDRQEIRDALAYFRLVCQEHRDE 430 (685)
Q Consensus 356 a~~Ia~~I~~l~~~g--~~~~diAVL~Rt-n~~~~~l~~~L~~~gIP~~~~g~~--~f~~~eV~~lla~Lr~i~~p~d~~ 430 (685)
.+.||+.|++...+| +.|+||-||.-- .+.=-.|...+.+..|||. .|.+ -=-+|-|..+=|+.|+=--....+
T Consensus 307 vE~VAr~IRqkL~~gsd~rYKdilvLLGD~~SYqLql~~IF~~Y~IPfY-lGkaE~MA~HPL~~F~eSL~r~kRY~FR~E 385 (1116)
T TIGR02774 307 VEHVARSIRQKLYEGSDYRYKDILVLLGDVDSYQLQLGKIFDKYDIPFY-LGKAEPMAAHPLVQFIESLERIKRYRFRAE 385 (1116)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHEEEECCCHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 8999999988762489630110012128777875010002221368854-566560011624489999998641045078
Q ss_pred HHHHCCCCCCC-CCCHHHHHHHHHHHHH---CCCCHHHHHHHHHCCCCCC-------HHHHHHHH----HHHHHHHHHHH
Q ss_conf 57530468754-6502466888878877---3984689997641046799-------77854334----34333566653
Q gi|254780952|r 431 DFKRIINCPKR-GIGKESLHKIQYHASQ---HHISLLQASEKLIDSGQFR-------PQIRQSLQ----NFVKDIRRWNN 495 (685)
Q Consensus 431 a~~~il~~p~~-gi~~~~l~~l~~~a~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~l~----~~~~~l~~~~~ 495 (685)
...-+++.-.+ .++..+|..-..+..- .|..-+....-.-...++. ..-...|. .++.-|..+-.
T Consensus 386 DvLNLLktgLy~~~~~~DiD~Fe~Y~~YaDIkG~~~F~~~Ft~~~~~~F~ddGqalykydL~~LN~~R~~ll~PL~~Lf~ 465 (1116)
T TIGR02774 386 DVLNLLKTGLYGDFSDSDIDKFEQYIKYADIKGLKKFKKTFTVNSSKKFDDDGQALYKYDLDRLNELRQRLLAPLEELFK 465 (1116)
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89998752035557712002589988862478811115764002356768202367776477788999999887899998
Q ss_pred HCCCCCCHHHHH-H---HHHHCCCHHHHHCC------CCHHHHHHHHHH----HHHHHHHHHHC-CCHHHHHHHHHHHHH
Q ss_conf 102466022233-3---47770966788506------884558988843----99999998302-688999997576542
Q gi|254780952|r 496 CSKKMDPAPIAN-M---ILEQSGYMAMWKNN------KSSEKSQERLDN----LRELLSIIEKH-ETLEGFVLQAPLREN 560 (685)
Q Consensus 496 ~~~~~~~~~l~~-~---i~~~~~~~~~~~~~------~~~~~~~~~l~~----l~~l~~~~~~~-~sl~~fl~~~~~~~~ 560 (685)
. +......++. . .+...++.+-+... ...|+-.+.|.. |.+|..+..+- =++++||.-+.....
T Consensus 466 S-~kq~g~~ll~kk~~~FL~~~~l~~nl~~L~~~~s~~E~Ek~~EVWK~ftd~L~~f~~iFgqekl~L~dFLALL~sGM~ 544 (1116)
T TIGR02774 466 S-RKQLGEKLLNKKFLLFLKEIALAENLQKLATTKSEVEQEKEEEVWKTFTDILEQFATIFGQEKLKLDDFLALLKSGMK 544 (1116)
T ss_pred H-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 7-887788887546665520042068999875224565446653166789999999878753364349999999996331
Q ss_pred HHH---CCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHH-HHHHH------------------------
Q ss_conf 211---15458936999611345566983698468576684221299678-78999------------------------
Q gi|254780952|r 561 LGS---FIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGN-VEGER------------------------ 612 (685)
Q Consensus 561 ~~~---~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~-~eEEr------------------------ 612 (685)
... .+..-|.|+|-.--=..=+--|.||-+||..+.||...- +.+= -||||
T Consensus 545 ~s~YR~vPATvDvVtvksYdLv~Pht~~FVYAlGLTq~~fPki~~-n~SLltD~eR~~lN~rlaa~~~~ghfdi~~~EN~ 623 (1116)
T TIGR02774 545 ASQYRTVPATVDVVTVKSYDLVEPHTKPFVYALGLTQSNFPKISQ-NSSLLTDEERQALNDRLAATEEDGHFDIASQENL 623 (1116)
T ss_pred CCCCCCCCEEEEEEEEEECHHCCCCCCCCCEEECCCHHCCCCHHH-CCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCC
T ss_conf 146631011654787620120276655521222244102660341-3677787999976025400246751303333243
Q ss_pred -HHHHHHHH---HHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf -99999985---864116998313211257654333555688872331478
Q gi|254780952|r 613 -RLAYVGIT---RAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYD 659 (685)
Q Consensus 613 -RL~YVA~T---RAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El~~ 659 (685)
.-=|-|++ =|++.|+||.|.= -.-...+.|++|.||.+
T Consensus 624 KKNh~a~LSL~NsA~k~LvLS~p~l---------~NE~ed~~SpYL~eL~~ 665 (1116)
T TIGR02774 624 KKNHYAALSLFNSATKELVLSAPQL---------FNESEDKLSPYLQELID 665 (1116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HCCCCCCCCHHHHHHHH
T ss_conf 1568999999887655455202334---------14780003657899997
No 32
>KOG1807 consensus
Probab=99.06 E-value=4.1e-08 Score=74.43 Aligned_cols=79 Identities=25% Similarity=0.218 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHCCCC-CCEEEEECCCCCHHHHHHHHHHHHHHCC--CCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 299889999853898-9669995889883589999999999808--9997886762114799999999999851645878
Q gi|254780952|r 29 GLNAQQTHAVTIPDD-TPLLILAGAGTGKTTVLIARMLHLICHK--EIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPR 105 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~-~~~lV~AgaGsGKT~~L~~ri~~Ll~~~--~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~ 105 (685)
-|+..|+.|-+.... .--++.+.||||||.|=..-+.-||.+. -..|+-||++.|||.|.+.+-+|+...-++..++
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~qrpsImr 457 (1025)
T KOG1807 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYHQRPSIMR 457 (1025)
T ss_pred EECHHHHHHHHHHHHHHHHEEECCCCCCCEEEHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 50488999998776563211325998772203499999999626554555644664223578999999987338965898
Q ss_pred EE
Q ss_conf 96
Q gi|254780952|r 106 IQ 107 (685)
Q Consensus 106 i~ 107 (685)
+|
T Consensus 458 ~g 459 (1025)
T KOG1807 458 QG 459 (1025)
T ss_pred EC
T ss_conf 54
No 33
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=98.69 E-value=2.8e-07 Score=68.72 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=39.2
Q ss_pred HCCCHHHHHHHHCCCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEE
Q ss_conf 629988999985389896-69995889883589999999999808999788676
Q gi|254780952|r 28 KGLNAQQTHAVTIPDDTP-LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILA 80 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~~~-~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~ 80 (685)
+..|++|+.++.+-.+.+ +.+.++||||||..-+....+++.++. .++|++
T Consensus 3 ~P~~~~Q~~~~~~l~~~~iv~~~GpAGtGKT~la~~~al~~l~~~~--~~kiii 54 (205)
T pfam02562 3 KPKTLGQKRYVEAIRKNDIVFGIGPAGTGKTYLAVAAAVDALKDGK--VKRIIL 54 (205)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC--CCEEEE
T ss_conf 7898889999999717980799899986099999999999997189--437999
No 34
>COG3893 Inactivated superfamily I helicase [DNA replication, recombination, and repair]
Probab=98.59 E-value=7e-06 Score=59.14 Aligned_cols=300 Identities=15% Similarity=0.151 Sum_probs=145.9
Q ss_pred CEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHHHHHH
Q ss_conf 448873155310000000013666531136530311101001478899875202332032033-1000112102899999
Q gi|254780952|r 343 KVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAYFR 421 (685)
Q Consensus 343 ~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~lla~Lr 421 (685)
.+.++...++++|+..|+-..++..+.+ +.-|.+.-.+..++.+...|.+-||+..-.+| .+-..+..-.++-+++
T Consensus 305 ~~~lieaa~e~dea~aiA~alr~aLe~~---~~aALVt~Dr~lARRV~~~L~R~gv~adds~G~pLs~t~~aal~~~~ie 381 (697)
T COG3893 305 FVTLIEAANERDEAYAIALALREALEAP---RTAALVTPDRNLARRVATELARFGVEADDSAGTPLSATPQAALLMLLIE 381 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 5469886531346799999999998483---3000016743789999999987087766556875432277799999999
Q ss_pred HHHCCCHHHHHHHCCCCCCCCCCHHHH-----HHHHHHHHHCC---CCHHHHHHHHHC-------CCCCCHHHHHHH---
Q ss_conf 884663024575304687546502466-----88887887739---846899976410-------467997785433---
Q gi|254780952|r 422 LVCQEHRDEDFKRIINCPKRGIGKESL-----HKIQYHASQHH---ISLLQASEKLID-------SGQFRPQIRQSL--- 483 (685)
Q Consensus 422 ~i~~p~d~~a~~~il~~p~~gi~~~~l-----~~l~~~a~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~l--- 483 (685)
.+..|.|..++..++..|....|-.-. ..+.+.+..++ -+.+..+..+.+ .....+.....+
T Consensus 382 ~v~rpgDPv~Ll~llKhPl~~fg~e~~~~~~aa~~LEl~alrg~~~s~~~~~L~~lle~rl~~~~d~~~~p~~~~~~~~~ 461 (697)
T COG3893 382 AVLRPGDPVALLALLKHPLARFGLEFLDLRDAANVLELAALRGGKVSPGYGELPALLEARLLGTSDDDLPPAWRAGLDPD 461 (697)
T ss_pred HHHCCCCHHHHHHHHHCCHHHCCCCHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCC
T ss_conf 98079976989999709412047712321075777889986078888316679999999851246666785202036942
Q ss_pred -----HHHHHHHHHHHHHCCCCC---CHHHHHH-----------HHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----434333566653102466---0222333-----------477709667885068845589888439999999830
Q gi|254780952|r 484 -----QNFVKDIRRWNNCSKKMD---PAPIANM-----------ILEQSGYMAMWKNNKSSEKSQERLDNLRELLSIIEK 544 (685)
Q Consensus 484 -----~~~~~~l~~~~~~~~~~~---~~~l~~~-----------i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~ 544 (685)
+.+...+..-..-..... ...+... ..++.|+...+... +.+...-..+..++..-..
T Consensus 462 ~i~lA~~L~~~i~~A~~pl~~~~~~~~~~l~~~a~~t~~ale~l~~dd~g~l~~lw~~---eage~L~~l~~gl~~~~a~ 538 (697)
T COG3893 462 NIALARLLLQRISEAKAPLGAGHFEAIADLLALALDTVRALENLAIDDEGYLLALWLG---EAGEKLAALLRGLIEAGAQ 538 (697)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHCCCC
T ss_conf 4799999999988643563232277776399999999999986256621039999875---0557999999999861465
Q ss_pred CCCHHHH--HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCH---HH------H-HHHH
Q ss_conf 2688999--997576542211154589369996113455669836984685766842212996---78------7-8999
Q gi|254780952|r 545 HETLEGF--VLQAPLRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINE---GN------V-EGER 612 (685)
Q Consensus 545 ~~sl~~f--l~~~~~~~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~---~~------~-eEEr 612 (685)
....+.+ +..+...+-..........|.||-.-.|.|+-||.|+|.||+||.+|++...+- .. + .=||
T Consensus 539 ls~~ew~diLd~L~~ge~vkp~~~~hprv~I~gaLEaRl~~~D~VVi~glNEg~wP~~~~nd~FlSr~mr~~lgL~pper 618 (697)
T COG3893 539 LSAPEWPDILDALVAGETVKPAPGTHPRVRIMGALEARLQRFDGVVIVGLNEGVWPSKTPNDLFLSRPMRKSLGLPPPER 618 (697)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHCHHHHHHCCCCCHHH
T ss_conf 67305789999861776236788888716883104665600352899557756488999651233458897459989678
Q ss_pred HH-----HHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf 99-----9999858641169983132112576543335556888723314
Q gi|254780952|r 613 RL-----AYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLEL 657 (685)
Q Consensus 613 RL-----~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El 657 (685)
|. -|-.|---..+++||++.... ..|+.+||.|.-+
T Consensus 619 R~glqAhd~fqma~na~eVvLt~~~r~g---------~ap~v~SrwLeRL 659 (697)
T COG3893 619 RIGLQAHDYFQMAKNAPEVVLTRSERSG---------EAPAVSSRWLERL 659 (697)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEHHCCC---------CCCCHHHHHHHHH
T ss_conf 7546664899996599817986320158---------9860456899999
No 35
>PRK10536 hypothetical protein; Provisional
Probab=98.44 E-value=1.9e-06 Score=63.02 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=38.8
Q ss_pred HHCCCHHHHHHHHCCCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEE
Q ss_conf 7629988999985389896-69995889883589999999999808999788676
Q gi|254780952|r 27 LKGLNAQQTHAVTIPDDTP-LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILA 80 (685)
Q Consensus 27 l~~Ln~~Q~~av~~~~~~~-~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~ 80 (685)
+..-|+.|++.+.+-.+.. +.++++||||||+.-+...+.++.++.+ ++|++
T Consensus 57 i~pkt~~Q~~yi~~i~~~~ivf~~GpAGTGKT~lA~a~Al~~l~~~~~--~kIIl 109 (262)
T PRK10536 57 ILARNEAQLHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDV--DRIIV 109 (262)
T ss_pred CCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC--CEEEE
T ss_conf 678986499999998619839998999875899999999999985888--68999
No 36
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=98.35 E-value=9.7e-08 Score=71.88 Aligned_cols=63 Identities=25% Similarity=0.306 Sum_probs=45.5
Q ss_pred CHHHHHHHHCCCCCC-EEEEECCCCCHHHHHHHHHHHHHHC------CCCCHHHEEEEEECHHHHHHHHH
Q ss_conf 988999985389896-6999588988358999999999980------89997886762114799999999
Q gi|254780952|r 31 NAQQTHAVTIPDDTP-LLILAGAGTGKTTVLIARMLHLICH------KEIPPSKILAMTFTNQAIQEMKN 93 (685)
Q Consensus 31 n~~Q~~av~~~~~~~-~lV~AgaGsGKT~~L~~ri~~Ll~~------~~~~p~~Il~iTFT~~AA~el~~ 93 (685)
+++|..|.......+ .++..|||+|||++++.-+..++.. ......+|..+..|.+++.++.+
T Consensus 203 ~~~r~~a~~~~~~~~~~~~~~G~~t~~~~~i~kl~~~l~~~~~~~~~~~~~~~~i~l~~~~~k~~~~~~e 272 (696)
T COG0507 203 SPERIRAAALALLEEFSLISGGPGTGKTTTIAKLLLKLLEQPEIEVLKSGLAQRISLLAPTGKAALRLTE 272 (696)
T ss_pred CHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHCCCHHHHHHHCC
T ss_conf 8587777888764376552578845567999999999855404443320111567763401488886311
No 37
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.16 E-value=1.1e-05 Score=57.66 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=28.3
Q ss_pred EEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECC
Q ss_conf 96113455669836984685766842212996787899999999985864116998313
Q gi|254780952|r 574 MTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLFYTI 632 (685)
Q Consensus 574 ~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~~~~ 632 (685)
+|||||-|.--|.++|..- |+ + .|.+.||||||-++.+.|+|..
T Consensus 660 ~TIHKSQG~TVDra~VLat-----~~---m-------drhltYVAMTRHRe~~~ly~~~ 703 (992)
T PRK13889 660 ATIHKAQGMTVDRTHVLAT-----PG---M-------DAHGSYVALSRHRDGVDLHYGR 703 (992)
T ss_pred HHHHHHCCCCCCEEEEECC-----CC---C-------CHHHHHHHHCCCCCCCHHEECH
T ss_conf 6657633864014899367-----88---5-------3555242310242211110013
No 38
>TIGR00376 TIGR00376 DNA helicase, putative; InterPro: IPR004483 Eukaryotic members of this family have been characterised as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterised as helicases.; GO: 0003677 DNA binding, 0005524 ATP binding.
Probab=98.15 E-value=0.00088 Score=44.70 Aligned_cols=78 Identities=29% Similarity=0.391 Sum_probs=59.3
Q ss_pred HCCCHHHHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 62998899998538989--66999588988358999999999980899978867621147999999999998516-4587
Q gi|254780952|r 28 KGLNAQQTHAVTIPDDT--PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG-EKIP 104 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~~--~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~-~~~~ 104 (685)
..||+.|+.++...... -.++.+.||+|||++++.-+..++.. + ..+++++..-++.|+..+.+++..... ....
T Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~gp~g~g~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~d~~~~~~~~~~p~~~~~ 278 (709)
T TIGR00376 201 PNLNESQKEAVGFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-G-PEERVLVTAPSNIAVDNLLERLAPLYPDLKLL 278 (709)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC-C-CCCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 232234677765431234416872677776215689999999852-8-53306762353103778888876414541022
Q ss_pred EEE
Q ss_conf 896
Q gi|254780952|r 105 RIQ 107 (685)
Q Consensus 105 ~i~ 107 (685)
+++
T Consensus 279 ~~g 281 (709)
T TIGR00376 279 RLG 281 (709)
T ss_pred ECC
T ss_conf 226
No 39
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=98.06 E-value=2.5e-05 Score=55.30 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=57.0
Q ss_pred HCCCHHHHHHHHCCCC--CCEEEEECCCCCHHHHHHH-HHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 6299889999853898--9669995889883589999-999999808999788676211479999999999985164587
Q gi|254780952|r 28 KGLNAQQTHAVTIPDD--TPLLILAGAGTGKTTVLIA-RMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIP 104 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~--~~~lV~AgaGsGKT~~L~~-ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~ 104 (685)
..|++||+.||.+-.+ +-..|++-||+|||++|.. |.++ +..| .+|+....+-|||.+|.+ ....
T Consensus 380 ~~Ls~EQ~~Av~hiT~~~~Ia~VvG~AGaGKStmL~aAReaw--Ea~G---yrV~GaALsGkAAegLe~-------~sGI 447 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGAERIAAVIGRAGAGKTTMMKAAREAW--EAAG---YRVVGGALAGKAAEGLEK-------EAGI 447 (1102)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH--HHCC---CEEEEECCCHHHHHHHHH-------CCCC
T ss_conf 138999999999853788668998428887889999999999--9779---779801500789997753-------4695
Q ss_pred EEEEHHHHHHHH
Q ss_conf 896178999999
Q gi|254780952|r 105 RIQTFHSFCASI 116 (685)
Q Consensus 105 ~i~T~Hsf~~~i 116 (685)
...|+|||-++.
T Consensus 448 ~SrTlAs~e~~w 459 (1102)
T PRK13826 448 ASRTLSSWELRW 459 (1102)
T ss_pred CCHHHHHHHHHH
T ss_conf 303389999874
No 40
>TIGR02786 addB_alphas double-strand break repair protein AddB; InterPro: IPR014153 AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage . More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of alphaproteobacterial types..
Probab=98.04 E-value=7.6e-05 Score=52.02 Aligned_cols=104 Identities=11% Similarity=0.055 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHHHH
Q ss_conf 67448873155310000000013666531136530311101001478899875202332032033-10001121028999
Q gi|254780952|r 341 DAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAY 419 (685)
Q Consensus 341 ~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~lla~ 419 (685)
-..+.++...++++||..||=.+++.+++..+ +.-|-++--+.-++.+..+|.+-||-.--.|| .+-+++.-..+.-+
T Consensus 367 ~~~~s~iEA~~~reEA~AIAlaLR~A~ed~~~-~tAALVTPDR~LARRV~a~L~RFGi~aDDSaG~pL~~tp~a~llrl~ 445 (1096)
T TIGR02786 367 FANLSLIEAANEREEALAIALALREAVEDPGK-KTAALVTPDRALARRVAAELKRFGIEADDSAGRPLSQTPAAVLLRLL 445 (1096)
T ss_pred CCCCEEECCCCHHHHHHHHHHHHHHHHHHCCC-CCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 24650304788746999999999998722489-83121130155899999876534866577677423331178999999
Q ss_pred HHHHHCCCHHHHHHHCCCCCCCCCCH
Q ss_conf 99884663024575304687546502
Q gi|254780952|r 420 FRLVCQEHRDEDFKRIINCPKRGIGK 445 (685)
Q Consensus 420 Lr~i~~p~d~~a~~~il~~p~~gi~~ 445 (685)
++++.+|-|..+|..++.=|.+.+|.
T Consensus 446 ~~~~~~pldPv~LLs~lKHPL~~lG~ 471 (1096)
T TIGR02786 446 AEAVFAPLDPVALLSLLKHPLVRLGE 471 (1096)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99986678805699986305653378
No 41
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.71 E-value=0.00012 Score=50.75 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHCCC---CCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCCHHHEEEEEECHHHHHHHH
Q ss_conf 6832158887629988999985389---8966999588988358999999999980--8999788676211479999999
Q gi|254780952|r 18 FVPSCVPNYLKGLNAQQTHAVTIPD---DTPLLILAGAGTGKTTVLIARMLHLICH--KEIPPSKILAMTFTNQAIQEMK 92 (685)
Q Consensus 18 ~~~~~~~~~l~~Ln~~Q~~av~~~~---~~~~lV~AgaGsGKT~~L~~ri~~Ll~~--~~~~p~~Il~iTFT~~AA~el~ 92 (685)
+++..-+.+|.+||+.|++|+..-. +.=+.|.+-||+|||+-|-. +.-+|.. ....| +|+.|--|.+|..||+
T Consensus 957 L~~~v~~s~l~~LT~GQK~At~LIltT~DRFvaIQGyAGVGKTTql~a-vi~ai~tl~~~~rp-qViGLAPTH~AV~EL~ 1034 (1756)
T PRK13709 957 LMERVPGELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRA-VMSAVNMLPESERP-RVVGLGPTHRAVGEMR 1034 (1756)
T ss_pred CHHHCCHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH-HHHHHHHCCCCCCC-CEEEECCHHHHHHHHH
T ss_conf 023275566635785778777563247872599870355666778999-99999725513587-2675675178999999
Q ss_pred HHHHHHCCCCCCEEEEHHHHHHH
Q ss_conf 99998516458789617899999
Q gi|254780952|r 93 NRLACYLGEKIPRIQTFHSFCAS 115 (685)
Q Consensus 93 ~Ri~~~l~~~~~~i~T~Hsf~~~ 115 (685)
+ ..+.-.|+-||-..
T Consensus 1035 ~--------~GV~AQTlaSfL~d 1049 (1756)
T PRK13709 1035 S--------AGVDAQTLASFLHD 1049 (1756)
T ss_pred H--------CCCCHHHHHHHHHH
T ss_conf 6--------49607899999862
No 42
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.60 E-value=0.00042 Score=46.89 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=61.3
Q ss_pred HCCCHHHHHHHHCC----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCC
Q ss_conf 62998899998538----98966999588988358999999999980899978867621147999999999998516458
Q gi|254780952|r 28 KGLNAQQTHAVTIP----DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKI 103 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~----~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~ 103 (685)
..||++|..|+..- ...+.|+-+.+|||||.+..+-|...+..+ +++|++.-.-+-+..|.+|+..++|.
T Consensus 167 ~~L~~eQ~~a~~~i~~~~~~~~~LL~GvTGSGKTevYl~li~~~l~~G----kqvLiLvPEI~lt~q~~~rl~~~fg~-- 240 (699)
T PRK05580 167 PTLNEEQAAALAAIRAAGGFSAFLLDGVTGSGKTEVYLQAIAEALAQG----KQALVLVPEIALTPQLLARFRARFGA-- 240 (699)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC----CCEEEEECCHHHHHHHHHHHHHHHCC--
T ss_conf 788999999999998558887178747898607999999999999739----97899917678789999999987099--
Q ss_pred CEEEEHHHH
Q ss_conf 789617899
Q gi|254780952|r 104 PRIQTFHSF 112 (685)
Q Consensus 104 ~~i~T~Hsf 112 (685)
.|..+||-
T Consensus 241 -~v~v~HS~ 248 (699)
T PRK05580 241 -RVAVLHSG 248 (699)
T ss_pred -CEEEECCC
T ss_conf -57996488
No 43
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=97.56 E-value=0.00028 Score=48.15 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=52.0
Q ss_pred CHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 988999985389-89669995889883589999999999808999788676211479999999999985164587896
Q gi|254780952|r 31 NAQQTHAVTIPD-DTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQ 107 (685)
Q Consensus 31 n~~Q~~av~~~~-~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~ 107 (685)
++-|++|+..-. +..++|.|+.|||||.+..--+.+.+.... ...+++.+.-|++-+.++.+++.+.......+++
T Consensus 1 ~~~Q~~~i~~~~~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~-~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~ 77 (167)
T pfam00270 1 TPIQAEAIPAILEGKDVLVQAPTGSGKTLAFLLPALQALLKNP-DGPQALVLAPTRELAEQIYEELKKLGKYLGLKVA 77 (167)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9459999999976997899889997589999999999987477-8987999906088888999886432102676404
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=97.55 E-value=0.00038 Score=47.22 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=57.6
Q ss_pred CCCCCHHHHH----HCCCHHHHHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCH-H--HEEEEEECHHHH
Q ss_conf 6832158887----629988999985-38989669995889883589999999999808-9997-8--867621147999
Q gi|254780952|r 18 FVPSCVPNYL----KGLNAQQTHAVT-IPDDTPLLILAGAGTGKTTVLIARMLHLICHK-EIPP-S--KILAMTFTNQAI 88 (685)
Q Consensus 18 ~~~~~~~~~l----~~Ln~~Q~~av~-~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~-~~~p-~--~Il~iTFT~~AA 88 (685)
.+|..+-.|+ ..+|+-|++|+. ...+.++||+|+-|||||.+-.-=+...|... +.+| . .+|.||-=++-+
T Consensus 7 ~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 7 ILDPRVREWFKRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred HCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHH
T ss_conf 34899999999850899878999999985898469986899973799999999999860688888856999957078887
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999998516
Q gi|254780952|r 89 QEMKNRLACYLG 100 (685)
Q Consensus 89 ~el~~Ri~~~l~ 100 (685)
++|..|+...+.
T Consensus 87 ~Di~~rL~~~~~ 98 (814)
T COG1201 87 NDIRRRLEEPLR 98 (814)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999999
No 45
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.50 E-value=0.00039 Score=47.12 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=55.4
Q ss_pred HCCCHHHHHHHHCCCC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 6299889999853898--96699958898835899999999998089997886762114799999999999851645
Q gi|254780952|r 28 KGLNAQQTHAVTIPDD--TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEK 102 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~--~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~ 102 (685)
..+++-|++++..-.+ ..++|.|.+|||||.++..-+.+++... ...++++++-|+..+.++.+++.+..+..
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~tGsGKT~~~~~~~~~~~~~~--~~~~~li~~P~~~l~~q~~~~~~~~~~~~ 81 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG--KGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC--CCCEEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 9999889999999983899889989999609999999999986338--99759999085999999998860102102
No 46
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=97.46 E-value=0.00039 Score=47.13 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=34.2
Q ss_pred EEEECHHHHHHHCCCCCCHHHHHHHCCCCC-CEEEEEEECCCC--CHHHHHHHHHHHHH
Q ss_conf 999530688631133220134554205766-406787612675--14678752024443
Q gi|254780952|r 268 CCVGDENQCIYEWRGAQFSHILNFQKDFKD-ANIIKLEQNYRS--TTHILNTANKLISH 323 (685)
Q Consensus 268 ~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~-~~~i~L~~NyRS--~~~Ii~~an~li~~ 323 (685)
.++=|+.|.|..=--...+.|..+.+.++- ...+.|+..||| +...+++.+.++..
T Consensus 118 V~~~D~~Q~i~~~e~g~~~~l~~~~~~~~~~~~~~~L~~qfR~~~s~~~~~wv~~lL~~ 176 (348)
T pfam09848 118 VFFIDEGQEINTGEIGTIEELKKIAAKWPAEIYELHLSSQFRSGGSDDYLAWVDALLDN 176 (348)
T ss_pred EEEECCCCEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 99987984881113768999999998689704798655010457867999999998547
No 47
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.00013 Score=50.50 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=48.1
Q ss_pred CEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHH---HH----HCCCCCCHHHHHHHCCCCCCEEEEEE
Q ss_conf 210253210775113468878775111126788759999530688---63----11332201345542057664067876
Q gi|254780952|r 232 KIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQC---IY----EWRGAQFSHILNFQKDFKDANIIKLE 304 (685)
Q Consensus 232 r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQs---IY----~fRGA~~~~~~~f~~~f~~~~~i~L~ 304 (685)
.|++++|||.= |..+-..+..- .. ...+++|||++|- +. +-++-....|..+...++ -....|.
T Consensus 488 ~fd~viiDEAs-----Q~~~~~~~~~l--~~-~~~~il~GD~kQL~p~~~~~~~~~~~~~~slf~~~~~~~~-~~~~~L~ 558 (767)
T COG1112 488 EFDYVIIDEAS-----QATEPSALIAL--SR-AKKVILVGDHKQLPPTVFFKESSPEGLSASLFERLIDNGP-EVVYLLR 558 (767)
T ss_pred CCCEEEEECCC-----HHCCHHHHHHH--HH-HCEEEEECCHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCC-CHHHHHH
T ss_conf 57789994411-----01112333235--34-2558991463107872002112630122678999974043-1336778
Q ss_pred ECCCCCHHHHHHHHHHHHH
Q ss_conf 1267514678752024443
Q gi|254780952|r 305 QNYRSTTHILNTANKLISH 323 (685)
Q Consensus 305 ~NyRS~~~Ii~~an~li~~ 323 (685)
..||..+.|..+.|..+-.
T Consensus 559 ~qYRm~~~i~~f~s~~fY~ 577 (767)
T COG1112 559 VQYRMHPDIIAFSSKVFYN 577 (767)
T ss_pred HHHCCCHHHHHCCHHCEEC
T ss_conf 7617788898331322557
No 48
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=97.35 E-value=0.0011 Score=44.04 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHH
Q ss_conf 2998899998538-989669995889883589999999999808999788676211479999999999
Q gi|254780952|r 29 GLNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRL 95 (685)
Q Consensus 29 ~Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri 95 (685)
.|.+-|.+|+... ..+..+|.++.|||||.+.+.-+.++... ..++|++.-|+.=...+.+++
T Consensus 3 ~LR~yQ~~a~~~~~~~~~~~i~~pTGsGKT~~~~~~i~~~~~~----~~~~lvlvp~~~L~~Q~~~~~ 66 (103)
T pfam04851 3 ELRPYQIEAIRNLLEKKRGLIVMATGSGKTLTAAKLIARLLKG----KKKVLFLVPRKDLLEQALEEF 66 (103)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHHH
T ss_conf 8729999999999963986999589998799999999999846----992999908299999999965
No 49
>PRK02362 ski2-like helicase; Provisional
Probab=97.31 E-value=0.0033 Score=40.77 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=57.0
Q ss_pred CCCCHHHHHH-----CCCHHHHHHHHC--CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHH
Q ss_conf 8321588876-----299889999853--898966999588988358999999999980899978867621147999999
Q gi|254780952|r 19 VPSCVPNYLK-----GLNAQQTHAVTI--PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEM 91 (685)
Q Consensus 19 ~~~~~~~~l~-----~Ln~~Q~~av~~--~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el 91 (685)
+|..+.++++ .|+|-|.+|+.. ..+.+++|.|+-|||||.+.---+.+.+.++ .+++.++-.++=|+|-
T Consensus 8 LP~~~~~~~~~~gI~~Lyp~Q~eal~~gl~~g~NlvvsaPTgsGKTlvAElail~~l~~g----~k~vYi~P~kALa~EK 83 (736)
T PRK02362 8 LPDGVIDFYEGSGIEELYPPQAEAVEAGLLEGKNLLAAIPTASGKTLLAELAMLKAIAEG----GKALYIVPLRALASEK 83 (736)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC----CEEEEECCHHHHHHHH
T ss_conf 998999999976997578999999986435698189979999858999999999999839----9799985879999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780952|r 92 KNRLAC 97 (685)
Q Consensus 92 ~~Ri~~ 97 (685)
...+.+
T Consensus 84 ~~~~~~ 89 (736)
T PRK02362 84 FEEFSE 89 (736)
T ss_pred HHHHHH
T ss_conf 999998
No 50
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.23 E-value=0.0076 Score=38.27 Aligned_cols=66 Identities=26% Similarity=0.283 Sum_probs=41.0
Q ss_pred CHHHHHHHH-----CCCCCCEEEEECCCCCHHHHHHHHHHHHHHC---CCCCHHHEEEEEECHHHHHHHHHH----HHHH
Q ss_conf 988999985-----3898966999588988358999999999980---899978867621147999999999----9985
Q gi|254780952|r 31 NAQQTHAVT-----IPDDTPLLILAGAGTGKTTVLIARMLHLICH---KEIPPSKILAMTFTNQAIQEMKNR----LACY 98 (685)
Q Consensus 31 n~~Q~~av~-----~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~---~~~~p~~Il~iTFT~~AA~el~~R----i~~~ 98 (685)
.++|++-.. ...+++++|-||-|+|||. +||+-. .....++|++-|.|+.--+.+-++ +.+.
T Consensus 260 R~~Q~~ma~~V~~al~~~~~l~iEApTGtGKTl------aYLlPai~~A~~~~~~vvIST~T~~LQ~QL~~kdlp~L~~~ 333 (932)
T PRK08074 260 REGQQEMMKEVYTALRDSRHALIEAGTGTGKTL------AYLLPAAYFAKKKEEPVIISTYTVQLQQQLLEKDIPLLQKI 333 (932)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH------HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 878999999999998538847998688887136------87999999999759909999162889999998689999997
Q ss_pred CCCC
Q ss_conf 1645
Q gi|254780952|r 99 LGEK 102 (685)
Q Consensus 99 l~~~ 102 (685)
++..
T Consensus 334 l~~~ 337 (932)
T PRK08074 334 FPFP 337 (932)
T ss_pred HCCC
T ss_conf 1998
No 51
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.17 E-value=0.0036 Score=40.49 Aligned_cols=66 Identities=30% Similarity=0.333 Sum_probs=47.9
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCC
Q ss_conf 889999853898966999588988358999999999980899978867621147999999999998516458
Q gi|254780952|r 32 AQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKI 103 (685)
Q Consensus 32 ~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~ 103 (685)
++=.+++.. .+.++|.|.|||||||-+- .+|+.+. ..+++|+|+---|-||..+-+|+...+|+..
T Consensus 11 ~~i~~~l~~--~~~~vl~a~tGsGKtTqvP---~~ll~~~-~~~g~I~~~qPRR~AA~s~A~RvA~e~~e~~ 76 (812)
T PRK11664 11 PELLTALKT--APQVLLKAPTGAGKSTWLP---LQLLQQG-GINGKIIMLEPRRLAARNVAQRLAEQLGEKP 76 (812)
T ss_pred HHHHHHHHH--CCEEEEEECCCCCHHHHHH---HHHHHCC-CCCCCEEEECCHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999997--9979999089999899999---9999646-8899389938839999999999999729999
No 52
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.13 E-value=0.0011 Score=44.09 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=21.9
Q ss_pred EHHHHHHHHH---HHHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 0253210775---1134688787751111267887599995
Q gi|254780952|r 234 PYIMVDEYQD---INTPQYLLLRLLCQKEDSKQGARICCVG 271 (685)
Q Consensus 234 ~~ilVDEfQD---tn~~Q~~ll~~L~~~~~~~~~~~l~vVG 271 (685)
+.+=.|+|=+ ++..|+..|.....-+ .||.|||
T Consensus 111 ~vfTLDdYV~~gimtaaQ~d~l~~Av~ar-----~NIlv~G 146 (315)
T TIGR02782 111 RVFTLDDYVEAGIMTAAQRDVLREAVAAR-----KNILVVG 146 (315)
T ss_pred CCCCCHHHHHHCCCCHHHHHHHHHHHHHC-----CCEEEEC
T ss_conf 10470777640445578999999999712-----9889981
No 53
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.11 E-value=0.002 Score=42.22 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHCCCCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCC--CE
Q ss_conf 2998899998538989-66999588988358999999999980899978867621147999999999998516458--78
Q gi|254780952|r 29 GLNAQQTHAVTIPDDT-PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKI--PR 105 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~~-~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~--~~ 105 (685)
.|=.-|.+|...-..| +++|..|-|||||.+-.-=|...+.... -.+-|+|.-||+=|++=.+|+++.+..-. +.
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~--~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~ 147 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP--SARALLLYPTNALANDQAERLRELISDLPGKVT 147 (851)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC--CCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 200779999999977998899789988545898999999983086--650899804377676699999999984787513
Q ss_pred EEEHHH
Q ss_conf 961789
Q gi|254780952|r 106 IQTFHS 111 (685)
Q Consensus 106 i~T~Hs 111 (685)
++++++
T Consensus 148 ~~~y~G 153 (851)
T COG1205 148 FGRYTG 153 (851)
T ss_pred EEEECC
T ss_conf 544348
No 54
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0068 Score=38.60 Aligned_cols=96 Identities=25% Similarity=0.323 Sum_probs=55.7
Q ss_pred HHHHCCCCCCEEEE-ECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCC----------
Q ss_conf 99853898966999-5889883589999999999808999788676211479999999999985164587----------
Q gi|254780952|r 36 HAVTIPDDTPLLIL-AGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIP---------- 104 (685)
Q Consensus 36 ~av~~~~~~~~lV~-AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~---------- 104 (685)
+||. ..+++|+ |-+||||||-+-. +|++.+-..+..|.|+=-=|-||..+-+|+...++....
T Consensus 60 ~ai~---~~~vvii~getGsGKTTqlP~---~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe 133 (845)
T COG1643 60 KAIE---QNQVVIIVGETGSGKTTQLPQ---FLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFE 133 (845)
T ss_pred HHHH---HCCEEEEECCCCCCHHHHHHH---HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
T ss_conf 9998---697899867998875878899---9996001668759965843899999999999983898676543799962
Q ss_pred ---------EEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf ---------896178999999998499848798980728999999
Q gi|254780952|r 105 ---------RIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRT 140 (685)
Q Consensus 105 ---------~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~ 140 (685)
.+.| ++.-.+.++.....-++ +..|+|+...+.
T Consensus 134 ~~~s~~Trik~mT-dGiLlrei~~D~~Ls~y--s~vIiDEaHERS 175 (845)
T COG1643 134 SKVSPRTRIKVMT-DGILLREIQNDPLLSGY--SVVIIDEAHERS 175 (845)
T ss_pred CCCCCCCEEEEEC-CHHHHHHHHHCCCCCCC--CEEEEECHHHHH
T ss_conf 2678771468951-47999998438020458--779970133556
No 55
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.00085 Score=44.81 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=53.5
Q ss_pred HCCCHHHHHHHHCC-----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 62998899998538-----9896699958898835899999999998089997886762114799999999999851645
Q gi|254780952|r 28 KGLNAQQTHAVTIP-----DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEK 102 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~-----~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~ 102 (685)
..||++|..|+..- .-.+.|+-+..|||||.+..+.|+..|..+ +++|+|----+-...|-+|+..+.|
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G----kqvLvLVPEI~Ltpq~~~rf~~rFg-- 270 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG----KQVLVLVPEIALTPQLLARFKARFG-- 270 (730)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC----CEEEEEECCCCCHHHHHHHHHHHHC--
T ss_conf 1038899999999997505666536767778858999999999999759----8799995653456999999999867--
Q ss_pred CCEEEEHHH
Q ss_conf 878961789
Q gi|254780952|r 103 IPRIQTFHS 111 (685)
Q Consensus 103 ~~~i~T~Hs 111 (685)
..|.-+||
T Consensus 271 -~~v~vlHS 278 (730)
T COG1198 271 -AKVAVLHS 278 (730)
T ss_pred -CCHHHHCC
T ss_conf -87453146
No 56
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=97.04 E-value=0.00093 Score=44.55 Aligned_cols=48 Identities=31% Similarity=0.538 Sum_probs=37.9
Q ss_pred EEECCCCCCCCCEEEEC-CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCC
Q ss_conf 96113455669836984-6857668422129967878999999999858641169983132112
Q gi|254780952|r 574 MTLHAAKGLEFDTVFIS-GWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLFYTINRRT 636 (685)
Q Consensus 574 ~TIH~SKGLEfd~V~i~-gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~ 636 (685)
+|||||=|.=-|-|||. .- ..+ +|.|-||||||=|+.|-|+|-..-..
T Consensus 789 ~TIHKsQG~TVDRa~VLiAs--------~~~-------DRhLaYVaMTRHRe~v~lYa~~~df~ 837 (888)
T TIGR02768 789 ATIHKSQGVTVDRAFVLIAS--------KSM-------DRHLAYVAMTRHRESVQLYAGKEDFT 837 (888)
T ss_pred HHHHHCCCCEEEEEEEEEEC--------CCC-------CCCCCHHHHHEEECCEEEEECCCCCC
T ss_conf 34222359746567888415--------654-------30100222000102212564234588
No 57
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=97.03 E-value=0.00026 Score=48.33 Aligned_cols=15 Identities=47% Similarity=0.778 Sum_probs=5.7
Q ss_pred EEEECCCCCHHHHHH
Q ss_conf 999588988358999
Q gi|254780952|r 47 LILAGAGTGKTTVLI 61 (685)
Q Consensus 47 lV~AgaGsGKT~~L~ 61 (685)
+|++-|||||||.|.
T Consensus 434 vVvG~AGtGKSt~L~ 448 (888)
T TIGR02768 434 VVVGRAGTGKSTMLK 448 (888)
T ss_pred EEECCCCCCHHHHHH
T ss_conf 997489987667899
No 58
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.00 E-value=0.00033 Score=47.63 Aligned_cols=44 Identities=27% Similarity=0.526 Sum_probs=26.3
Q ss_pred EEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECC
Q ss_conf 96113455669836984685766842212996787899999999985864116998313
Q gi|254780952|r 574 MTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLFYTI 632 (685)
Q Consensus 574 ~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~~~~ 632 (685)
+|||||-|.--|.|+|.- .+ + + .|.|.||||||-++.+-|++..
T Consensus 696 ~TIHKsQG~TVDr~~VLa--s~---~---m-------DrhltYVAMTRHRe~~~Ly~~~ 739 (1102)
T PRK13826 696 TTIHKSQGATVDRVKVLA--SL---S---L-------DRHLTYVAMTRHREDLAVYYGR 739 (1102)
T ss_pred HHHHHHCCCCCCEEEEEC--CC---C---C-------CHHHHHHHHCCCCCCCEEEEEH
T ss_conf 454750486203389936--78---8---5-------3336364420040213112206
No 59
>PRK13767 ATP-dependent helicase; Provisional
Probab=96.97 E-value=0.005 Score=39.54 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=51.6
Q ss_pred CCCCCHHHHH----HCCCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHH-HHHHHHHHC--CCCC--HHHEEEEEECHHH
Q ss_conf 6832158887----62998899998538-98966999588988358999-999999980--8999--7886762114799
Q gi|254780952|r 18 FVPSCVPNYL----KGLNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLI-ARMLHLICH--KEIP--PSKILAMTFTNQA 87 (685)
Q Consensus 18 ~~~~~~~~~l----~~Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~-~ri~~Ll~~--~~~~--p~~Il~iTFT~~A 87 (685)
..++.+.+|+ ..+++-|++|+..- .+.++||+|+-|||||.... --+..|+.. .+.. +=.+|.||-+++=
T Consensus 17 ~l~p~v~~wf~~~~~~p~~~Q~~a~~~i~~G~~~Li~ApTGsGKTlAaflp~l~~l~~~~~~~~~~~~~~~LyIsPLkAL 96 (878)
T PRK13767 17 LLHPYVAEWFKRKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLGIIDELFRLAEEGELEDSVYCIYVSPLRAL 96 (878)
T ss_pred HCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHH
T ss_conf 27989999998537999989999999996799889989998139999999999999850003677887289996847988
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254780952|r 88 IQEMKNRLAC 97 (685)
Q Consensus 88 A~el~~Ri~~ 97 (685)
++++..++..
T Consensus 97 ~~D~~r~L~~ 106 (878)
T PRK13767 97 NNDIHRNLEE 106 (878)
T ss_pred HHHHHHHHHH
T ss_conf 9999998886
No 60
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=96.97 E-value=3.3e-05 Score=54.46 Aligned_cols=49 Identities=29% Similarity=0.386 Sum_probs=34.7
Q ss_pred EEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEE
Q ss_conf 9996113455669836984685766842212996787899999999985864116998
Q gi|254780952|r 572 QIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLF 629 (685)
Q Consensus 572 ~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~ 629 (685)
.++|+|.+-|+|||.|.++-..... ....+.++.+|||+||+++.|.+.
T Consensus 177 ~~~tv~e~qG~tf~~V~l~~~~~~~---------~~~~~~~~~~~VALTRh~~~l~i~ 225 (226)
T pfam01443 177 RATTVHEVQGLTFDSVTLVLDKDTD---------LLSISDPELLYVALTRHRKSLHIL 225 (226)
T ss_pred CCCCHHHCEEEECCCEEEEECCCCC---------CCCCCCCCCEEEEEECCCCEEEEE
T ss_conf 8202557626771609999788986---------543358676899825467678997
No 61
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.93 E-value=0.0015 Score=43.21 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHCCC---HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEE
Q ss_conf 68321588876299---8899998538989669995889883589999999999808999788676
Q gi|254780952|r 18 FVPSCVPNYLKGLN---AQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILA 80 (685)
Q Consensus 18 ~~~~~~~~~l~~Ln---~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~ 80 (685)
..|..+|.+- .|+ +==++.+.. ..|=+||+++=||||||||+.=|-|+ +.. .+.+|+-
T Consensus 101 ~ip~~Ip~fe-~LGLP~~v~~~~a~~-~~GLiLVTGPTGSGKSTTlAsmIDyI--N~~-~~~HIiT 161 (350)
T TIGR01420 101 LIPSKIPTFE-ELGLPRPVLRELAER-PRGLILVTGPTGSGKSTTLASMIDYI--NKN-KAGHIIT 161 (350)
T ss_pred HCCCCCCCHH-HCCCCHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHHH--HCC-CCCCCEE
T ss_conf 1153462166-637987899999836-69938987688986789999999787--403-8888256
No 62
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.90 E-value=0.0046 Score=39.79 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=52.4
Q ss_pred HCCCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 62998899998538-98966999588988358999999999980-89997886762114799999999999851645878
Q gi|254780952|r 28 KGLNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARMLHLICH-KEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPR 105 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~-~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~ 105 (685)
..+++=|++|+-.- .+..+++.|..|||||.+.+-=+...+.. ...+.-+.++++-||.-|..+.+.+..+......+
T Consensus 20 ~~pt~IQ~~~ip~il~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~ 99 (203)
T cd00268 20 EKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLK 99 (203)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999999999779988997579972228888699999861667689669999687999999999999850579838
Q ss_pred EEEH
Q ss_conf 9617
Q gi|254780952|r 106 IQTF 109 (685)
Q Consensus 106 i~T~ 109 (685)
+.++
T Consensus 100 ~~~~ 103 (203)
T cd00268 100 VVVI 103 (203)
T ss_pred EEEE
T ss_conf 9998
No 63
>TIGR01450 recC exodeoxyribonuclease V, gamma subunit; InterPro: IPR006697 The exodeoxyribonuclease V enzyme is a multisubunit enzyme comprised of the proteins RecB (IPR004586 from INTERPRO), RecC (this family) and RecD (IPR006344 from INTERPRO). This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (3.1.11.5 from EC) catalyzes hydrolysis of single-stranded (ss) DNA or double-stranded (ds) DNA and unwinding of the ends of dsDNA . Its nuclease activity is controlled by Chi sites (5' G-C-T-G-G-T-G-G 3') in such a way that the enzyme produces a potent single-stranded DNA substrate for homologous pairing by RecA and single-stranded DNA binding proteins.; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=96.90 E-value=0.038 Score=33.45 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=64.2
Q ss_pred CCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHC------------------CCHHHHHHHHHHHHHHHHHHHHEEEEE
Q ss_conf 89369996113455669836984685766842212------------------996787899999999985864116998
Q gi|254780952|r 568 SNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLS------------------INEGNVEGERRLAYVGITRAKKKCHLF 629 (685)
Q Consensus 568 ~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~------------------~~~~~~eEErRL~YVA~TRAk~~L~l~ 629 (685)
...|++.|+--.+.+-|.+|++.|+++|.||.... .+....++++-+|.-++.-|++.++++
T Consensus 725 ~g~~~~~~~~p~~~~p~~~~cl~g~~~g~~p~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~l~l~~~~~~~~~~~~~ 804 (1207)
T TIGR01450 725 AGGVNFCTLVPMRSLPFRVVCLLGLNDGDYPRQEPPLGFDLLAKEPGTAQRRPGDRSRRDDDRYLFLEALLSAREVLYVS 804 (1207)
T ss_pred CCCCHHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEE
T ss_conf 03320111100111340000133056455665433013445540234012033420000025789999876433321000
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCHHHHCCCH
Q ss_conf 3132112576543335556888723314783
Q gi|254780952|r 630 YTINRRTHDFTRVERYQPSQVSQFLLELYDP 660 (685)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~SrFl~El~~~ 660 (685)
|.... .....+..||..+.|+.+.
T Consensus 805 ~~g~~-------~~~~~~~~p~~~~~~l~~~ 828 (1207)
T TIGR01450 805 YVGRD-------IRDNSERPPSVLLGELLDY 828 (1207)
T ss_pred EECCC-------CCCCCCCCCHHHHHHHHHH
T ss_conf 10443-------1256432532578999998
No 64
>KOG1806 consensus
Probab=96.87 E-value=0.04 Score=33.31 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHEEEEEE
Q ss_conf 999999858641169983
Q gi|254780952|r 613 RLAYVGITRAKKKCHLFY 630 (685)
Q Consensus 613 RL~YVA~TRAk~~L~l~~ 630 (685)
|=|||||+||+-.|++.+
T Consensus 1224 rrlvva~srarlglyv~~ 1241 (1320)
T KOG1806 1224 RRLVVAMSRARLGLYVLC 1241 (1320)
T ss_pred HHHHHHHHHHHCCCHHHH
T ss_conf 999999988620414678
No 65
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.86 E-value=0.0032 Score=40.90 Aligned_cols=55 Identities=25% Similarity=0.401 Sum_probs=43.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 669995889883589999999999808999788676211479999999999985164
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE 101 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~ 101 (685)
.++|.|..|||||.+...-+.+.+... ...+++++.-|+..++++.+++....+.
T Consensus 2 ~~lv~~ptGsGKT~~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 56 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAERLKELFGE 56 (144)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 999988997179999999999999756--8976999746799999999999997488
No 66
>COG1204 Superfamily II helicase [General function prediction only]
Probab=96.82 E-value=0.0052 Score=39.40 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHCC--CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHH
Q ss_conf 2998899998538--9896699958898835899999999998089997886762114799999999999
Q gi|254780952|r 29 GLNAQQTHAVTIP--DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLA 96 (685)
Q Consensus 29 ~Ln~~Q~~av~~~--~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~ 96 (685)
.|++.|++||... .+++++|.|+-|||||-+-.-.+..-+.++ -.+++.|.-+++=|.|+.++..
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa~Ek~~~~~ 97 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALAEEKYEEFS 97 (766)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC---CCCEEEEECHHHHHHHHHHHHH
T ss_conf 755789987411125798679976788866999999999999855---9838999075999999999866
No 67
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.77 E-value=0.00045 Score=46.72 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHCCCC--CCEEEEECCCCCHHHHHHH-HHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 299889999853898--9669995889883589999-9999998089997886762114799999999999851645878
Q gi|254780952|r 29 GLNAQQTHAVTIPDD--TPLLILAGAGTGKTTVLIA-RMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPR 105 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~--~~~lV~AgaGsGKT~~L~~-ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~ 105 (685)
.|++||++|+.+-.+ +-.+|++-||||||++|.. |.++ +..| .+|..++.|-|||.+|.+ .....
T Consensus 346 ~Ls~EQ~~A~~hiT~~~~iavVvG~AGtGKStmL~aAReaw--Ea~G---yrV~GaALsGkAAegLe~-------~sGI~ 413 (992)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAW--EAAG---YEVRGAALSGIAAENLEG-------GSGIA 413 (992)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH--HHCC---CEEEEECCCHHHHHHHHH-------CCCCC
T ss_conf 87999999999864789758998338887889999999999--9779---889811500689997653-------47943
Q ss_pred EEEHHHHHHHH
Q ss_conf 96178999999
Q gi|254780952|r 106 IQTFHSFCASI 116 (685)
Q Consensus 106 i~T~Hsf~~~i 116 (685)
.+|++||-+..
T Consensus 414 SrTlAs~e~~w 424 (992)
T PRK13889 414 SRTIASLEHGW 424 (992)
T ss_pred CHHHHHHHHHH
T ss_conf 16799999987
No 68
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.77 E-value=0.011 Score=37.28 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=4.9
Q ss_pred HHHHHHCCCCCC
Q ss_conf 999985164587
Q gi|254780952|r 93 NRLACYLGEKIP 104 (685)
Q Consensus 93 ~Ri~~~l~~~~~ 104 (685)
+.|++.+|++++
T Consensus 16 ~~Vr~eLG~DAV 27 (412)
T PRK05703 16 KQIKEELGPDAV 27 (412)
T ss_pred HHHHHHHCCCEE
T ss_conf 999999789949
No 69
>PRK09694 hypothetical protein; Provisional
Probab=96.74 E-value=0.0098 Score=37.53 Aligned_cols=81 Identities=21% Similarity=0.206 Sum_probs=55.8
Q ss_pred CCHHHHHHHHCCCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC--CCCE
Q ss_conf 9988999985389896--69995889883589999999999808999788676211479999999999985164--5878
Q gi|254780952|r 30 LNAQQTHAVTIPDDTP--LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE--KIPR 105 (685)
Q Consensus 30 Ln~~Q~~av~~~~~~~--~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~--~~~~ 105 (685)
-|+-|..+... ..+| ++|.|.-|+|||..-.....+|...++. +.|...--|.+.++.|-+|+.+.+.. ..+.
T Consensus 289 PrplQ~~~~~l-~~~PgL~IiEAptG~GKTEAAL~~A~~L~~~~~~--~Gl~faLPT~ATaNaMf~Rv~~~~~~~~~~~~ 365 (878)
T PRK09694 289 PRQLQTLVDAL-PLAPGLTVIEAPTGSGKTETALAYAWKLIDQQLA--DSVIFALPTQATANAMLSRMEAAASKLFPSPN 365 (878)
T ss_pred CCHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 96799999845-6799879997589997589999999999973489--83699774798899999999999997368997
Q ss_pred EEEHHHHH
Q ss_conf 96178999
Q gi|254780952|r 106 IQTFHSFC 113 (685)
Q Consensus 106 i~T~Hsf~ 113 (685)
+.=.||-+
T Consensus 366 v~LaHg~a 373 (878)
T PRK09694 366 LILAHGNS 373 (878)
T ss_pred EEEECCHH
T ss_conf 69744736
No 70
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=96.73 E-value=0.0031 Score=40.95 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=27.4
Q ss_pred EHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEEEECHHHH
Q ss_conf 025321077511346887-8775111126788759999530688
Q gi|254780952|r 234 PYIMVDEYQDINTPQYLL-LRLLCQKEDSKQGARICCVGDENQC 276 (685)
Q Consensus 234 ~~ilVDEfQDtn~~Q~~l-l~~L~~~~~~~~~~~l~vVGD~dQs 276 (685)
-+|++||.|-|.+.|... |..|- .+++..+.||+-|.
T Consensus 245 AfVIlDEaQNtT~~QmKMfLTRiG------f~skmvItGD~tQi 282 (348)
T COG1702 245 AFVILDEAQNTTVGQMKMFLTRIG------FESKMVITGDITQI 282 (348)
T ss_pred EEEEEECCCCCCHHHHCEEEEEEC------CCCEEEEECCCCCC
T ss_conf 289985510050645134003313------77426997575211
No 71
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.69 E-value=0.0051 Score=39.47 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=33.6
Q ss_pred CCCCCCCCCCCCHHH---HHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 123211368321588---87629988999985389896699958898835899999999998
Q gi|254780952|r 11 SHILKGDFVPSCVPN---YLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLIC 69 (685)
Q Consensus 11 ~~~~~~~~~~~~~~~---~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~ 69 (685)
..+.+.||+|..++. =++.|-.-=+.++.....++++|.+.||||||.|. ..+..-+.
T Consensus 20 ~~~L~~~yvP~~l~~Re~Ei~~l~~~l~~~l~g~~~~n~~I~G~pGTGKT~~v-k~v~~~l~ 80 (394)
T PRK00411 20 EEVLEPDYVPENLPHREEQIEELAFALRPALRGSRPSNVLILGPPGTGKTTTV-KKVFEELE 80 (394)
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHH-HHHHHHHH
T ss_conf 63379988899898859999999999999975999984799889999899999-99999999
No 72
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=96.63 E-value=0.0081 Score=38.08 Aligned_cols=73 Identities=25% Similarity=0.301 Sum_probs=54.2
Q ss_pred CHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 15888762998899998538989669995889883589999999999808999788676211479999999999985164
Q gi|254780952|r 22 CVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE 101 (685)
Q Consensus 22 ~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~ 101 (685)
||...| |+=+.|..++. -++..|.||+||||.+= .-||...=.-.++|++|===|-||...-.|+.+.+|+
T Consensus 2 PI~~vL----P~Lr~al~~~~--~vvL~APpGAGKsT~~P---LaLL~~pW~~~~kIimLEPRRlAAR~~A~rlA~~LgE 72 (858)
T TIGR01970 2 PIEAVL----PALRDALAAHP--QVVLEAPPGAGKSTAVP---LALLDAPWLIGGKIIMLEPRRLAARSAAQRLASQLGE 72 (858)
T ss_pred CHHHHH----HHHHHHHHCCC--CEEEECCCCCCHHHHHH---HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 625676----99999861176--50641672247110588---9976626434880787474478999999999997088
Q ss_pred CC
Q ss_conf 58
Q gi|254780952|r 102 KI 103 (685)
Q Consensus 102 ~~ 103 (685)
..
T Consensus 73 ~V 74 (858)
T TIGR01970 73 EV 74 (858)
T ss_pred CC
T ss_conf 98
No 73
>PRK13766 Hef nuclease; Provisional
Probab=96.63 E-value=0.0076 Score=38.30 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 299889999853898966999588988358999999999980899978867621147999999999998516
Q gi|254780952|r 29 GLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG 100 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~ 100 (685)
..-+-|.+++.....++.+|..+-|+|||.+-+-.+++.+.. .+++|+.+.-|+.=+..=.+.+...++
T Consensus 15 e~R~YQ~el~~~Al~~NtiVvLPTG~GKT~IA~lvi~~~l~~---~~gKilFLaPT~pLV~Qq~~~~~~~l~ 83 (764)
T PRK13766 15 EARLYQQLLAAKALKGNTLVVLPTGLGKTAIALLVIAERLQK---YGGKVLILAPTKPLVEQHAEFFRKFLN 83 (764)
T ss_pred CCCHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 653879999999985898999599866899999999999974---898899985888899999999999709
No 74
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=96.61 E-value=0.013 Score=36.68 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-----CHHHEEEEEECHHHHHHHHHHHHHH
Q ss_conf 2998899998538-98966999588988358999999999980899-----9788676211479999999999985
Q gi|254780952|r 29 GLNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARMLHLICHKEI-----PPSKILAMTFTNQAIQEMKNRLACY 98 (685)
Q Consensus 29 ~Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~-----~p~~Il~iTFT~~AA~el~~Ri~~~ 98 (685)
..++=|.+||-.- .+..+++.|.-|||||.+-+-=+...|..... .|-+.|+|+-|+--|..+.+-+..+
T Consensus 23 ~PTpIQ~~aIP~iL~GrDvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aLIL~PTRELA~Qi~~~~~~l 98 (457)
T PRK10590 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (457)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 9999999999999779988998898118999999999999863676544568824999768799999999999974
No 75
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.57 E-value=0.021 Score=35.24 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=47.7
Q ss_pred CCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCCCHH------HEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 998899998538-989669995889883589999999-99980899978------8676211479999999999985164
Q gi|254780952|r 30 LNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARML-HLICHKEIPPS------KILAMTFTNQAIQEMKNRLACYLGE 101 (685)
Q Consensus 30 Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~-~Ll~~~~~~p~------~Il~iTFT~~AA~el~~Ri~~~l~~ 101 (685)
.++=|.++|-.- .+..+++.|.-|||||.+-.-=+. +|+.. ....+ +.|+|+-||.-|..+.+-+..+...
T Consensus 107 PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTlAyLLPil~~ll~~-~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~L~~~ 185 (472)
T PRK01297 107 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQT-PPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY 185 (472)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHC-CCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 9999999999997699889989998679999999999999717-751011368952999879999999999999997462
Q ss_pred CCCEEE
Q ss_conf 587896
Q gi|254780952|r 102 KIPRIQ 107 (685)
Q Consensus 102 ~~~~i~ 107 (685)
...++.
T Consensus 186 ~~l~v~ 191 (472)
T PRK01297 186 TGLNVM 191 (472)
T ss_pred CCCEEE
T ss_conf 797699
No 76
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=96.57 E-value=0.016 Score=35.98 Aligned_cols=90 Identities=24% Similarity=0.279 Sum_probs=54.1
Q ss_pred CCCCHHHHHH-----CCCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHH-HHHHC--CCCCHHHEEEEEECHHHHH
Q ss_conf 8321588876-----2998899998538-989669995889883589999999-99980--8999788676211479999
Q gi|254780952|r 19 VPSCVPNYLK-----GLNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARML-HLICH--KEIPPSKILAMTFTNQAIQ 89 (685)
Q Consensus 19 ~~~~~~~~l~-----~Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~-~Ll~~--~~~~p~~Il~iTFT~~AA~ 89 (685)
+++++-+-|+ .+++=|.+||-.- .+..+++.|.-|||||..-.-=+. +|+.. ..-.+-++|+|+-|+.-|.
T Consensus 10 L~~~l~~~L~~~g~~~pT~IQ~~aIp~il~g~dvl~~A~TGSGKTlaylLPil~~l~~~~~~~~~~~~~LIl~PTrELa~ 89 (417)
T PRK11192 10 LDPSLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAM 89 (417)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHH
T ss_conf 89999999997799999999999999997799889989998679999999999998752103689964999947199999
Q ss_pred HHHHHHHHHCCCCCCEEEE
Q ss_conf 9999999851645878961
Q gi|254780952|r 90 EMKNRLACYLGEKIPRIQT 108 (685)
Q Consensus 90 el~~Ri~~~l~~~~~~i~T 108 (685)
.+.+-+..+.......+.+
T Consensus 90 Qi~~~~~~l~~~~~i~~~~ 108 (417)
T PRK11192 90 QVADQARELAKHTHLDIAT 108 (417)
T ss_pred HHHHHHHHHHCCCCCCEEE
T ss_conf 9999999864005730599
No 77
>KOG0952 consensus
Probab=96.55 E-value=0.015 Score=36.23 Aligned_cols=74 Identities=24% Similarity=0.299 Sum_probs=57.2
Q ss_pred HCCCHHHHHH--HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC----CC--CHHHEEEEEECHHHHHHHHHHHHHHC
Q ss_conf 6299889999--8538989669995889883589999999999808----99--97886762114799999999999851
Q gi|254780952|r 28 KGLNAQQTHA--VTIPDDTPLLILAGAGTGKTTVLIARMLHLICHK----EI--PPSKILAMTFTNQAIQEMKNRLACYL 99 (685)
Q Consensus 28 ~~Ln~~Q~~a--v~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~----~~--~p~~Il~iTFT~~AA~el~~Ri~~~l 99 (685)
..||.=|-++ +.++++.+++|-|+-|||||-+..--|.++|.++ .+ +--+|+.|.-+++-|.||.+...+.+
T Consensus 109 ~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl 188 (1230)
T KOG0952 109 EEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKL 188 (1230)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHC
T ss_conf 88877787741465147887799777899716789999999998501455434687139999256889999999986642
Q ss_pred CC
Q ss_conf 64
Q gi|254780952|r 100 GE 101 (685)
Q Consensus 100 ~~ 101 (685)
+.
T Consensus 189 ~~ 190 (1230)
T KOG0952 189 AP 190 (1230)
T ss_pred CC
T ss_conf 42
No 78
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=96.54 E-value=0.0034 Score=40.70 Aligned_cols=43 Identities=26% Similarity=0.455 Sum_probs=27.4
Q ss_pred CCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEE---EECHHHH
Q ss_conf 89896--699958898835899999999998089997886762---1147999
Q gi|254780952|r 41 PDDTP--LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAM---TFTNQAI 88 (685)
Q Consensus 41 ~~~~~--~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~i---TFT~~AA 88 (685)
....| .|+++.=|+|||||+.. +|+.+...| .++++- || |+||
T Consensus 78 ~~~kp~Vil~VGVNG~GKTTTIaK-LA~~l~~~G---k~V~laAgDTF-RAAA 125 (284)
T TIGR00064 78 EEKKPNVILFVGVNGVGKTTTIAK-LANKLKKQG---KSVLLAAGDTF-RAAA 125 (284)
T ss_pred CCCCCEEEEEEEEECCCHHHHHHH-HHHHHHHCC---CEEEEECCCHH-HHHH
T ss_conf 478977999984408860102889-999998749---90899827524-7999
No 79
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.018 Score=35.76 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCCCCCEEE
Q ss_conf 9999999985164587896
Q gi|254780952|r 89 QEMKNRLACYLGEKIPRIQ 107 (685)
Q Consensus 89 ~el~~Ri~~~l~~~~~~i~ 107 (685)
+|--.+|+.-+|++++=++
T Consensus 13 ~EAm~~IK~ELG~DAVILs 31 (388)
T PRK12723 13 NEVIETVKKKYGKNARVMT 31 (388)
T ss_pred HHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999789919997
No 80
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=96.51 E-value=0.0013 Score=43.46 Aligned_cols=48 Identities=25% Similarity=0.187 Sum_probs=32.2
Q ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEHHHHH
Q ss_conf 5889883589999999999808999788676211479999999999985164587896178999
Q gi|254780952|r 50 AGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQTFHSFC 113 (685)
Q Consensus 50 AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~T~Hsf~ 113 (685)
++||||||++|-+-+.++ .+.+ ..++++..|-.||..+. | =.|+|||+
T Consensus 1 G~AGTGKS~ll~~i~~~l-~~~~---~~v~vtA~TGiAA~~i~-------g-----G~TiHs~~ 48 (418)
T pfam05970 1 GYGGTGKTFLWNALSARI-RSRG---KIVLNVASSGIAALLLP-------G-----GRTAHSRF 48 (418)
T ss_pred CCCCCCHHHHHHHHHHHH-HHCC---CEEEEECCHHHHHHCCC-------C-----CEEHHHCC
T ss_conf 979887999999999999-7689---88999896899985169-------9-----87398526
No 81
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.50 E-value=0.01 Score=37.35 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHCCC-----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 29988999985389-----8966999588988358999999999980899978867621147999999999998516
Q gi|254780952|r 29 GLNAQQTHAVTIPD-----DTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG 100 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~-----~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~ 100 (685)
.|++-|++|+.... ++..+|++.+|+|||.+-..-++.+ + .++|+|.-|+--....++++...++
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~----~---~~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL----K---RSTLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHH----C---CCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 88599999999999622257867999679998899999999982----6---9889997829999999999997348
No 82
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.49 E-value=0.025 Score=34.76 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=63.1
Q ss_pred CCCHHHHHHHH------CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC-
Q ss_conf 29988999985------38989669995889883589999999999808999788676211479999999999985164-
Q gi|254780952|r 29 GLNAQQTHAVT------IPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE- 101 (685)
Q Consensus 29 ~Ln~~Q~~av~------~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~- 101 (685)
++..-|..||. ......+||+=..|||||+|...-|-+|+.++ ..++||.|+=.+.-...-.+.....+..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~--~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSG--WVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHCC--HHHEEEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf 6227889999999999866874489997058885231999999999614--14305676126789999999999639886
Q ss_pred ------------C--CCEEEEHHHHHHHHHHHHHHHCCCCC---CCCCCCHHHH
Q ss_conf ------------5--87896178999999998499848798---9807289999
Q gi|254780952|r 102 ------------K--IPRIQTFHSFCASILRKHGEVVGLPT---DFAILDSAES 138 (685)
Q Consensus 102 ------------~--~~~i~T~Hsf~~~il~~~~~~~g~~~---~~~i~~~~~~ 138 (685)
. .+.++|+-++--.+..+....-.+++ ++-|+|+..+
T Consensus 243 ~~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR 296 (875)
T COG4096 243 TKMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR 296 (875)
T ss_pred CCEEEECCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHH
T ss_conf 401232014678630588760377875640654565567888312899606666
No 83
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=96.47 E-value=0.021 Score=35.27 Aligned_cols=55 Identities=11% Similarity=0.277 Sum_probs=39.0
Q ss_pred CCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 1553100000000136665311365303111010014788998752023320320331
Q gi|254780952|r 349 SQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGGS 406 (685)
Q Consensus 349 ~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~~ 406 (685)
+.+..+-...|+++|.+++..|-| |-|-+++-..+..|+..|.+.|||+++....
T Consensus 467 y~t~~~K~~Aii~ei~~~~~~GqP---VLVGT~SVe~SE~lS~~L~~~gi~h~VLNAk 521 (673)
T PRK12898 467 FLTLAAKWAAVAARVRELHASGRP---VLVGTRSVAASERLSALLREAGLPHQVLNAK 521 (673)
T ss_pred ECCHHHHHHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf 569999999999999999867998---8998375899999999999869975664786
No 84
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.024 Score=34.92 Aligned_cols=13 Identities=8% Similarity=0.074 Sum_probs=6.2
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 9999985164587
Q gi|254780952|r 92 KNRLACYLGEKIP 104 (685)
Q Consensus 92 ~~Ri~~~l~~~~~ 104 (685)
-.+++.-+|++++
T Consensus 15 l~~vk~eLG~DAV 27 (432)
T PRK12724 15 LMEMKMKYGSEAT 27 (432)
T ss_pred HHHHHHHHCCCEE
T ss_conf 9999999789929
No 85
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.44 E-value=0.032 Score=34.04 Aligned_cols=47 Identities=26% Similarity=0.280 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCCCHHHHHH-HHHHHHHHCCC-CCHHHEEEEEECHHHH
Q ss_conf 98966999588988358999-99999998089-9978867621147999
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLI-ARMLHLICHKE-IPPSKILAMTFTNQAI 88 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~-~ri~~Ll~~~~-~~p~~Il~iTFT~~AA 88 (685)
.++++++-|+-|||||-.+. .-++|+..+.. ....+|..+|=|..--
T Consensus 26 ~~~~~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ki~~~t~t~~~~ 74 (289)
T smart00488 26 RGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEI 74 (289)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCHHHH
T ss_conf 4997999899965189999999999999670102456168761537889
No 86
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.44 E-value=0.032 Score=34.04 Aligned_cols=47 Identities=26% Similarity=0.280 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCCCHHHHHH-HHHHHHHHCCC-CCHHHEEEEEECHHHH
Q ss_conf 98966999588988358999-99999998089-9978867621147999
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLI-ARMLHLICHKE-IPPSKILAMTFTNQAI 88 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~-~ri~~Ll~~~~-~~p~~Il~iTFT~~AA 88 (685)
.++++++-|+-|||||-.+. .-++|+..+.. ....+|..+|=|..--
T Consensus 26 ~~~~~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ki~~~t~t~~~~ 74 (289)
T smart00489 26 RGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEI 74 (289)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCHHHH
T ss_conf 4997999899965189999999999999670102456168761537889
No 87
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=96.44 E-value=0.04 Score=33.35 Aligned_cols=89 Identities=29% Similarity=0.365 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHCC------CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHH----HHHHHHH-----
Q ss_conf 2998899998538------989669995889883589999999999808999788676211479----9999999-----
Q gi|254780952|r 29 GLNAQQTHAVTIP------DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQ----AIQEMKN----- 93 (685)
Q Consensus 29 ~Ln~~Q~~av~~~------~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~----AA~el~~----- 93 (685)
+|-+-|.+||... ....+||.=..|||||+|.+.-+-.|+..+. .++||.|.=.+. |.+++++
T Consensus 416 ~lR~YQ~~AI~~v~~a~~~~~rraLl~MATGTGKTrtaial~~rLlk~~~--~kRILFLvDR~~L~~QA~~~F~~~~~~~ 493 (1126)
T PRK11448 416 GLRYYQEDAIQAVEKALANGQREILLAMATGTGKTRTAIALMYRLLKAKR--FKRILFLVDRRALGEQALDAFKDTKIEG 493 (1126)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 78688999999999999809854688724888589899999999996587--6725798565899999999875434545
Q ss_pred --HHHH-----HCC------CCCCEEEEHHHHHHHHHHH
Q ss_conf --9998-----516------4587896178999999998
Q gi|254780952|r 94 --RLAC-----YLG------EKIPRIQTFHSFCASILRK 119 (685)
Q Consensus 94 --Ri~~-----~l~------~~~~~i~T~Hsf~~~il~~ 119 (685)
.+.. .++ ...+.|+|+.+.-.+|+..
T Consensus 494 ~~~~~~~~~v~~l~~~~~~~~~rv~isT~q~m~~~i~~~ 532 (1126)
T PRK11448 494 NQTFASIYDIKGLTDKFPEDETKVHVATVQSMVKRILQS 532 (1126)
T ss_pred CCCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCC
T ss_conf 666400220010256787877719997307899875235
No 88
>PRK00254 ski2-like helicase; Provisional
Probab=96.42 E-value=0.039 Score=33.38 Aligned_cols=75 Identities=23% Similarity=0.226 Sum_probs=53.4
Q ss_pred CCCCHHHHHH-----CCCHHHHHHHHC--CCCCCEEEEECCCCCHHHHHHHHHHH-HHHCCCCCHHHEEEEEECHHHHHH
Q ss_conf 8321588876-----299889999853--89896699958898835899999999-998089997886762114799999
Q gi|254780952|r 19 VPSCVPNYLK-----GLNAQQTHAVTI--PDDTPLLILAGAGTGKTTVLIARMLH-LICHKEIPPSKILAMTFTNQAIQE 90 (685)
Q Consensus 19 ~~~~~~~~l~-----~Ln~~Q~~av~~--~~~~~~lV~AgaGsGKT~~L~~ri~~-Ll~~~~~~p~~Il~iTFT~~AA~e 90 (685)
+|+.+-++++ .|.|-|.+|+.. ..+.+++|.|+-|||||.+.---+.+ ++.+ + .+++.++-+++=|+|
T Consensus 8 ~~~~~~~~~~~~gI~~l~p~Q~e~l~~g~~~g~NllvsaPT~sGKTlvAElail~~~l~~-~---~k~iyi~P~kALa~E 83 (717)
T PRK00254 8 VDERIKEILKERGIEELYPPQAEALTSGVLEGKNLLIAIPTASGKTLIAEIAMVNKLLRE-G---GKAVYLVPLKALAEE 83 (717)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-C---CEEEEECCHHHHHHH
T ss_conf 998999999976987268999999874233698189989988748999999999999852-9---929999267999999
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254780952|r 91 MKNRLAC 97 (685)
Q Consensus 91 l~~Ri~~ 97 (685)
--..+..
T Consensus 84 K~~~f~~ 90 (717)
T PRK00254 84 KFREFKD 90 (717)
T ss_pred HHHHHHH
T ss_conf 9999987
No 89
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.19 E-value=0.044 Score=33.03 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=48.7
Q ss_pred CCCCHHHHHHC-----CCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHH-HHHHHCCCCC-----HHHEEEEEECHH
Q ss_conf 83215888762-----998899998538-98966999588988358999999-9999808999-----788676211479
Q gi|254780952|r 19 VPSCVPNYLKG-----LNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARM-LHLICHKEIP-----PSKILAMTFTNQ 86 (685)
Q Consensus 19 ~~~~~~~~l~~-----Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri-~~Ll~~~~~~-----p~~Il~iTFT~~ 86 (685)
++.++-.-|+. .++=|.+|+-.- .+..+++.|.-|||||.+-+-=+ .+|+...... .-+.|+|+-|+-
T Consensus 16 L~~~ll~~L~~~g~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLIL~PTRE 95 (423)
T PRK04837 16 LHPKVVEALEKKGFEYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALIMAPTRE 95 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHH
T ss_conf 69999999997799999999999999996799889989998749999999999999837453345567861899938899
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999985
Q gi|254780952|r 87 AIQEMKNRLACY 98 (685)
Q Consensus 87 AA~el~~Ri~~~ 98 (685)
-|..+.+-+..+
T Consensus 96 La~Qi~~~~~~l 107 (423)
T PRK04837 96 LAVQIHADAEPL 107 (423)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
No 90
>KOG0926 consensus
Probab=96.16 E-value=0.017 Score=35.96 Aligned_cols=67 Identities=25% Similarity=0.355 Sum_probs=45.3
Q ss_pred CHHHHHHHHCCCCCCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCH----HHEEEEEECH-HHHHHHHHHHHHHCCC
Q ss_conf 988999985389896699958-898835899999999998089997----8867621147-9999999999985164
Q gi|254780952|r 31 NAQQTHAVTIPDDTPLLILAG-AGTGKTTVLIARMLHLICHKEIPP----SKILAMTFTN-QAIQEMKNRLACYLGE 101 (685)
Q Consensus 31 n~~Q~~av~~~~~~~~lV~Ag-aGsGKT~~L~~ri~~Ll~~~~~~p----~~Il~iTFT~-~AA~el~~Ri~~~l~~ 101 (685)
-+||+ ++++-..+|++|++| -||||||-+-+ .|-+.+-..+ ..|+.||=-| -||-.|..|+..-++.
T Consensus 259 aeEq~-IMEaIn~n~vvIIcGeTGsGKTTQvPQ---FLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~ 331 (1172)
T KOG0926 259 AEEQR-IMEAINENPVVIICGETGSGKTTQVPQ---FLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV 331 (1172)
T ss_pred HHHHH-HHHHHHCCCEEEEECCCCCCCCCCCHH---HHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 78999-999862287499954888886443418---99871347766799870540572278999999999998525
No 91
>PRK10436 hypothetical protein; Provisional
Probab=96.13 E-value=0.018 Score=35.65 Aligned_cols=16 Identities=13% Similarity=0.032 Sum_probs=6.6
Q ss_pred CCEEEEECCCCCHHHH
Q ss_conf 9669995889883589
Q gi|254780952|r 44 TPLLILAGAGTGKTTV 59 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~ 59 (685)
+..+.+|.+---....
T Consensus 22 ~~~L~vA~~dP~~~~~ 37 (461)
T PRK10436 22 EESLHVAVVDAPSHAL 37 (461)
T ss_pred CCEEEEEEECCCCHHH
T ss_conf 9999999808999899
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.041 Score=33.24 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=57.6
Q ss_pred HCCCHHHHHHHHC-----CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC--
Q ss_conf 6299889999853-----898966999588988358999999999980899978867621147999999999998516--
Q gi|254780952|r 28 KGLNAQQTHAVTI-----PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG-- 100 (685)
Q Consensus 28 ~~Ln~~Q~~av~~-----~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~-- 100 (685)
-.|++.|+.|... ......+|-|..|||||..+-.-|++.+..++ +|...|---.-.-|+..|+.+...
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~----~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGG----RVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCC----EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 53272478999999999871576899974279851016999999996598----69984686101177789999762149
Q ss_pred -------CCC-----C-EEEEHHHH
Q ss_conf -------458-----7-89617899
Q gi|254780952|r 101 -------EKI-----P-RIQTFHSF 112 (685)
Q Consensus 101 -------~~~-----~-~i~T~Hsf 112 (685)
++. + -|.|-|.+
T Consensus 172 ~I~~Lyg~S~~~fr~plvVaTtHQL 196 (441)
T COG4098 172 DIDLLYGDSDSYFRAPLVVATTHQL 196 (441)
T ss_pred CEEEEECCCCHHCCCCEEEEEHHHH
T ss_conf 8666725871313344799766888
No 93
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.12 E-value=0.011 Score=37.31 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=22.5
Q ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 985389896699958898835899999999998
Q gi|254780952|r 37 AVTIPDDTPLLILAGAGTGKTTVLIARMLHLIC 69 (685)
Q Consensus 37 av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~ 69 (685)
++......++++.+.||||||+ |++.+++.+.
T Consensus 13 ~~~~~~~~~ill~GppGtGKT~-la~~ia~~~~ 44 (151)
T cd00009 13 ALELPPPKNLLLYGPPGTGKTT-LARAIANELF 44 (151)
T ss_pred HHHCCCCCEEEEECCCCCCHHH-HHHHHHHHHC
T ss_conf 9818799808998999988659-9999999712
No 94
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.09 E-value=0.01 Score=37.45 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=8.0
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 2675146787520244
Q gi|254780952|r 306 NYRSTTHILNTANKLI 321 (685)
Q Consensus 306 NyRS~~~Ii~~an~li 321 (685)
-+.+......+++.+.
T Consensus 50 ~~~~~~~~~~~~~~l~ 65 (283)
T pfam00437 50 PDPSPAAAMRLISRIA 65 (283)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 7799999999999999
No 95
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.07 E-value=0.022 Score=35.13 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=25.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEEC
Q ss_conf 699958898835899999999998089997886762114
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFT 84 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT 84 (685)
+++++.+|+|||+|++.-.+++.. .+ .+|.++|-.
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~-~~---~kV~lit~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK-KG---KKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CC---CEEEEEECC
T ss_conf 999899999889999999999997-69---928999748
No 96
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.07 E-value=0.028 Score=34.44 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=28.4
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEECHH
Q ss_conf 02532107751134688787751111267-887599995306
Q gi|254780952|r 234 PYIMVDEYQDINTPQYLLLRLLCQKEDSK-QGARICCVGDEN 274 (685)
Q Consensus 234 ~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~-~~~~l~vVGD~d 274 (685)
..++|||+|..+.--.+-|++|.+-.... .--.+++||.|.
T Consensus 125 ~vliIDEAq~L~~~~Le~Lr~L~n~e~~~~~ll~iiL~Gqpe 166 (269)
T TIGR03015 125 ALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE 166 (269)
T ss_pred EEEEEECHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEECCHH
T ss_conf 699972422199999999999970135888704899957867
No 97
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.02 E-value=0.018 Score=35.78 Aligned_cols=96 Identities=21% Similarity=0.214 Sum_probs=55.8
Q ss_pred CCCCCCCCCCHHHHH--HCC---CHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCHHHEEEEEECHH
Q ss_conf 321136832158887--629---9889999853898966999588988358999999999980-8999788676211479
Q gi|254780952|r 13 ILKGDFVPSCVPNYL--KGL---NAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICH-KEIPPSKILAMTFTNQ 86 (685)
Q Consensus 13 ~~~~~~~~~~~~~~l--~~L---n~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~-~~~~p~~Il~iTFT~~ 86 (685)
++-.-+=|..+.++. +.| .--=+.+|....=+++..=++||+|||+ | +.+|.. .+.+-..+=++|++.+
T Consensus 13 PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTT-l----A~liA~~~~~~f~~~sAv~~gvk 87 (436)
T COG2256 13 PLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTT-L----ARLIAGTTNAAFEALSAVTSGVK 87 (436)
T ss_pred CHHHHHCCCCHHHHCCHHHHHCCCCHHHHHHHCCCCCEEEEECCCCCCHHH-H----HHHHHHHHCCCEEEECCCCCCHH
T ss_conf 767770977787855718661899438999964998605777899988889-9----99998761776699515234679
Q ss_pred HHHHHHHHHHHHCCC---CCCEEEEHHHHH
Q ss_conf 999999999985164---587896178999
Q gi|254780952|r 87 AIQEMKNRLACYLGE---KIPRIQTFHSFC 113 (685)
Q Consensus 87 AA~el~~Ri~~~l~~---~~~~i~T~Hsf~ 113 (685)
--++.-++-.+..+. ....|--||-|-
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRfn 117 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRFN 117 (436)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEHHHHCC
T ss_conf 999999999998725883499872253337
No 98
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.01 E-value=0.046 Score=32.95 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=11.3
Q ss_pred EECHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 11479999999999985164587896
Q gi|254780952|r 82 TFTNQAIQEMKNRLACYLGEKIPRIQ 107 (685)
Q Consensus 82 TFT~~AA~el~~Ri~~~l~~~~~~i~ 107 (685)
+|+=+-.+|--.++++-+|++++=++
T Consensus 5 rf~a~~m~eAl~~Vr~eLG~DAVILS 30 (404)
T PRK06995 5 KFTGATSRDALRLVREALGADAVILS 30 (404)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 99769999999999999789939997
No 99
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.90 E-value=0.053 Score=32.51 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=51.6
Q ss_pred CCCCHHHHHHCC-----CHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHH
Q ss_conf 832158887629-----98899998538-989669995889883589999999999808999788676211479999999
Q gi|254780952|r 19 VPSCVPNYLKGL-----NAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMK 92 (685)
Q Consensus 19 ~~~~~~~~l~~L-----n~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~ 92 (685)
++.++-+-|+.+ ++=|.+||-.- .+..+++.|--|||||.+..-=+...|... ...-++|+|+-|+--|..+.
T Consensus 13 L~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~GkDvi~~AqTGSGKTlAFlLPiL~~l~~~-~~~pqaLIL~PTRELA~QV~ 91 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKAPQILVLAPTRELAVQVA 91 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHC-CCCCCEEEECCCHHHHHHHH
T ss_conf 89999999998799999999999999996799889978884789999999999986623-68986899789989999999
Q ss_pred HHHHHH
Q ss_conf 999985
Q gi|254780952|r 93 NRLACY 98 (685)
Q Consensus 93 ~Ri~~~ 98 (685)
+-+..+
T Consensus 92 ~~~~~l 97 (629)
T PRK11634 92 EAMTDF 97 (629)
T ss_pred HHHHHH
T ss_conf 999999
No 100
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=95.89 E-value=0.036 Score=33.63 Aligned_cols=64 Identities=27% Similarity=0.223 Sum_probs=42.1
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 8999985389896699958-898835899999999998089997886762114799999999999851645
Q gi|254780952|r 33 QQTHAVTIPDDTPLLILAG-AGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEK 102 (685)
Q Consensus 33 ~Q~~av~~~~~~~~lV~Ag-aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~ 102 (685)
+=.+||. ++.++|++| -||||||=+-. ++++.+......|.|.---|-||..+-+|++.-+|..
T Consensus 81 ~i~~~i~---~nqVvii~GeTGsGKTTQiPq---~~le~g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~ 145 (1295)
T PRK11131 81 DILEAIR---DHQVVIVAGETGSGKTTQLPK---ICLELGRGIKGLIGHTQPRRLAARTVANRIAEELETE 145 (1295)
T ss_pred HHHHHHH---HCCEEEEECCCCCCHHHHHHH---HHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999---799699976899987889999---9996279999989977965999999999999981999
No 101
>KOG0738 consensus
Probab=95.88 E-value=0.0096 Score=37.57 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=8.8
Q ss_pred HHCCCCCHHHHEEC
Q ss_conf 31136530311101
Q gi|254780952|r 368 NTGMSLNNIAILVR 381 (685)
Q Consensus 368 ~~g~~~~diAVL~R 381 (685)
..++.|.|||=|.+
T Consensus 206 np~ikW~DIagl~~ 219 (491)
T KOG0738 206 NPNIKWDDIAGLHE 219 (491)
T ss_pred CCCCCHHHHCCHHH
T ss_conf 99867676316499
No 102
>KOG1803 consensus
Probab=95.88 E-value=0.00074 Score=45.21 Aligned_cols=56 Identities=25% Similarity=0.244 Sum_probs=40.1
Q ss_pred CCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEE
Q ss_conf 93699961134556698369846857668422129967878999999999858641169983
Q gi|254780952|r 569 NCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLFY 630 (685)
Q Consensus 569 d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~~ 630 (685)
..|.|.|+-+--|.|+++||+.-+-.+ | -.+=+-+.|.|| +-||+||||+++.+..
T Consensus 549 ~~veV~TVD~fQGrEkdvVIfsmVRSN--~---k~evGFL~e~RR-LNVAiTRaRRh~~vIg 604 (649)
T KOG1803 549 RDVEVGTVDGFQGREKDVVIFSLVRSN--D---KGEVGFLGETRR-LNVAITRARRHFVVIG 604 (649)
T ss_pred CCCEEECCCCCCCCEEEEEEEEEEEEC--C---CCCCCCCCCCCE-EEEEEEECCCEEEEEC
T ss_conf 663460212535521018999999636--7---654443477643-5678873241389981
No 103
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.88 E-value=0.013 Score=36.71 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=5.3
Q ss_pred EEEEECCCCCHH
Q ss_conf 699958898835
Q gi|254780952|r 46 LLILAGAGTGKT 57 (685)
Q Consensus 46 ~lV~AgaGsGKT 57 (685)
+.|--+=|-|.=
T Consensus 33 l~v~~SfGqGN~ 44 (459)
T PRK11331 33 LRVKLSFGYGNF 44 (459)
T ss_pred CEEEEEECCCCC
T ss_conf 268986357662
No 104
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=95.82 E-value=0.033 Score=33.93 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=26.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 669995889883589999999999808999788676211
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
.+++++..|+|||+|++.-.+++... + .+|.++|-
T Consensus 3 vi~lvGptGvGKTTTiaKLAa~~~~~-~---~~V~lit~ 37 (196)
T pfam00448 3 VILLVGLQGSGKTTTIAKLAAYLKKQ-G---KKVLLVAA 37 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C---CEEEEEEC
T ss_conf 99998999998899999999999977-9---92899975
No 105
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.82 E-value=0.016 Score=36.10 Aligned_cols=39 Identities=36% Similarity=0.411 Sum_probs=28.8
Q ss_pred CCCCCCCHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 136832158887629988999985389896699958898835899999
Q gi|254780952|r 16 GDFVPSCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIAR 63 (685)
Q Consensus 16 ~~~~~~~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~r 63 (685)
.-+++.++.++|. .+|. ...+++|.++.|||||++|-.-
T Consensus 7 ~G~~~~~~~~~L~-------~~v~--~~~nIlIsG~tGSGKTTll~al 45 (186)
T cd01130 7 QGTFSPLQAAYLW-------LAVE--ARKNILISGGTGSGKTTLLNAL 45 (186)
T ss_pred CCCCCHHHHHHHH-------HHHH--CCCCEEEECCCCCCHHHHHHHH
T ss_conf 6999999999999-------9998--5998999899999899999999
No 106
>PRK01172 ski2-like helicase; Provisional
Probab=95.81 E-value=0.083 Score=31.16 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=52.0
Q ss_pred CCCCHHHHHHC----CCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHH
Q ss_conf 83215888762----998899998538-9896699958898835899999999998089997886762114799999999
Q gi|254780952|r 19 VPSCVPNYLKG----LNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKN 93 (685)
Q Consensus 19 ~~~~~~~~l~~----Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~ 93 (685)
.|..+-+++.+ |.|-|.+|+..- .+.+++|.|+-|||||.+.---+.+.+..+ .+++.++-.++=++|..+
T Consensus 8 ~~~~~~~~~~~~g~~l~p~Q~ea~~~~~~gkNllvsaPTgsGKTlvAe~ai~~~l~~~----~k~iyi~P~kAL~~EK~~ 83 (674)
T PRK01172 8 YDDEFLNLFTGNDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG----LKSIYIVPLRSLAMEKYE 83 (674)
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC----CCEEEECCHHHHHHHHHH
T ss_conf 9979999999679988989999999997799599978999869999999999999858----979998778999999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780952|r 94 RLAC 97 (685)
Q Consensus 94 Ri~~ 97 (685)
-+..
T Consensus 84 ~~~~ 87 (674)
T PRK01172 84 ELSR 87 (674)
T ss_pred HHHH
T ss_conf 9998
No 107
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=95.79 E-value=0.062 Score=32.00 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=48.0
Q ss_pred CCCCHHHHHHC-----CCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHH
Q ss_conf 83215888762-----998899998538-989669995889883589999999999808999788676211479999999
Q gi|254780952|r 19 VPSCVPNYLKG-----LNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMK 92 (685)
Q Consensus 19 ~~~~~~~~l~~-----Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~ 92 (685)
.++++-.-|+. +++=|++|+-.- .+..+++.|.-|||||..-.-=+...+.... ..-+.|+|+-||--|....
T Consensus 11 L~~~ll~aL~~~G~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~l~~~~-~~~qaLIL~PTRELa~QV~ 89 (459)
T PRK11776 11 LPPALLANLDELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-FRVQALVLCPTRELADQVA 89 (459)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC-CCCCEEEEECHHHHHHHHH
T ss_conf 799999999977999999899999999977998899889985899999999998411367-8985999967599999999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780952|r 93 NRLAC 97 (685)
Q Consensus 93 ~Ri~~ 97 (685)
+-+..
T Consensus 90 ~~~~~ 94 (459)
T PRK11776 90 KEIRR 94 (459)
T ss_pred HHHHH
T ss_conf 99999
No 108
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.72 E-value=0.024 Score=34.87 Aligned_cols=52 Identities=31% Similarity=0.470 Sum_probs=34.4
Q ss_pred CCCCEEEE-ECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHH
Q ss_conf 98966999-588988358999999999980899978867621147999999999998
Q gi|254780952|r 42 DDTPLLIL-AGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLAC 97 (685)
Q Consensus 42 ~~~~~lV~-AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~ 97 (685)
..|.+.|+ |.||+|||+.+.+-+.+++...| .+++.+++ .-...++..|+.+
T Consensus 28 ~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g---~~vl~~Sl-Em~~~~~~~Rlls 80 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHG---VRVGTISL-EEPVVRTARRLLG 80 (271)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CEEEEEEC-CCCHHHHHHHHHH
T ss_conf 99808999968998699999999999999769---90899970-4999999999999
No 109
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.68 E-value=0.024 Score=34.86 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=22.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 69995889883589999999999808999788676211
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
++.++..|+|||||++.- |+.+...+ .+++++|-
T Consensus 78 I~lvG~~G~GKTTT~AKL-A~~~~~~~---~kV~lia~ 111 (270)
T PRK06731 78 IALIGPTGVGKTTTLAKM-AWQFHGKK---KTVGFITT 111 (270)
T ss_pred EEEECCCCCCHHHHHHHH-HHHHHHCC---CEEEEEEE
T ss_conf 999888989889999999-99998679---90899983
No 110
>KOG0330 consensus
Probab=95.60 E-value=0.11 Score=30.42 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=50.6
Q ss_pred HCCCHHHHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHH
Q ss_conf 6299889999853-8989669995889883589999999-999808999788676211479999999999985
Q gi|254780952|r 28 KGLNAQQTHAVTI-PDDTPLLILAGAGTGKTTVLIARML-HLICHKEIPPSKILAMTFTNQAIQEMKNRLACY 98 (685)
Q Consensus 28 ~~Ln~~Q~~av~~-~~~~~~lV~AgaGsGKT~~L~~ri~-~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~ 98 (685)
...++-|++|+-. ..+++++..|--|||||-+.+--|. +|+.+ . .+-..|++|-||--|..+.+-...+
T Consensus 82 ~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~-p-~~~~~lVLtPtRELA~QI~e~fe~L 152 (476)
T KOG0330 82 KKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE-P-KLFFALVLTPTRELAQQIAEQFEAL 152 (476)
T ss_pred CCCCHHHHHHCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-C-CCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 787444452065543798579994358884023179999999719-8-7744899648289999999999875
No 111
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=95.58 E-value=0.0072 Score=38.44 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=40.7
Q ss_pred EEEEECHHHHHHHHHHHHHHCCCCC-----------------CEEEE-HH-HHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 7621147999999999998516458-----------------78961-78-99999999849984879898072899999
Q gi|254780952|r 79 LAMTFTNQAIQEMKNRLACYLGEKI-----------------PRIQT-FH-SFCASILRKHGEVVGLPTDFAILDSAESR 139 (685)
Q Consensus 79 l~iTFT~~AA~el~~Ri~~~l~~~~-----------------~~i~T-~H-sf~~~il~~~~~~~g~~~~~~i~~~~~~~ 139 (685)
-+|=--.++.+|=|+|+++.+-... ++-|| |+ +.|-.||.-- +.-|..
T Consensus 28 ~~VGLp~~~vkEsreRVksAl~Ns~F~fP~~rI~iNLAPAdl~KeG~~FDLpIAI~ilaas-------------eq~da~ 94 (505)
T TIGR00368 28 TIVGLPETTVKESRERVKSALKNSGFKFPAKRITINLAPADLPKEGGRFDLPIAIGILAAS-------------EQLDAK 94 (505)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH-------------HHHHHH
T ss_conf 3433886310566789999986157668854016653888876678886338999999986-------------333043
Q ss_pred HH-HHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99-999999739985478989999998667541589
Q gi|254780952|r 140 TI-IKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWN 174 (685)
Q Consensus 140 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~ 174 (685)
.| =-+++.++.++-.-....-++..+..++..++.
T Consensus 95 ~L~~yl~lGEL~LdG~lR~i~gvlP~~~~A~k~~~~ 130 (505)
T TIGR00368 95 KLDEYLFLGELALDGKLRGIKGVLPAIALAQKSGRK 130 (505)
T ss_pred CCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 144011001133247511045689999999865876
No 112
>PTZ00110 helicase; Provisional
Probab=95.58 E-value=0.088 Score=30.98 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=43.8
Q ss_pred CCHHHHHHHHCCCC-CCEEEEECCCCCHHHHHHHH-HHHHHHCCCCCHH---HEEEEEECHHHHHHHHHHHHH
Q ss_conf 99889999853898-96699958898835899999-9999980899978---867621147999999999998
Q gi|254780952|r 30 LNAQQTHAVTIPDD-TPLLILAGAGTGKTTVLIAR-MLHLICHKEIPPS---KILAMTFTNQAIQEMKNRLAC 97 (685)
Q Consensus 30 Ln~~Q~~av~~~~~-~~~lV~AgaGsGKT~~L~~r-i~~Ll~~~~~~p~---~Il~iTFT~~AA~el~~Ri~~ 97 (685)
-+|=|.+++=.-.. .-++.+|--|||||-.-.-= +.++..+....+. .+|+|+-||--|..+.+-+..
T Consensus 205 PTPIQ~qaIPiaLsGrDvIgiAqTGSGKTLAFlLP~l~hi~~q~~~~~~~gP~aLILaPTRELA~QI~~e~~~ 277 (602)
T PTZ00110 205 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRPGDGPIVLVLAPTRELAEQIREQALQ 277 (602)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 9989999987985698679987897889999999999998516343678997699973839999999999999
No 113
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.56 E-value=0.035 Score=33.70 Aligned_cols=12 Identities=8% Similarity=0.324 Sum_probs=5.1
Q ss_pred EEEEECCCCCCC
Q ss_conf 999611345566
Q gi|254780952|r 572 QIMTLHAAKGLE 583 (685)
Q Consensus 572 ~i~TIH~SKGLE 583 (685)
+|+.|...+|.|
T Consensus 293 rv~eI~eV~g~~ 304 (323)
T PRK13833 293 RVRDVIHVEGFA 304 (323)
T ss_pred EEEEEEEEECCC
T ss_conf 899999993245
No 114
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.55 E-value=0.033 Score=33.90 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHH
Q ss_conf 9896699958898835899999999998089997886762114799999999999
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLA 96 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~ 96 (685)
.+.-++|.+.||||||.-..+-+..-+.+. .++++.+||... ..++..+..
T Consensus 18 ~gs~~LI~G~pGsGKT~la~qfl~~ga~~~---ge~~lYis~ee~-~~~l~~~~~ 68 (231)
T pfam06745 18 EGRVVLITGGPGTGKTIFGLQFLYNGALEY---GEPGVYVTLEEP-PEDLRENAK 68 (231)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHC---CCCEEEEEECCC-HHHHHHHHH
T ss_conf 996999985897259999999999999865---896899981379-999999999
No 115
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.53 E-value=0.031 Score=34.08 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=25.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHH
Q ss_conf 69995889883589999999999808999788676211479
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQ 86 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~ 86 (685)
.||.++||||||....+-+.+.+.+ | ++++.+||...
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~-g---e~~lyis~eE~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-G---EPGLYVTLEES 38 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHC-C---CCEEEEEECCC
T ss_conf 1587689999999999999999876-9---97899995079
No 116
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=95.50 E-value=0.13 Score=29.75 Aligned_cols=103 Identities=21% Similarity=0.176 Sum_probs=58.2
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHH----HHHHHHHHHHCCCCC----
Q ss_conf 889999853898966999588988358999999999980899978867621147999----999999998516458----
Q gi|254780952|r 32 AQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAI----QEMKNRLACYLGEKI---- 103 (685)
Q Consensus 32 ~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA----~el~~Ri~~~l~~~~---- 103 (685)
|-|--....-.+|. +.-=--|-|||-|.+- -+||- ....+.+-++|.+.--| ..| ..|-..||-..
T Consensus 85 dvQl~gg~~lh~g~-iaEM~TGEGKTL~atl-p~yln---al~g~gvhvvTvNdYLA~RDae~m-~~~y~~lGltvg~i~ 158 (896)
T PRK13104 85 DVQLIGGMVLHEGN-IAEMRTGEGKTLVATL-PAYLN---AISGRGVHIVTVNDYLAKRDSQWM-KPIYEFLGLTVGVIY 158 (896)
T ss_pred HHHHHHHHHHHCCC-EEEECCCCCHHHHHHH-HHHHH---HHCCCCEEEECCCHHHHHHHHHHH-HHHHHHHCCEEEEEC
T ss_conf 79999899984585-1465178855999999-99998---755997199726535446449999-999998197673418
Q ss_pred ---------------CEEEEHHHHHHHHHHHHH-----HHCCCCCCCCCCCHHHHHH
Q ss_conf ---------------789617899999999849-----9848798980728999999
Q gi|254780952|r 104 ---------------PRIQTFHSFCASILRKHG-----EVVGLPTDFAILDSAESRT 140 (685)
Q Consensus 104 ---------------~~i~T~Hsf~~~il~~~~-----~~~g~~~~~~i~~~~~~~~ 140 (685)
..-+|=..|++.-||.+- .....+.+|.|+|+.|...
T Consensus 159 ~~~~~~~r~~aY~~DitY~Tn~e~gFDyLrDnm~~~~~~~vqr~~~~aivDEvDSiL 215 (896)
T PRK13104 159 PDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred CCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCHHCCHHHHCCCCCCEEEEECHHHHH
T ss_conf 999979999971499379678654152357211138476256677647874223543
No 117
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.48 E-value=0.03 Score=34.14 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=26.8
Q ss_pred CCCHHHHHHHH---CCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 29988999985---389896699958898835899999999
Q gi|254780952|r 29 GLNAQQTHAVT---IPDDTPLLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 29 ~Ln~~Q~~av~---~~~~~~~lV~AgaGsGKT~~L~~ri~~ 66 (685)
++.++|.+.+. ....|-++|.+..|||||+||..-+.+
T Consensus 63 G~~~~~~~~l~~~~~~~~GlilitGptGSGKtTtl~a~l~~ 103 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999999999997089988999789999779999999986
No 118
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.46 E-value=0.012 Score=36.87 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=22.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 8989669995889883589999999999
Q gi|254780952|r 41 PDDTPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 41 ~~~~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
+..|++|+.+.|||||| ||+.+++.||
T Consensus 27 p~~ggvLi~G~~GtgKS-tlaR~l~~iL 53 (334)
T PRK13407 27 PGIGGVLVFGDRGTGKS-TAVRALAALL 53 (334)
T ss_pred CCCCEEEEECCCCCCHH-HHHHHHHHHC
T ss_conf 89860899789986599-9999999728
No 119
>KOG1804 consensus
Probab=95.44 E-value=0.0045 Score=39.83 Aligned_cols=38 Identities=32% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHH
Q ss_conf 99958898835899999999998089997886762114799
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQA 87 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~A 87 (685)
.++.|+|.|+|.++...+..++... ..+++..+=.+.|
T Consensus 143 ~L~~G~~~~~~~~~~~~~~~~~~~~---~~k~~~~l~~~~~ 180 (775)
T KOG1804 143 SLLIGPGTGETLELAQAVKSLLQQE---EAKILILLHSESA 180 (775)
T ss_pred CCCCCCCCCCCEEECCHHHCCCCCC---CCCCEEEECHHHH
T ss_conf 2014876656356302121322112---3332476005677
No 120
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.43 E-value=0.097 Score=30.70 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=40.5
Q ss_pred CCCHHHHHHHH-----CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHH
Q ss_conf 29988999985-----389896699958898835899999999998089997886762114799999999999
Q gi|254780952|r 29 GLNAQQTHAVT-----IPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLA 96 (685)
Q Consensus 29 ~Ln~~Q~~av~-----~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~ 96 (685)
..-++|++.+. ...+++++|.||-|||||.....-+..--.+ ...+++..|-|+..-..+-++..
T Consensus 15 ~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~---~~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 15 EPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE---EGKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHHHHHHH
T ss_conf 98989999999999998168718998899851759999999986775---29759998995768889876213
No 121
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=95.43 E-value=0.17 Score=29.03 Aligned_cols=54 Identities=22% Similarity=0.400 Sum_probs=40.6
Q ss_pred ECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECC--CHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 31553100000000136665311365303111010--014788998752023320320331
Q gi|254780952|r 348 VSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRT--SWQTRKFEDAFLEQEIPHKVIGGS 406 (685)
Q Consensus 348 ~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rt--n~~~~~l~~~L~~~gIP~~~~g~~ 406 (685)
.+.+..+-...|+++|.+++..|-| ||+-| =..+..++..|.++|||+.+....
T Consensus 402 vy~t~~~K~~Av~~ei~~~h~~GqP-----VLvGT~SVe~SE~ls~~L~~~gi~h~vLNAk 457 (891)
T CHL00122 402 VYKTEYSKWKAIADECFDMHKIGRP-----ILVGTTSVEKSELLSQLLEEYQLPHNLLNAK 457 (891)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCC-----EEEECCCHHHHHHHHHHHHHCCCCCHHHCCC
T ss_conf 7788999999999999999967999-----8983465588999999999747862202388
No 122
>KOG1805 consensus
Probab=95.41 E-value=0.073 Score=31.55 Aligned_cols=57 Identities=30% Similarity=0.323 Sum_probs=42.2
Q ss_pred EEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHH-HHHHHHHHHHHHHHHHHEEEEEECCC
Q ss_conf 6999611345566983698468576684221299678-78999999999858641169983132
Q gi|254780952|r 571 IQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGN-VEGERRLAYVGITRAKKKCHLFYTIN 633 (685)
Q Consensus 571 V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~-~eEErRL~YVA~TRAk~~L~l~~~~~ 633 (685)
|.|-||-+=-|.+=++|++... ++......++ +++.||| -||+||||++|++.-+.+
T Consensus 998 lEinTVD~yQGRDKd~IivSfv-----rsn~~~~~~eLLkD~rRl-NVAlTRAK~KLIlvGs~s 1055 (1100)
T KOG1805 998 LEINTVDRYQGRDKDCIIVSFV-----RSNKKSKVGELLKDWRRL-NVALTRAKKKLILVGSKS 1055 (1100)
T ss_pred EEEEEHHHHCCCCCCEEEEEEE-----ECCCCCCHHHHHHHHHHH-HHHHHHHHCEEEEEECCC
T ss_conf 4553024323777877999997-----148866277787766777-889876304089993311
No 123
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.41 E-value=0.038 Score=33.51 Aligned_cols=48 Identities=25% Similarity=0.378 Sum_probs=24.9
Q ss_pred CCCCHHHHHH-CCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 8321588876-299889999853898966999588988358999999999
Q gi|254780952|r 19 VPSCVPNYLK-GLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHL 67 (685)
Q Consensus 19 ~~~~~~~~l~-~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~L 67 (685)
.|+.+|.+-+ +|.+-=++.+. ...|-+||.+.-|||||+||+.-|-|+
T Consensus 101 Ip~~i~~~e~LglP~i~~~~~~-~~~GLILVTGpTGSGKSTTlAamId~i 149 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRELAE-SPRGLILVTGPTGSGKSTTLAAMIDYI 149 (353)
T ss_pred CCCCCCCHHHCCCCHHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6766899878199779999982-879669986799996787999999998
No 124
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.35 E-value=0.088 Score=30.97 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=46.1
Q ss_pred CCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCC---CH--HHEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 998899998538-989669995889883589999999-99980899---97--8867621147999999999998516
Q gi|254780952|r 30 LNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARML-HLICHKEI---PP--SKILAMTFTNQAIQEMKNRLACYLG 100 (685)
Q Consensus 30 Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~-~Ll~~~~~---~p--~~Il~iTFT~~AA~el~~Ri~~~l~ 100 (685)
.++=|.++|-.- .+..+++.|--|||||.+-.-=+. +|+...+. .+ -+.|+|+-|+--|..+.+-+..+..
T Consensus 32 PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aLILvPTRELA~QI~~~~~~l~~ 109 (574)
T PRK04537 32 CTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGA 109 (574)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 999999999999579988998489888999999999999983744345778996199977989999999999999864
No 125
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=95.30 E-value=0.05 Score=32.69 Aligned_cols=56 Identities=23% Similarity=0.372 Sum_probs=38.3
Q ss_pred HHHHCCCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHC
Q ss_conf 9985389896-699958898835899999999998089997886762114799999999999851
Q gi|254780952|r 36 HAVTIPDDTP-LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYL 99 (685)
Q Consensus 36 ~av~~~~~~~-~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l 99 (685)
+|+. ..+.+ +++.|+=|||||..-.- ..+. ++ .+++.|+-|++-++.+.+|+..++
T Consensus 7 ~~~~-~~~~~~ivitAPTgsGKT~Aa~l---p~l~-~~---~~~lyi~P~kAL~~Dq~~~l~~~~ 63 (357)
T TIGR03158 7 EALQ-SKDADIIFNTAPTGAGKTLAWLT---PLLH-GE---NDTIALYPTNALIEDQTEAIKEFV 63 (357)
T ss_pred HHHH-CCCCCEEEEECCCCCCHHHHHHH---HHHH-CC---CCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 9997-68998699989998569999999---9973-89---879997778999999999999999
No 126
>pfam02399 Herpes_ori_bp Origin of replication binding protein. This Pfam family represents the herpesvirus origin of replication binding protein, probably involved in DNA replication.
Probab=95.30 E-value=0.058 Score=32.22 Aligned_cols=52 Identities=27% Similarity=0.410 Sum_probs=37.6
Q ss_pred CCCEE-EEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHH
Q ss_conf 89669-99588988358999999999980899978867621147999999999998
Q gi|254780952|r 43 DTPLL-ILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLAC 97 (685)
Q Consensus 43 ~~~~l-V~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~ 97 (685)
..|+. |-|+=|||||+.|++=....|. .+-.++|+++=-|.=++++-+|+..
T Consensus 48 ~r~V~VVRAPMGSGKTTALi~wL~~~L~---~~d~SvLVVSCRRSFT~tL~~Rf~~ 100 (829)
T pfam02399 48 ARPVLVVRAPMGSGKTTALIEWLRAALD---SPDTSVLVVSCRRSFTQTLLDRFND 100 (829)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHC---CCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 7446899768888718999999999737---8665499997016789999999986
No 127
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.25 E-value=0.027 Score=34.48 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=22.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 6699958898835899999999998089997
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIPP 75 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p 75 (685)
.++|.+.||+|||+ |++++++...++...+
T Consensus 2 ~i~i~G~aG~GKTt-ll~kl~~~wa~g~~~~ 31 (165)
T pfam05729 2 TVILQGEAGSGKTT-LLQKLALLWAQGKLPQ 31 (165)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHHHCCCCCC
T ss_conf 89998279898999-9999999998698436
No 128
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=95.24 E-value=0.0054 Score=39.31 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=27.1
Q ss_pred EEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9961134556698369846857668422129967878999999999858
Q gi|254780952|r 573 IMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGERRLAYVGITR 621 (685)
Q Consensus 573 i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEErRL~YVA~TR 621 (685)
-+|||||=|+-+|.|.| ++..+.|-+. ..|||++|
T Consensus 384 AiTIHKsQG~Tld~~~v-dl~~~~F~~G-------------Q~YVALSR 418 (418)
T pfam05970 384 AMTINKSQGQTLSKVGL-YLPRPVFTHG-------------QLYVALSR 418 (418)
T ss_pred EEEEECCHHHECCCEEE-ECCCCCCCCC-------------CCEEEECC
T ss_conf 99888230213243899-6899967999-------------93466119
No 129
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.21 E-value=0.052 Score=32.52 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=28.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHH
Q ss_conf 8989669995889883589999999999808999788676211479999
Q gi|254780952|r 41 PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQ 89 (685)
Q Consensus 41 ~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~ 89 (685)
+.+...||.++||||||+--.+-+.+=+.+. -++.|.+||+....+
T Consensus 22 p~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~---GE~~lyitl~E~~~~ 67 (501)
T PRK09302 22 PKGRPTLVSGTAGTGKTLFALQFLHNGIKSF---GEPGVFVTFEESPED 67 (501)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCHHH
T ss_conf 8997799983899999999999999998855---997899985799999
No 130
>PRK12377 putative replication protein; Provisional
Probab=95.18 E-value=0.058 Score=32.23 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=11.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9669995889883589999999999
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
++++.+++||+|||+..+.-...++
T Consensus 102 ~NlIf~G~pGtGKTHLA~AIg~~a~ 126 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 6089989999878899999999999
No 131
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.11 E-value=0.15 Score=29.41 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=7.1
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 67997785433434333
Q gi|254780952|r 473 GQFRPQIRQSLQNFVKD 489 (685)
Q Consensus 473 ~~~~~~~~~~l~~~~~~ 489 (685)
..+...+.+.|+.|.+.
T Consensus 387 DtyRiga~eQL~~y~~i 403 (557)
T PRK12727 387 DTQRVGGREQLHSYGRQ 403 (557)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 66408799999999998
No 132
>pfam10412 TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Probab=95.10 E-value=0.033 Score=33.94 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=26.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 8989669995889883589999999999808999788676211
Q gi|254780952|r 41 PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 41 ~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
....|++|+|++|||||..+..-+..++..+ +.++++=.
T Consensus 13 ~~~~H~lviG~tGsGKT~~i~~~i~~~~~~~----~s~iv~Dp 51 (386)
T pfam10412 13 SETQHILIVGTTGTGKTQALRELLDQIRARG----DRAIIYDP 51 (386)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCC----CCEEEEEC
T ss_conf 7767589988999988879999999999779----91999958
No 133
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.09 E-value=0.15 Score=29.32 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 29988999985389896699958898835899999999998089
Q gi|254780952|r 29 GLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKE 72 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~ 72 (685)
.-+.+||++..-+.+.-+-+++=+|||||+ |+..+...|...+
T Consensus 10 ~v~~~~r~~~~~~kg~viWlTGLSGSGKTT-lA~~L~~~L~~~~ 52 (198)
T PRK03846 10 PVTKAQREQLHGHKGVVLWFTGLSGSGKST-VAGALEEALHELG 52 (198)
T ss_pred CCCHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCC
T ss_conf 879999999868998699987999998899-9999999999759
No 134
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.08 E-value=0.059 Score=32.18 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=35.4
Q ss_pred CCCEEEE-ECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHH
Q ss_conf 8966999-5889883589999999999808999788676211479999999999985
Q gi|254780952|r 43 DTPLLIL-AGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACY 98 (685)
Q Consensus 43 ~~~~lV~-AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~ 98 (685)
.|.+.|+ |.||+|||+.+.+-+.++..+.+ .+++.+|+ .-...++..|+...
T Consensus 18 ~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g---~~Vl~~sl-Em~~~~~~~R~~a~ 70 (186)
T pfam03796 18 KGDLIIIAARPSMGKTAFALNIARNAALKQD---KPVLFFSL-EMSAEQLAERLLSS 70 (186)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEECC-CCCHHHHHHHHHHH
T ss_conf 8817999967999879999999999999709---96687547-55299999999998
No 135
>pfam05876 Terminase_GpA Phage terminase large subunit (GpA). This family consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities.
Probab=95.06 E-value=0.16 Score=29.12 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=51.5
Q ss_pred HCCCHHHHHHHHCCCC---CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHH-HHHHHHHC
Q ss_conf 6299889999853898---966999588988358999999999980899978867621147999999-99999851
Q gi|254780952|r 28 KGLNAQQTHAVTIPDD---TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEM-KNRLACYL 99 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~---~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el-~~Ri~~~l 99 (685)
...+|-|++...+-.+ ..+.|..+|-+|||.++..-+.|.+.+ +|..||++.-|..+|+++ ++||.-++
T Consensus 15 ~~~~Py~~eimd~l~~~~v~~V~~~k~aQ~GkT~~~~n~igy~i~~---~P~p~l~v~Pt~~~a~~~s~~rl~Pmi 87 (552)
T pfam05876 15 TDRTPYLREIMDALSPPSVERVVFMKSAQVGKTELLLNWIGYFIDH---DPAPMLVVQPTDDDAKRFSKDRLDPMI 87 (552)
T ss_pred CCCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 8888076999985488784499999578703889999999886630---898879994189999999999899998
No 136
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=95.00 E-value=0.18 Score=28.93 Aligned_cols=52 Identities=15% Similarity=0.401 Sum_probs=39.1
Q ss_pred CCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEE--CCCHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 15531000000001366653113653031110--1001478899875202332032033
Q gi|254780952|r 349 SQSDNSELSTIIQEIINIQNTGMSLNNIAILV--RTSWQTRKFEDAFLEQEIPHKVIGG 405 (685)
Q Consensus 349 ~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~--Rtn~~~~~l~~~L~~~gIP~~~~g~ 405 (685)
+.+..+-...|+++|.+++..|-| ||+ ++-..+..++..|.+.|||+.+...
T Consensus 409 y~t~~~K~~ai~~ei~~~~~~gqP-----vLvGT~sve~SE~ls~~L~~~~i~h~vLNA 462 (833)
T PRK12904 409 YKTEKEKFDAVVEDIKERHKKGQP-----VLVGTTSIEKSELLSKLLKKAGIPHNVLNA 462 (833)
T ss_pred ECCHHHHHHHHHHHHHHHHHCCCC-----EEEECCCHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 079999999999999999976997-----899427479899999999873782776177
No 137
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.97 E-value=0.084 Score=31.12 Aligned_cols=96 Identities=17% Similarity=0.330 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCHHHHH--HCC---CHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHH
Q ss_conf 2321136832158887--629---98899998538989669995889883589999999999808999788676211479
Q gi|254780952|r 12 HILKGDFVPSCVPNYL--KGL---NAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQ 86 (685)
Q Consensus 12 ~~~~~~~~~~~~~~~l--~~L---n~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~ 86 (685)
-++-.-+=|.++.++. +.| +.-=+.+|....=..++.-++||||||+ +|++|.+.- ..+..-+.=+..
T Consensus 16 aPLA~rmRP~~Lde~vGQ~hllg~g~~Lrr~i~~~~~~S~Il~GPPGtGKTT-----LA~iIA~~t--~~~F~~lsAv~s 88 (726)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTT-----LARIIANHT--RAHFSSLNAVLA 88 (726)
T ss_pred CCCHHHHCCCCHHHHCCCHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCHHH-----HHHHHHHHH--CCCEEEEECCCC
T ss_conf 9856862999877735957542898289999976999827888979999999-----999998874--886799856203
Q ss_pred HHHHHHHHHHH---HC---CC-CCCEEEEHHHHHH
Q ss_conf 99999999998---51---64-5878961789999
Q gi|254780952|r 87 AIQEMKNRLAC---YL---GE-KIPRIQTFHSFCA 114 (685)
Q Consensus 87 AA~el~~Ri~~---~l---~~-~~~~i~T~Hsf~~ 114 (685)
-.+++|+-+.. .+ |. ....|--||-|-.
T Consensus 89 gvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK 123 (726)
T PRK13341 89 GVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNK 123 (726)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCH
T ss_conf 77999999999999987459965999862542588
No 138
>PRK06921 hypothetical protein; Provisional
Probab=94.97 E-value=0.12 Score=30.15 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=8.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 69995889883589999999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
++..+.||+|||+..+.-+..|+
T Consensus 119 l~f~G~~G~GKThLa~aIa~~Ll 141 (265)
T PRK06921 119 IALLGQPGSGKTHLLTAAANELM 141 (265)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 79972898988999999999999
No 139
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.94 E-value=0.077 Score=31.39 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=34.5
Q ss_pred CCCEE-EEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHH
Q ss_conf 89669-995889883589999999999808999788676211479999999999985
Q gi|254780952|r 43 DTPLL-ILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACY 98 (685)
Q Consensus 43 ~~~~l-V~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~ 98 (685)
.|.+. |.|+||+|||+.+.+-+.++..+.| .+++.+|+ .-...++..|+.+.
T Consensus 12 ~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g---~~V~~~Sl-Em~~~~~~~R~~s~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQG---KPVLFFSL-EMSKEQLLQRLLAS 64 (242)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEEEC-CCCHHHHHHHHHHH
T ss_conf 9818999968999999999999999999779---95999933-35388999999999
No 140
>PRK07261 topology modulation protein; Provisional
Probab=94.94 E-value=0.03 Score=34.18 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=38.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCH---HHEEEE-EECHHHHHHHHHHHHHHCCCCCCEE--EEHHHH
Q ss_conf 699958898835899999999998089997---886762-1147999999999998516458789--617899
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPP---SKILAM-TFTNQAIQEMKNRLACYLGEKIPRI--QTFHSF 112 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p---~~Il~i-TFT~~AA~el~~Ri~~~l~~~~~~i--~T~Hsf 112 (685)
++|++++|||||| |+.+++..+ +++. ++|--. -.+.....|..+++...+..+. +| |++.+.
T Consensus 3 I~IiG~sGsGKST-lAr~L~~~~---~ip~~~LD~l~w~p~w~~~~~~e~~~~~~~~~~~~~-WIiDGny~~~ 70 (171)
T PRK07261 3 IAIIGYSGSGKST-LARFLGQHY---NCPVLHLDQLHFSSNWQERDDDDMIADISNFLLKQD-WIIEGNYSNC 70 (171)
T ss_pred EEEECCCCCCHHH-HHHHHHHHH---CCCEEEECCEEECCCCEECCHHHHHHHHHHHHHCCC-EEEECCCCCH
T ss_conf 9998899986899-999999987---979797022788899988889999999999984898-7994785124
No 141
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=94.92 E-value=0.076 Score=31.41 Aligned_cols=63 Identities=30% Similarity=0.344 Sum_probs=46.5
Q ss_pred EEEEECCCCCHHHHHHHHHHH---HHHCCCCCHHHEEEEEECHHHHHHHHHHHHH----HCCCCCCEEEEHHH
Q ss_conf 699958898835899999999---9980899978867621147999999999998----51645878961789
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLH---LICHKEIPPSKILAMTFTNQAIQEMKNRLAC----YLGEKIPRIQTFHS 111 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~---Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~----~l~~~~~~i~T~Hs 111 (685)
++|.|+-|+|||++-..-..+ ++++. .-.+|..+--|+..++.|.+|+.+ .+|... .++-.||
T Consensus 2 ~v~~APTG~GKTe~aL~~A~~sah~~k~~--~~~~~I~alP~r~~~na~~~r~~~sash~Fg~P~-~~~~~~s 71 (424)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALKSAHLIKKQ--KADKVIFALPTRVTINAMYRRLKESASHLFGSPE-LVLLLHS 71 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHH--HHCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCC
T ss_conf 68861789987899999998636664224--4401012202688899999999986775417854-3233455
No 142
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=94.91 E-value=0.14 Score=29.66 Aligned_cols=70 Identities=20% Similarity=0.135 Sum_probs=45.7
Q ss_pred CCHHHHHHHHCCCC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH-EEEEEECHHHHHHHHHHHHHHC
Q ss_conf 99889999853898-9669995889883589999999999808999788-6762114799999999999851
Q gi|254780952|r 30 LNAQQTHAVTIPDD-TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSK-ILAMTFTNQAIQEMKNRLACYL 99 (685)
Q Consensus 30 Ln~~Q~~av~~~~~-~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~-Il~iTFT~~AA~el~~Ri~~~l 99 (685)
.++=|.+++-.-.. .-+++.|--|||||....-=+...+....-.+.. .|+++-||-.|..+.+-+..+.
T Consensus 52 pt~IQ~~~iP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~ 123 (513)
T COG0513 52 PTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLG 123 (513)
T ss_pred CCHHHHHHCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHH
T ss_conf 898999658776369997998689871789999999999740045577756997799999999999999998
No 143
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.88 E-value=0.07 Score=31.66 Aligned_cols=43 Identities=23% Similarity=0.235 Sum_probs=28.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHH
Q ss_conf 89896699958898835899999999998089997886762114799
Q gi|254780952|r 41 PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQA 87 (685)
Q Consensus 41 ~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~A 87 (685)
+.+..++|.+.||||||....+-+...+.+ | ++.+.+||....
T Consensus 30 p~g~~~li~G~~G~GKt~~~~~f~~~~~~~-g---~~~~~~~~ee~~ 72 (241)
T PRK06067 30 PFGSLILIEGENDTGKSVLSQQFVWGALNQ-G---KRGLAITTENTS 72 (241)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC-C---CEEEEEEECCCH
T ss_conf 799089998079988799999999999867-9---829999942899
No 144
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=94.85 E-value=0.028 Score=34.38 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=4.6
Q ss_pred HHHHCCCCCHHHE
Q ss_conf 9998089997886
Q gi|254780952|r 66 HLICHKEIPPSKI 78 (685)
Q Consensus 66 ~Ll~~~~~~p~~I 78 (685)
+|++++-+++..|
T Consensus 36 ~L~~~~~l~~~~l 48 (577)
T TIGR02538 36 YLIQNGLLDAKQL 48 (577)
T ss_pred HHHHHCCCCHHHH
T ss_conf 9986147788999
No 145
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=94.78 E-value=0.11 Score=30.33 Aligned_cols=46 Identities=24% Similarity=0.251 Sum_probs=32.7
Q ss_pred EEEECCCCCHHHH-HHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHH
Q ss_conf 9995889883589-9999999998089997886762114799999999999
Q gi|254780952|r 47 LILAGAGTGKTTV-LIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLA 96 (685)
Q Consensus 47 lV~AgaGsGKT~~-L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~ 96 (685)
++-.-||+|||+. |-+-+..-+.. --+.|+++-||-.+.||.+-+.
T Consensus 6 ~ld~HPGaGKTr~vLP~~v~~~i~~----~lRtlVLaPTRVV~~Em~eAL~ 52 (146)
T pfam07652 6 VLDLHPGAGKTRKVLPELVRECIDR----RLRTLVLAPTRVVLAEMEEALR 52 (146)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHC
T ss_conf 9853899997022489999999972----8618997727999999999975
No 146
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI; InterPro: IPR014129 This entry represents TraI, which is a component of the relaxosome complex. In the process of conjugative plasmid transfer the relaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein ..
Probab=94.74 E-value=0.028 Score=34.40 Aligned_cols=70 Identities=24% Similarity=0.298 Sum_probs=52.1
Q ss_pred HHHHCCCHHHHHHHHCC---CCCCEEEEECCCCCHHHHHHH----HHHHHHHCCCCCHHHEEEEEECHHHHHHHHHH
Q ss_conf 88762998899998538---989669995889883589999----99999980899978867621147999999999
Q gi|254780952|r 25 NYLKGLNAQQTHAVTIP---DDTPLLILAGAGTGKTTVLIA----RMLHLICHKEIPPSKILAMTFTNQAIQEMKNR 94 (685)
Q Consensus 25 ~~l~~Ln~~Q~~av~~~---~~~~~lV~AgaGsGKT~~L~~----ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~R 94 (685)
++.+.|+.-|+.||..- .+.=++|.+-||.|||+-|.. ++..........+.+|+.|.-|-+|..||+..
T Consensus 1127 ~~~~~lT~Gqk~a~~li~~T~DrFv~~QGlAGvGK~T~~~sr~l~~~~~~~~~~~~~~~~~iGLAPTH~AV~El~~~ 1203 (2193)
T TIGR02760 1127 ELLETLTHGQKQAIHLIVSTKDRFVAVQGLAGVGKTTMLESRDLEVVKAVKQAAESEQLQVIGLAPTHEAVGELKAA 1203 (2193)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 45355335667886410002362689821137782676553150467888873046886575137751677888860
No 147
>KOG0731 consensus
Probab=94.72 E-value=0.053 Score=32.48 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=22.4
Q ss_pred HHCCCCCHHHHEECCCHHHH-HHHHHH-HCCCCCEEEECCC-CCCC------CCCHHHHHHHH
Q ss_conf 31136530311101001478-899875-2023320320331-0001------12102899999
Q gi|254780952|r 368 NTGMSLNNIAILVRTSWQTR-KFEDAF-LEQEIPHKVIGGS-FYDR------QEIRDALAYFR 421 (685)
Q Consensus 368 ~~g~~~~diAVL~Rtn~~~~-~l~~~L-~~~gIP~~~~g~~-~f~~------~eV~~lla~Lr 421 (685)
+-|.....=|+|+---.... -++.+. -++|+||-...|+ |.+. .-|+++...-|
T Consensus 338 ~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar 400 (774)
T KOG0731 338 ELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR 400 (774)
T ss_pred HCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 747767675178789998678999988530589646413378888760343488899998743
No 148
>PRK04328 hypothetical protein; Provisional
Probab=94.72 E-value=0.075 Score=31.45 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=31.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHH
Q ss_conf 989669995889883589999999999808999788676211479999999999
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRL 95 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri 95 (685)
.+..++|.++||||||.-..+-+.+-+.+ -++.+.+||..... ++.++.
T Consensus 23 ~gs~~Lv~G~pGtGKT~la~qFl~~g~~~----GE~~lyis~eE~~~-~l~~~~ 71 (250)
T PRK04328 23 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGIYVALEEHPV-QVRRNM 71 (250)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHC----CCCEEEEEEECCHH-HHHHHH
T ss_conf 99699998289999899999999999876----99779999727999-999999
No 149
>KOG0951 consensus
Probab=94.67 E-value=0.32 Score=27.14 Aligned_cols=73 Identities=27% Similarity=0.388 Sum_probs=52.5
Q ss_pred HCCCHHHHHHHH---CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-------CCHHHEEEEEECHHHHHHHHHHHHH
Q ss_conf 629988999985---389896699958898835899999999998089-------9978867621147999999999998
Q gi|254780952|r 28 KGLNAQQTHAVT---IPDDTPLLILAGAGTGKTTVLIARMLHLICHKE-------IPPSKILAMTFTNQAIQEMKNRLAC 97 (685)
Q Consensus 28 ~~Ln~~Q~~av~---~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~-------~~p~~Il~iTFT~~AA~el~~Ri~~ 97 (685)
..||+.|-. |. ...+.++++-|++|+|||-+-+--+..-+..+. ..|.+|.-+.-+++-++||-.-+.+
T Consensus 308 ~sLNrIQS~-V~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLVqE~VgsfSk 386 (1674)
T KOG0951 308 QSLNRIQSK-VYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSK 386 (1674)
T ss_pred HHHHHHHHH-HHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEEHHHHHHHHHHHHHH
T ss_conf 456678877-7788755767378742678882379999999998535454454102561379984289999999988886
Q ss_pred HCCC
Q ss_conf 5164
Q gi|254780952|r 98 YLGE 101 (685)
Q Consensus 98 ~l~~ 101 (685)
++..
T Consensus 387 Rla~ 390 (1674)
T KOG0951 387 RLAP 390 (1674)
T ss_pred HCCC
T ss_conf 4235
No 150
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.64 E-value=0.09 Score=30.91 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999998499848
Q gi|254780952|r 112 FCASILRKHGEVVG 125 (685)
Q Consensus 112 f~~~il~~~~~~~g 125 (685)
||+++|-+.....|
T Consensus 40 la~QfL~~Ga~~~G 53 (501)
T PRK09302 40 FALQFLHNGIKSFG 53 (501)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999988559
No 151
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=94.53 E-value=0.041 Score=33.28 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=22.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 669995889883589999999999808999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIP 74 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~ 74 (685)
.++|++.||+|||| |+.|++..+.+.+++
T Consensus 1 ki~ITG~pGvGKTT-li~kv~~~l~~~~~~ 29 (168)
T pfam03266 1 RIFITGPPGVGKTT-LVKKVIELLKSEGVK 29 (168)
T ss_pred CEEEECCCCCCHHH-HHHHHHHHHHHCCCE
T ss_conf 98997899988999-999999999867970
No 152
>KOG0920 consensus
Probab=94.47 E-value=0.18 Score=28.92 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=46.5
Q ss_pred HHHHHHHHCCCCCCEEEE-ECCCCCHHHHHHHHHH-HHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 889999853898966999-5889883589999999-999808999788676211479999999999985164
Q gi|254780952|r 32 AQQTHAVTIPDDTPLLIL-AGAGTGKTTVLIARML-HLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE 101 (685)
Q Consensus 32 ~~Q~~av~~~~~~~~lV~-AgaGsGKT~~L~~ri~-~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~ 101 (685)
..+++.+.+-...+++|+ +..|+|||+-+.+.|. ..+.+ + ++.+|+|.---|-||-.+.+|+..-.++
T Consensus 176 ~~r~~Il~~i~~~qVvvIsGeTGcGKtTQvpQfiLd~~~~~-~-~~~~IicTQPRRIsAIsvAeRVa~ER~~ 245 (924)
T KOG0920 176 KMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES-G-AACNIICTQPRRISAISVAERVAKERGE 245 (924)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCCEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 78999999997496699957889871224669999999862-8-9973886677517789999999887546
No 153
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=94.46 E-value=0.028 Score=34.38 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=10.9
Q ss_pred EEEEECCCCCHHHH
Q ss_conf 69995889883589
Q gi|254780952|r 46 LLILAGAGTGKTTV 59 (685)
Q Consensus 46 ~lV~AgaGsGKT~~ 59 (685)
+.|.+.|||||||+
T Consensus 3 I~ISGpPGSGktTv 16 (173)
T TIGR02173 3 ITISGPPGSGKTTV 16 (173)
T ss_pred EEEECCCCCCHHHH
T ss_conf 88735896864789
No 154
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.45 E-value=0.074 Score=31.50 Aligned_cols=52 Identities=29% Similarity=0.319 Sum_probs=29.8
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE---CHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 995889883589999999999808999788676211---4799999999999851645878961
Q gi|254780952|r 48 ILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF---TNQAIQEMKNRLACYLGEKIPRIQT 108 (685)
Q Consensus 48 V~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF---T~~AA~el~~Ri~~~l~~~~~~i~T 108 (685)
|-+.||||||+.|.+-+..|..+ -+|.++|+ |+.=| +|+.+..+.....|.|
T Consensus 18 v~Gp~GSGKTaLie~~~~~L~~~-----~~~aVI~~Di~t~~Da----~~l~~~~g~~i~~v~T 72 (202)
T COG0378 18 VGGPPGSGKTALIEKTLRALKDE-----YKIAVITGDIYTKEDA----DRLRKLPGEPIIGVET 72 (202)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHH-----CCEEEEECEEECHHHH----HHHHHCCCCEEEEECC
T ss_conf 61799867899999999999752-----7768996404006559----9997377980687403
No 155
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.43 E-value=0.042 Score=33.22 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=22.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 669995889883589999999999808999788676211
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
|++|+|++|||||+.++ +-.|+.. ++.++++..
T Consensus 1 H~lvig~tGsGKt~~~v--ip~ll~~----~~s~vv~D~ 33 (384)
T cd01126 1 HVLVFAPTRSGKGVGFV--IPNLLTW----PGSVVVLDP 33 (384)
T ss_pred CEEEECCCCCCHHHHHH--HHHHHHC----CCCEEEEEC
T ss_conf 97998899997318999--9999818----998899948
No 156
>PRK08118 topology modulation protein; Reviewed
Probab=94.40 E-value=0.04 Score=33.30 Aligned_cols=66 Identities=12% Similarity=0.177 Sum_probs=37.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE-ECHHHHHHHHHHHHHHCCCCCCEE--EEHHHH
Q ss_conf 66999588988358999999999980899978867621-147999999999998516458789--617899
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT-FTNQAIQEMKNRLACYLGEKIPRI--QTFHSF 112 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT-FT~~AA~el~~Ri~~~l~~~~~~i--~T~Hsf 112 (685)
.++|++++|||||| |+.+++..+.-.-++-++|.-.. .+.....|+.+++...+..+ .+| |++.+.
T Consensus 3 rI~IiG~~GsGKST-lAr~L~~~~~ip~~~LD~l~w~~~w~~~~~~e~~~~~~~~~~~~-~WIidGny~~~ 71 (167)
T PRK08118 3 KIILIGSGGSGKST-LARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQRTVQNELVKED-EWIIDGNYGGT 71 (167)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHHCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCHHH
T ss_conf 79998899987999-99999998896979644347668994688899999999998389-87994771779
No 157
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=94.40 E-value=0.059 Score=32.18 Aligned_cols=153 Identities=20% Similarity=0.260 Sum_probs=81.9
Q ss_pred CC-EEEEECCCCCHHHHHHHHHHHHHHCCCC--CHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHH
Q ss_conf 96-6999588988358999999999980899--97886762114799999999999851645878961789999999984
Q gi|254780952|r 44 TP-LLILAGAGTGKTTVLIARMLHLICHKEI--PPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQTFHSFCASILRKH 120 (685)
Q Consensus 44 ~~-~lV~AgaGsGKT~~L~~ri~~Ll~~~~~--~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~T~Hsf~~~il~~~ 120 (685)
|- +-|.++-||||||.|- -++.... .|+ .|. +..|==.+.-+.+|+.+ .+.+..+...|+|+=. ++
T Consensus 58 GeLlA~mGsSGAGKTTLmn-~La~R~~-~g~~~~g~-~v~lNG~~~~~~~~~~~-saYvqQ~Dlf~~~LTv------~E- 126 (671)
T TIGR00955 58 GELLAIMGSSGAGKTTLMN-ALAFRSP-KGLKVSGS-VVLLNGRPIDAKEMRAI-SAYVQQDDLFIPTLTV------RE- 126 (671)
T ss_pred CEEEEEECCCCCCHHHHHH-HHHCCCC-CCCEECCC-EEEECCEECCHHHHHHH-HCHHEEHHHCCCCCCH------HE-
T ss_conf 7068984787662689999-9853374-78614683-67875837586899854-0122011004885103------00-
Q ss_pred HHHCCCCCCCC----CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC-CHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99848798980----728999999999999973998547898999999866754158-9646121146538999999999
Q gi|254780952|r 121 GEVVGLPTDFA----ILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGW-NPKDIPQSSLTEDAEIPKAIYI 195 (685)
Q Consensus 121 ~~~~g~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~-~~~~~~~~~~~~~~~~~~~iy~ 195 (685)
.+-+...++ +...++++..++++++++++.+- .+..+ .|.+.+-.+..++.+
T Consensus 127 --~L~f~A~lRm~~~~~~~~~k~~rV~~vl~~l~L~~c--------------a~T~IG~pg~~KGlSGGErKR------- 183 (671)
T TIGR00955 127 --HLMFQAHLRMKRRVTKKHEKRERVDEVLQALGLRKC--------------ADTRIGIPGRVKGLSGGERKR------- 183 (671)
T ss_pred --EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHH--------------HCCCCCCCCCEEEECCCHHHH-------
T ss_conf --001012233476676057999999999986042112--------------113437999645520113678-------
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHH-------HHHHHHHHCCC
Q ss_conf 75577775300111000124543012068897401221025321077511346-------88787751111
Q gi|254780952|r 196 QYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDEYQDINTPQ-------YLLLRLLCQKE 259 (685)
Q Consensus 196 ~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~r~~~ilVDEfQDtn~~Q-------~~ll~~L~~~~ 259 (685)
|..|.++|.+|.+ +|+|| =||.+- .++|+.||.+.
T Consensus 184 -----------------LafA~E~ltdP~~----------LFcDE--PTSGLDSfmA~~Vv~~L~~LA~~G 225 (671)
T TIGR00955 184 -----------------LAFASELLTDPII----------LFCDE--PTSGLDSFMAYSVVQVLKGLAQKG 225 (671)
T ss_pred -----------------HHHHHHHHHCCCE----------EEECC--CCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf -----------------9988788718942----------65038--895345999999999999985089
No 158
>PRK13768 GTPase; Provisional
Probab=94.34 E-value=0.05 Score=32.65 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=17.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6699958898835899999999998089
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKE 72 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~ 72 (685)
-++|++.||||||| ++++...-+...+
T Consensus 4 ~~~ViGpaGSGKsT-~~~~l~~~l~~~~ 30 (253)
T PRK13768 4 IVFFLGTAGSGKTT-LVGALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHHHHCC
T ss_conf 89998999998899-9999999999769
No 159
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.33 E-value=0.11 Score=30.31 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=30.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHH
Q ss_conf 699958898835899999999998089997886762114799999999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLA 96 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~ 96 (685)
++|.++||+|||+.+.+-+..... ...+++.+..-. ...|+++|+.
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~----~~~~~~~~~~ee-~~~q~~~~~~ 47 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT----KGGKVVYVDIEE-EIEELTERLI 47 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----CCCEEEEEECCC-CHHHHHHHHH
T ss_conf 899989999899999999999876----399799998666-4489999999
No 160
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.32 E-value=0.055 Score=32.38 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=5.8
Q ss_pred EEEEECCCCCHHH
Q ss_conf 6999588988358
Q gi|254780952|r 46 LLILAGAGTGKTT 58 (685)
Q Consensus 46 ~lV~AgaGsGKT~ 58 (685)
++..++||||||+
T Consensus 99 LlF~G~~GTGKTh 111 (242)
T PRK07952 99 FIFSGKPGTGKNH 111 (242)
T ss_pred EEEECCCCCCHHH
T ss_conf 7997899997899
No 161
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.047 Score=32.85 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=25.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEE
Q ss_conf 669995889883589999999999808999788676
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILA 80 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~ 80 (685)
.+.|++.||+|||+ |+.|++..|.+.|..-..+++
T Consensus 7 ki~ITG~PGvGKtT-l~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 7 KIFITGRPGVGKTT-LVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHHHHCCCEEEEEEE
T ss_conf 99986799845899-999999999855966513983
No 162
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=94.31 E-value=0.061 Score=32.09 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89669995889883589999999999808
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLHLICHK 71 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~ 71 (685)
..|++|+|++|||||+++..-+...+..+
T Consensus 42 ~~H~lv~G~tGsGKT~~i~~li~~~~~rg 70 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRELLASIRARG 70 (410)
T ss_pred HCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 27479988999988999999999999869
No 163
>CHL00181 cbbX CbbX; Provisional
Probab=94.30 E-value=0.061 Score=32.06 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH-EEEE
Q ss_conf 9669995889883589999999999808999788-6762
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSK-ILAM 81 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~-Il~i 81 (685)
-|++..+.||||||++ +.-++.++..-|+-+.. +..+
T Consensus 60 ~h~vF~GnPGTGKTTV-ARl~a~il~~lG~L~~g~vve~ 97 (287)
T CHL00181 60 LHMSFTGSPGTGKTTV-ALKMADILYRLGYIKKGHLITV 97 (287)
T ss_pred CEEEEECCCCCCHHHH-HHHHHHHHHHCCCCCCCEEEEE
T ss_conf 5388878998679999-9999999998699558958995
No 164
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.29 E-value=0.07 Score=31.65 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=19.3
Q ss_pred HHHHHHCCCCEEHHHHHHHHHHHH---HHHHHHH
Q ss_conf 688974012210253210775113---4688787
Q gi|254780952|r 223 PHVLKKYHEKIPYIMVDEYQDINT---PQYLLLR 253 (685)
Q Consensus 223 ~~v~~~~~~r~~~ilVDEfQDtn~---~Q~~ll~ 253 (685)
.++++.|++ .+.++||..|-... .|.+++.
T Consensus 200 ~~Fr~~yr~-~DvLliDDiqfl~gk~~tqeeff~ 232 (447)
T PRK00149 200 EEFKEKYRS-VDVLLIDDIQFLAGKEKTQEEFFH 232 (447)
T ss_pred HHHHHHHHC-CCEEEECHHHHHHCCHHHHHHHHH
T ss_conf 999999972-885432148886055779999999
No 165
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.28 E-value=0.049 Score=32.72 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=27.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEEC
Q ss_conf 9896699958898835899999999998089997886762114
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFT 84 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT 84 (685)
.++|+++.+.||+|||. |+..++..+ +.+..+|.|..++
T Consensus 42 ~~~~vll~G~PG~gKT~-la~~lA~~l---~~~~~~i~~t~~l 80 (329)
T COG0714 42 AGGHVLLEGPPGVGKTL-LARALARAL---GLPFVRIQCTPDL 80 (329)
T ss_pred CCCCEEEECCCCCCHHH-HHHHHHHHH---CCCCEEEECCCCC
T ss_conf 59977877989877799-999999983---8981899568998
No 166
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.27 E-value=0.071 Score=31.62 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=25.2
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9958898835899999999998089997886762114799999999999851645878961
Q gi|254780952|r 48 ILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQT 108 (685)
Q Consensus 48 V~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~T 108 (685)
+..+||||||+.|..-|..| .. . -+|.+|.= .-++..=.+||++ .|..+.+|.|
T Consensus 109 l~sSPGSGKTtLLe~ti~~L-~~-~---~~~aVIeG-D~~T~~DA~RI~~-~Gv~avQInT 162 (290)
T PRK10463 109 LVSSPGSGKTTLLTETLMRL-KD-S---VPCAVIEG-DQQTVNDAARIRA-TGTPAIQVNT 162 (290)
T ss_pred ECCCCCCCHHHHHHHHHHHH-HC-C---CCEEEEEE-CCCCHHHHHHHHH-CCCCEEEECC
T ss_conf 30699878899999999987-33-6---75799960-4235667999997-6995899547
No 167
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.24 E-value=0.26 Score=27.72 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=6.7
Q ss_pred CEEHHHHHHHHHH
Q ss_conf 2102532107751
Q gi|254780952|r 232 KIPYIMVDEYQDI 244 (685)
Q Consensus 232 r~~~ilVDEfQDt 244 (685)
.++.++||..|-.
T Consensus 175 ~~dlllIDDiq~l 187 (408)
T COG0593 175 SLDLLLIDDIQFL 187 (408)
T ss_pred CCCEEEECHHHHH
T ss_conf 2673555138675
No 168
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.23 E-value=0.31 Score=27.26 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=37.7
Q ss_pred CCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 74488731553100000000136665311365303111010014788998752023320320
Q gi|254780952|r 342 AKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVI 403 (685)
Q Consensus 342 ~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~ 403 (685)
+.+.+....+ +...+..+|+.....|-. +-|.+=|.+.+..|.++|...||-++..
T Consensus 421 P~ievrp~~~---Qiddl~~ei~~~~~~~er---~LvttlTkkmaEdLt~yl~~~~ik~~Yl 476 (657)
T PRK05298 421 PEIEVRPTKG---QVDDLLSEIRKRVAKGER---VLVTTLTKRMAEDLTDYLKELGIKVRYL 476 (657)
T ss_pred CCEEEECCCC---CHHHHHHHHHHHHHCCCE---EEEEECHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8459964878---799999999999636976---9999545989999999999679807996
No 169
>PRK06696 uridine kinase; Validated
Probab=94.21 E-value=0.11 Score=30.37 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=22.8
Q ss_pred CCCCCCEEE--EECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 389896699--9588988358999999999980899
Q gi|254780952|r 40 IPDDTPLLI--LAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 40 ~~~~~~~lV--~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
...+.|++| -+++|||||+ |+.+++..+...|.
T Consensus 21 ~~p~rpl~VgIdG~~gSGKTT-lA~~La~~L~~~G~ 55 (227)
T PRK06696 21 LNLTRPLRVAIDGITASGKTT-FANELAEEIKKRGR 55 (227)
T ss_pred CCCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCC
T ss_conf 599986899977899878799-99999999974699
No 170
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.17 E-value=0.13 Score=29.80 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=30.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHH
Q ss_conf 89896699958898835899999999998089997886762114799999999
Q gi|254780952|r 41 PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKN 93 (685)
Q Consensus 41 ~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~ 93 (685)
+.++.++|.++||||||.-..+-+...+.+ -+.++.+|+...+ .++.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~----ge~vlyvs~~e~~-~~l~~ 68 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE----GEPVLYVSTEESP-EELLE 68 (260)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHC----CCEEEEEEEECCH-HHHHH
T ss_conf 899789999389986899999999977626----9858999920698-99999
No 171
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.17 E-value=0.27 Score=27.63 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEEC
Q ss_conf 36832158887629988999985389896699958898835899999999998089997886762114
Q gi|254780952|r 17 DFVPSCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFT 84 (685)
Q Consensus 17 ~~~~~~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT 84 (685)
+|++.+-......| + .++..+.+..+.+-+++|+|||+.|-. +.+-..+.+ .++..++..
T Consensus 23 nFi~g~n~~~~~al---~-~~~~~~~~~~l~l~G~~G~GKTHLLqA-~~~~~~~~~---~~~~yl~~~ 82 (235)
T PRK08084 23 SFYPGDNDSLLAAL---Q-NVLRQEHSGYIYLWGREGAGRSHLLHA-ACAELSQRG---DAVGYVPLD 82 (235)
T ss_pred CCCCCCCHHHHHHH---H-HHHHCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCCC---CCEEEEEHH
T ss_conf 23448869999999---9-998578987699989999888999999-999997079---857998779
No 172
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.13 E-value=0.44 Score=26.18 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=13.8
Q ss_pred EEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 6211479999999999985164587
Q gi|254780952|r 80 AMTFTNQAIQEMKNRLACYLGEKIP 104 (685)
Q Consensus 80 ~iTFT~~AA~el~~Ri~~~l~~~~~ 104 (685)
+-+|+-...+|.-+.|+..+|+++.
T Consensus 3 i~~f~a~s~~ea~~kIr~~lG~~Av 27 (407)
T COG1419 3 IKKFTAESMREAIEKIRKELGEDAV 27 (407)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCE
T ss_conf 6998616899999999998789818
No 173
>KOG0354 consensus
Probab=94.10 E-value=0.2 Score=28.47 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHC
Q ss_conf 29988999985389896699958898835899999999998089997886762114799999999999851
Q gi|254780952|r 29 GLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYL 99 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l 99 (685)
.|-+-|.+.|.-..+.+++|.++-|+|||++.+.-+..-++ ..+..+|+.++-|+--...-..+....+
T Consensus 62 ~lR~YQ~eivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~r--w~p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354 62 ELRNYQEELVQPALGKNTIIALPTGSGKTFIAAVIMKNHFE--WRPKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHCC
T ss_conf 56078999867862687699953599861047999999972--3776438996077117888898876206
No 174
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=94.08 E-value=0.034 Score=33.85 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=20.7
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 38989669995889883589999999999
Q gi|254780952|r 40 IPDDTPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 40 ~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
+..++|+++++.||+|||. |+.|+..++
T Consensus 19 aaG~H~lLl~GpPG~GKTm-lA~rl~~iL 46 (207)
T pfam01078 19 AAGGHNLLMIGPPGSGKTM-LAKRLPGIL 46 (207)
T ss_pred HCCCCCEEEECCCCCCHHH-HHHHHHCCC
T ss_conf 5478758978899802999-997630148
No 175
>CHL00176 ftsH cell division protein; Validated
Probab=94.08 E-value=0.061 Score=32.05 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=14.8
Q ss_pred HHHHHH-HHHHHHHHHHHHHEE
Q ss_conf 787899-999999985864116
Q gi|254780952|r 606 GNVEGE-RRLAYVGITRAKKKC 626 (685)
Q Consensus 606 ~~~eEE-rRL~YVA~TRAk~~L 626 (685)
..+++| ++++--+..||++-|
T Consensus 566 ~~ID~EV~~il~~ay~~A~~iL 587 (631)
T CHL00176 566 IRIDKEVRKIVHTCYDYAYQIL 587 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999
No 176
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.05 E-value=0.16 Score=29.18 Aligned_cols=58 Identities=19% Similarity=0.138 Sum_probs=36.1
Q ss_pred CHHHHHHHH-----CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCHHHEEEEEECHHHHHHHHHH
Q ss_conf 988999985-----38989669995889883589999999999808-99978867621147999999999
Q gi|254780952|r 31 NAQQTHAVT-----IPDDTPLLILAGAGTGKTTVLIARMLHLICHK-EIPPSKILAMTFTNQAIQEMKNR 94 (685)
Q Consensus 31 n~~Q~~av~-----~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~-~~~p~~Il~iTFT~~AA~el~~R 94 (685)
-++|.+-.. ...+++++|-||.|+|||. +||+-.- ....++|++-|-|..=-+.+-++
T Consensus 247 R~~Q~~Ma~~V~~al~~~~~l~IEAgTGtGKTl------aYLlPaia~~~~~~vVIST~T~~LQeQL~~k 310 (820)
T PRK07246 247 RPKQEQFAQLVDEDYHDGVASFIEAQTGIGKTY------GYLLPLLAQSDQNQIIVSVPTKLLQDQIMAG 310 (820)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH------HHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
T ss_conf 889999999999998058838998899964799------9999999843798399990869999999997
No 177
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=94.04 E-value=0.07 Score=31.65 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=19.6
Q ss_pred CCCCCEE--EEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8989669--9958898835899999999998089
Q gi|254780952|r 41 PDDTPLL--ILAGAGTGKTTVLIARMLHLICHKE 72 (685)
Q Consensus 41 ~~~~~~l--V~AgaGsGKT~~L~~ri~~Ll~~~~ 72 (685)
..+.+++ |.++||||||| ++..++..|...+
T Consensus 30 ~~~rR~lIgIaG~pGSGKST-lA~~l~~~L~~~~ 62 (230)
T PRK09270 30 EPQRRTVVGIAGPPGAGKST-LAETLWEALSQQG 62 (230)
T ss_pred CCCCEEEEEEECCCCCCHHH-HHHHHHHHHHHCC
T ss_conf 99971899998999889999-9999999986237
No 178
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.04 E-value=0.23 Score=28.12 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=4.3
Q ss_pred EEEEECCCCCHHH
Q ss_conf 6999588988358
Q gi|254780952|r 46 LLILAGAGTGKTT 58 (685)
Q Consensus 46 ~lV~AgaGsGKT~ 58 (685)
+++.++||+|||+
T Consensus 108 l~l~G~~G~GKth 120 (254)
T COG1484 108 LVLLGPPGVGKTH 120 (254)
T ss_pred EEEECCCCCCHHH
T ss_conf 8998999987999
No 179
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.00 E-value=0.05 Score=32.69 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=18.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 966999588988358999999999
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHL 67 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~L 67 (685)
|-++|.++.|||||+||..-+.++
T Consensus 2 GliLitG~TGSGKTTtl~all~~i 25 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 389998999997999999999853
No 180
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.027 Score=34.45 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=16.7
Q ss_pred EEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 67621147999999999998516
Q gi|254780952|r 78 ILAMTFTNQAIQEMKNRLACYLG 100 (685)
Q Consensus 78 Il~iTFT~~AA~el~~Ri~~~l~ 100 (685)
+-++-+-+.|.+|-++|+++.+.
T Consensus 18 ~~iVGL~d~av~EsreRVraal~ 40 (490)
T COG0606 18 FTIVGLPDTAVKESRERVRAALT 40 (490)
T ss_pred CEEEECCCHHHHHHHHHHHHHHH
T ss_conf 03640681778999999998987
No 181
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.97 E-value=0.11 Score=30.25 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 67514678752024443432010
Q gi|254780952|r 307 YRSTTHILNTANKLISHNKQRFD 329 (685)
Q Consensus 307 yRS~~~Ii~~an~li~~n~~r~~ 329 (685)
|.+...+...++.+..+--.+++
T Consensus 85 f~d~~~l~~ii~ria~~vgrriD 107 (355)
T COG4962 85 FLDEAALLRIIQRIAAAVGRRID 107 (355)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 48989999999999998588104
No 182
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=93.96 E-value=0.058 Score=32.22 Aligned_cols=49 Identities=37% Similarity=0.577 Sum_probs=38.0
Q ss_pred EEEEEECCCCCCCCCEEEECCCCCCCCCC-HHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECC
Q ss_conf 69996113455669836984685766842-212996787899999999985864116998313
Q gi|254780952|r 571 IQIMTLHAAKGLEFDTVFISGWEQGLLPH-QLSINEGNVEGERRLAYVGITRAKKKCHLFYTI 632 (685)
Q Consensus 571 V~i~TIH~SKGLEfd~V~i~gl~~g~~P~-~~~~~~~~~eEErRL~YVA~TRAk~~L~l~~~~ 632 (685)
-..||||||=|-|||+|+|+ +|. ...+ +|-|+|||+||||+.|.|.+..
T Consensus 622 ayA~TIHKsQGSef~~v~v~------l~~~~~~l-------~r~l~YtAiTRar~~l~l~~~~ 671 (696)
T COG0507 622 AYAMTIHKSQGSEFDRVIVL------LPSHSPML-------SRELLYTAITRARDRLILYGDE 671 (696)
T ss_pred EEEEEEECCCCCCCCEEEEE------CCCCCCCC-------CCCCEEEEEEEEEEEEEEECCH
T ss_conf 03567762577778638997------78986320-------2130013543000279997588
No 183
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.87 E-value=0.071 Score=31.64 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=23.4
Q ss_pred EEEEEECCCCCCCCCEEEEC-CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEE
Q ss_conf 69996113455669836984-685766842212996787899999999985864116998
Q gi|254780952|r 571 IQIMTLHAAKGLEFDTVFIS-GWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLF 629 (685)
Q Consensus 571 V~i~TIH~SKGLEfd~V~i~-gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~ 629 (685)
+++-.+-=-.|.-++..||+ +=.++.-|| -+-.-+|||=+.--|.
T Consensus 337 iev~alt~IRGRSl~~~FiIIDEaQNLTph--------------eikTiltR~G~GsKIV 382 (436)
T COG1875 337 IEVEALTYIRGRSLPDSFIIIDEAQNLTPH--------------ELKTILTRAGEGSKIV 382 (436)
T ss_pred EEEEEEEEECCCCCCCCEEEEEHHHCCCHH--------------HHHHHHHHHCCCCEEE
T ss_conf 256652013166555306997121217888--------------8899987606997799
No 184
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.86 E-value=0.057 Score=32.30 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=18.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 896699958898835899999999998
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLHLIC 69 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~Ll~ 69 (685)
..++++.++||||||+++.. +++.+.
T Consensus 2 ~~~ill~G~~GsGKTtl~~~-la~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELG 27 (148)
T ss_pred CCEEEEECCCCHHHHHHHHH-HHHHHC
T ss_conf 97899999997029999999-998726
No 185
>KOG0345 consensus
Probab=93.86 E-value=0.29 Score=27.47 Aligned_cols=70 Identities=19% Similarity=0.379 Sum_probs=49.3
Q ss_pred HCCCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCCCHHHE--EEEEECHHHHHHHHHHHHH
Q ss_conf 62998899998538-989669995889883589999999999--8089997886--7621147999999999998
Q gi|254780952|r 28 KGLNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARMLHLI--CHKEIPPSKI--LAMTFTNQAIQEMKNRLAC 97 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~~Ll--~~~~~~p~~I--l~iTFT~~AA~el~~Ri~~ 97 (685)
..+||=|-.+|-.- ...-|.|-|.-|||||-..+-=+...| .+...+|.+| |+||-||--|..+.+=+..
T Consensus 27 ~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~ 101 (567)
T KOG0345 27 EKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQP 101 (567)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 636877874667885278568985678871066899999999861157896512479965719999999999999
No 186
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=93.83 E-value=0.08 Score=31.28 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=12.8
Q ss_pred CCC--EEEEECCCCCHHHHHH
Q ss_conf 896--6999588988358999
Q gi|254780952|r 43 DTP--LLILAGAGTGKTTVLI 61 (685)
Q Consensus 43 ~~~--~lV~AgaGsGKT~~L~ 61 (685)
+.| +++-++||||||++.-
T Consensus 10 ~~Pkai~laG~pGAGKS~~~~ 30 (191)
T pfam06414 10 ERPVAVLLGGQPGAGKTELAR 30 (191)
T ss_pred CCCEEEEEECCCCCCHHHHHH
T ss_conf 698799995799888899999
No 187
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.83 E-value=0.15 Score=29.39 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=26.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEEC
Q ss_conf 9896699958898835899999999998089997886762114
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFT 84 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT 84 (685)
.+.-++|.+.||||||. +..+.+|=..+.| ++++.+|+-
T Consensus 23 ~gs~~li~G~~GtGKsi-~~~~~~~~~l~~g---~~~~yis~e 61 (230)
T PRK08533 23 FGSIILIEGDESTGKSI-LSQRLAYGFLQNG---YSVSYVSSQ 61 (230)
T ss_pred CCCEEEEECCCCCCHHH-HHHHHHHHHHHCC---CEEEEEEEC
T ss_conf 98489998689987899-9999999998789---869999943
No 188
>PRK13695 putative NTPase; Provisional
Probab=93.81 E-value=0.075 Score=31.46 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=21.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 66999588988358999999999980899
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
.+++++-||+|||| |+.|+..+|.+.+.
T Consensus 5 kI~iTG~PGvGKTT-li~Kv~~~L~~~g~ 32 (174)
T PRK13695 5 RIGITGMPGVGKTT-LVLKIAELLAREGY 32 (174)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHHHHCCC
T ss_conf 99987899988999-99999999863696
No 189
>PRK01184 hypothetical protein; Provisional
Probab=93.81 E-value=0.12 Score=30.04 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=27.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHH
Q ss_conf 6999588988358999999999980899978867621147999999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNR 94 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~R 94 (685)
+-++++||||||++ +.++.+.| +.++.+..-.+.++.+|
T Consensus 4 IGlTG~iGSGKstv-----a~i~~e~G-----~~vi~~~Divr~~v~~~ 42 (183)
T PRK01184 4 IIVTGMPGSGKGEF-----SKIARELG-----IPVVVMGDVIREEVKKR 42 (183)
T ss_pred EEEECCCCCCHHHH-----HHHHHHCC-----CEEEECCHHHHHHHHHC
T ss_conf 99968998878999-----99999779-----93998607789999983
No 190
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=93.77 E-value=0.07 Score=31.67 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=13.1
Q ss_pred CCEEEE-ECCCCCHHHHHH
Q ss_conf 966999-588988358999
Q gi|254780952|r 44 TPLLIL-AGAGTGKTTVLI 61 (685)
Q Consensus 44 ~~~lV~-AgaGsGKT~~L~ 61 (685)
..+||+ +.||||||+|+-
T Consensus 45 ~~iLlLtGPaG~GKTTTI~ 63 (490)
T pfam03215 45 QLILLLTGPSGCGKSTTVK 63 (490)
T ss_pred CEEEEEECCCCCCHHHHHH
T ss_conf 3189987989988999999
No 191
>PRK05595 replicative DNA helicase; Provisional
Probab=93.76 E-value=0.21 Score=28.40 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=15.8
Q ss_pred HHCCCCCHHHHEE-CC--CH--HHHHHHHH-HHCCCCCEE
Q ss_conf 3113653031110-10--01--47889987-520233203
Q gi|254780952|r 368 NTGMSLNNIAILV-RT--SW--QTRKFEDA-FLEQEIPHK 401 (685)
Q Consensus 368 ~~g~~~~diAVL~-Rt--n~--~~~~l~~~-L~~~gIP~~ 401 (685)
-.|..++++.|+. |. .+ .+..++.. -.+.|.|+-
T Consensus 195 t~Gl~~GdLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~ 234 (444)
T PRK05595 195 TSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVV 234 (444)
T ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 4599857779998579898079999999999986699379
No 192
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=93.76 E-value=0.15 Score=29.36 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=26.1
Q ss_pred CCCCCCCHHHHH--HCCCHHHHHHHHCCC-----CCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 136832158887--629988999985389-----8966999588988358999999999980
Q gi|254780952|r 16 GDFVPSCVPNYL--KGLNAQQTHAVTIPD-----DTPLLILAGAGTGKTTVLIARMLHLICH 70 (685)
Q Consensus 16 ~~~~~~~~~~~l--~~Ln~~Q~~av~~~~-----~~~~lV~AgaGsGKT~~L~~ri~~Ll~~ 70 (685)
+-+=|....++. +.|...-+.++.+.. =.|++.-++||+|||+ +|++|..
T Consensus 16 ~~lRP~~l~e~vGQehl~~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTT-----lAriiAk 72 (234)
T pfam05496 16 RSLRPRRLDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTT-----LANIIAN 72 (234)
T ss_pred HCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH-----HHHHHHH
T ss_conf 55498976660694999999999999887427776627887899998889-----9999998
No 193
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.72 E-value=0.07 Score=31.67 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=21.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 999588988358999999999980899978867621
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
-|.+|+|||||| ++..+..++... ....++.+++
T Consensus 3 GIaG~sgSGKST-~a~~l~~~l~~~-~~~~~v~ii~ 36 (220)
T cd02025 3 GIAGSVAVGKST-TARVLQALLSRW-PDHPNVELIT 36 (220)
T ss_pred EEECCCCCCHHH-HHHHHHHHHHHC-CCCCCEEEEE
T ss_conf 978899877999-999999986002-6999489997
No 194
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.65 E-value=0.39 Score=26.52 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=24.0
Q ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 9853898966999588988358999999999980899978867621
Q gi|254780952|r 37 AVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 37 av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
.+..+...++.+.+++|||||+.|-. ++.-+.+.+ .++..++
T Consensus 32 ~~~~~~~~~l~i~G~~GsGKTHLl~a-~~~~~~~~~---~~~~yl~ 73 (226)
T TIGR03420 32 LAAGKGDRFLYLWGESGSGKSHLLQA-ACAAAEERG---KSAIYLP 73 (226)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCCC---CCEEEEC
T ss_conf 76466888699989999988999999-999986269---9579952
No 195
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.61 E-value=0.49 Score=25.88 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHCCCCC--------HHHEEE--EEECHHHHHHHHHHHHH
Q ss_conf 2998899998538989669-995889883589999999999808999--------788676--21147999999999998
Q gi|254780952|r 29 GLNAQQTHAVTIPDDTPLL-ILAGAGTGKTTVLIARMLHLICHKEIP--------PSKILA--MTFTNQAIQEMKNRLAC 97 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~~~~l-V~AgaGsGKT~~L~~ri~~Ll~~~~~~--------p~~Il~--iTFT~~AA~el~~Ri~~ 97 (685)
.++.++|++-. ...+-++ .++-+|||||| |++.+...|...|.. -+..|+ +-|++.-..|...|+..
T Consensus 9 ~v~~~~r~~~~-~~~~~viW~TGLSGsGKST-iA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvae 86 (197)
T COG0529 9 SVTKQEREALK-GQKGAVIWFTGLSGSGKST-IANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAE 86 (197)
T ss_pred CCCHHHHHHHH-CCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 15888898872-7998599964688887879-999999999975975898557467650057889786789999999999
No 196
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.59 E-value=0.2 Score=28.58 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=15.1
Q ss_pred HCCCCCHHHHEE-CCC--H--HHHHHHHH-HHCCCCCEE
Q ss_conf 113653031110-100--1--47889987-520233203
Q gi|254780952|r 369 TGMSLNNIAILV-RTS--W--QTRKFEDA-FLEQEIPHK 401 (685)
Q Consensus 369 ~g~~~~diAVL~-Rtn--~--~~~~l~~~-L~~~gIP~~ 401 (685)
.|..+++.-||. |.. + -+-.++.. -.+.|.|+-
T Consensus 189 ~Gl~~g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl 227 (421)
T TIGR03600 189 NGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVL 227 (421)
T ss_pred CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 699988689998546787459999999999986698389
No 197
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=93.56 E-value=0.37 Score=26.69 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=14.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9898072899999999999997
Q gi|254780952|r 127 PTDFAILDSAESRTIIKQLLKD 148 (685)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~~~~~ 148 (685)
...|.|+|.+--..++++.+..
T Consensus 86 ~r~~~i~DaPGH~~y~rNMitg 107 (613)
T PRK05506 86 KRKFIVADTPGHEQYTRNMATG 107 (613)
T ss_pred CEEEEEECCCCHHHHHHHHHHH
T ss_conf 7059994289679899899987
No 198
>PRK05748 replicative DNA helicase; Provisional
Probab=93.55 E-value=0.19 Score=28.62 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=13.9
Q ss_pred HEEEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 1169983132112576543335556888723
Q gi|254780952|r 624 KKCHLFYTINRRTHDFTRVERYQPSQVSQFL 654 (685)
Q Consensus 624 ~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl 654 (685)
...-|..+++|++.-..-...+.+ .-+||.
T Consensus 411 ~~~e~ivaKnR~G~~g~v~~~f~~-~~~rf~ 440 (448)
T PRK05748 411 NTIEIIIGKQRNGPVGTVRLAFQK-EYNKFV 440 (448)
T ss_pred CEEEEEEECCCCCCCCEEEEEEEC-CCCCHH
T ss_conf 827999972689986059999867-878720
No 199
>PRK02496 adk adenylate kinase; Provisional
Probab=93.51 E-value=0.57 Score=25.42 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=21.7
Q ss_pred HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889740122102532107751134688787751
Q gi|254780952|r 224 HVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLC 256 (685)
Q Consensus 224 ~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~ 256 (685)
.+.+.|+++-.++-||=-|+...+.-+|...|+
T Consensus 151 pvi~~y~~~~~~~~Idg~~~ieeV~~~I~~~l~ 183 (185)
T PRK02496 151 PLIDYYRDRQKLLTIDGNQSVEAVTTRLKAALA 183 (185)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 999999846978999899998999999999863
No 200
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.51 E-value=0.18 Score=28.93 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=21.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHH
Q ss_conf 69995889883589999999999808999788676211479999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQ 89 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~ 89 (685)
+++++-=|||||||.+. +|+.+...+-.+-=+.|=|| |.||.
T Consensus 100 im~vGlqGsGKTTT~aK-LA~~~kk~g~kv~lvaaDt~-RpaA~ 141 (433)
T PRK00771 100 ILLVGLQGSGKTTTAAK-LARYFQKKGLKVGVICADTW-RPGAY 141 (433)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHHHCCCCEEEEECCCC-CHHHH
T ss_conf 99973788978999999-99999977994678506788-36899
No 201
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=93.51 E-value=0.08 Score=31.27 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=22.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHE
Q ss_conf 699958898835899999999998089997886
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKI 78 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~I 78 (685)
+.|.+|.|||||+ ++.+++..+...++.+..+
T Consensus 2 IgIaG~SgSGKTT-~a~~L~~~l~~~~~~~~~~ 33 (196)
T pfam00485 2 IGVAGSSGAGKTT-VARTFVSIFGREGVPAAGI 33 (196)
T ss_pred EEEECCCCCCHHH-HHHHHHHHHCCCCCCCCCC
T ss_conf 8998998571999-9999999966058776412
No 202
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=93.49 E-value=0.55 Score=25.51 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=17.2
Q ss_pred HHHHHCCCCCHHHHEECCCH----HHHHHHHHHHCCCCCEEEE
Q ss_conf 66531136530311101001----4788998752023320320
Q gi|254780952|r 365 NIQNTGMSLNNIAILVRTSW----QTRKFEDAFLEQEIPHKVI 403 (685)
Q Consensus 365 ~l~~~g~~~~diAVL~Rtn~----~~~~l~~~L~~~gIP~~~~ 403 (685)
..+.+|+. .|.++.|-- |.+.+.+.|...||++...
T Consensus 351 ~~i~~GYQ---~ALMAPTEiLA~QHy~~~~~~l~p~~~~vaLL 390 (721)
T TIGR00643 351 AAIESGYQ---VALMAPTEILAEQHYDSLRNLLAPLGIEVALL 390 (721)
T ss_pred HHHHCCCE---EEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99846980---99917768999999999999623548578886
No 203
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=93.43 E-value=0.022 Score=35.17 Aligned_cols=60 Identities=28% Similarity=0.419 Sum_probs=34.3
Q ss_pred CHHHHHHHHCCCCCCEEEEEC-CCCCHHHHHHHHHHHHHHC------CCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 988999985389896699958-8988358999999999980------89997886762114799999999999851645
Q gi|254780952|r 31 NAQQTHAVTIPDDTPLLILAG-AGTGKTTVLIARMLHLICH------KEIPPSKILAMTFTNQAIQEMKNRLACYLGEK 102 (685)
Q Consensus 31 n~~Q~~av~~~~~~~~lV~Ag-aGsGKT~~L~~ri~~Ll~~------~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~ 102 (685)
-++=.+||..| =|+|+|| -||||||=|=.-..-| -. +...|++|. |.-+-+||+.-||..
T Consensus 74 RedI~~AI~~n---QVviiAGETGSGKTTQLPKICLEL-GrG~~GlIGHTQPRRlA--------AR~VA~R~AeELgtp 140 (1320)
T TIGR01967 74 REDIAKAIAEN---QVVIIAGETGSGKTTQLPKICLEL-GRGSRGLIGHTQPRRLA--------ARSVAERVAEELGTP 140 (1320)
T ss_pred HHHHHHHHHHC---CEEEEECCCCCCCCCCCHHHHHHH-CCCCCCCCCCCCHHHHH--------HHHHHHHHHHHHCCC
T ss_conf 89999999848---989997244876202321677754-27876541247146889--------999999999983889
No 204
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=93.43 E-value=0.08 Score=31.27 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=21.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 98966999588988358999999999980899
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
..=|++=.+-|||||||| +..|+.|..+=||
T Consensus 41 ~~LHMiFKGNPGTGKTTV-AR~~gklf~emnv 71 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTV-ARLLGKLFKEMNV 71 (261)
T ss_pred CEEEEEEECCCCCCHHHH-HHHHHHHHHHCCC
T ss_conf 447877427866843899-9999999853375
No 205
>PRK08840 replicative DNA helicase; Provisional
Probab=93.34 E-value=0.19 Score=28.68 Aligned_cols=33 Identities=15% Similarity=-0.034 Sum_probs=16.6
Q ss_pred HEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf 1169983132112576543335556888723314
Q gi|254780952|r 624 KKCHLFYTINRRTHDFTRVERYQPSQVSQFLLEL 657 (685)
Q Consensus 624 ~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El 657 (685)
...-|..+++|++.-..-...+.+ ..+||.+.-
T Consensus 425 ~~~elivaKnR~G~~G~v~l~f~~-~~~rF~~~~ 457 (464)
T PRK08840 425 GTAEIIIGKQRNGPIGSVRLTFQG-QYSRFDNYA 457 (464)
T ss_pred CEEEEEEECCCCCCCEEEEEEEEC-CCCCCCCCC
T ss_conf 806999972688986069999856-877530368
No 206
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=93.33 E-value=0.6 Score=25.25 Aligned_cols=124 Identities=17% Similarity=0.302 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECH--HHHH--HHCCCCCCHHH-------HHHHCCCCCCEEEEE
Q ss_conf 253210775113468878775111126788759999530--6886--31133220134-------554205766406787
Q gi|254780952|r 235 YIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDE--NQCI--YEWRGAQFSHI-------LNFQKDFKDANIIKL 303 (685)
Q Consensus 235 ~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~--dQsI--Y~fRGA~~~~~-------~~f~~~f~~~~~i~L 303 (685)
-++|||..=|= .| |+-+.. ||- ||+- |||| -|..+ ..|.+..+ ++|..
T Consensus 335 LlviDESHVT~-PQ---~~GMY~-------------GD~SRK~~LVeYGFR--LPSAlDNRPLkfeEF~~~~~--Q~vyV 393 (667)
T TIGR00631 335 LLVIDESHVTL-PQ---IGGMYN-------------GDRSRKQTLVEYGFR--LPSALDNRPLKFEEFEERIN--QVVYV 393 (667)
T ss_pred EEEEEECCCCH-HH---HHHHHH-------------CCHHHHHHHHHCCCC--CCHHCCCCCCCHHHHHHHCC--CEEEE
T ss_conf 89884025750-22---134413-------------046765433202775--30013587898799998559--88999
Q ss_pred E------ECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC-CCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHH
Q ss_conf 6------126751467875202444343201012222102355-674488731553100000000136665311365303
Q gi|254780952|r 304 E------QNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHD-DAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNI 376 (685)
Q Consensus 304 ~------~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~-~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~di 376 (685)
+ ++=+|...||+ ++| ||.|= ++.|.+....+ |.+.+.++|++....|- .+
T Consensus 394 SATPG~~E~e~S~~~vvE---Qii--------------RPTGLlDP~i~VRP~~g---QvdDL~~EI~~R~~~~E---Rv 450 (667)
T TIGR00631 394 SATPGDYELEQSGGNVVE---QII--------------RPTGLLDPEIEVRPTDG---QVDDLLSEIRQRVARNE---RV 450 (667)
T ss_pred ECCCCHHHHHHHCCCEEE---EEE--------------CCCCCCCCEEEEECCCC---HHHHHHHHHHHHHHCCC---CE
T ss_conf 638858999732691589---987--------------37786488368835851---58888999999997289---48
Q ss_pred HHEECCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 11101001478899875202332032
Q gi|254780952|r 377 AILVRTSWQTRKFEDAFLEQEIPHKV 402 (685)
Q Consensus 377 AVL~Rtn~~~~~l~~~L~~~gIP~~~ 402 (685)
-|.+=|.+.|..|.++|.+.||-++.
T Consensus 451 LVTTLTKkMAEdLTdYl~E~Gikv~Y 476 (667)
T TIGR00631 451 LVTTLTKKMAEDLTDYLKELGIKVRY 476 (667)
T ss_pred EEEEHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99820167788999997058837987
No 207
>PRK09862 putative ATP-dependent protease; Provisional
Probab=93.30 E-value=0.065 Score=31.87 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=15.5
Q ss_pred EECHHHHHHHHHHHHHHCCC
Q ss_conf 11479999999999985164
Q gi|254780952|r 82 TFTNQAIQEMKNRLACYLGE 101 (685)
Q Consensus 82 TFT~~AA~el~~Ri~~~l~~ 101 (685)
=.-..|++|-|+||+..+..
T Consensus 36 GLpd~av~EsreRVrsAl~n 55 (506)
T PRK09862 36 GLPETTVKEARDRVRSAIIN 55 (506)
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 78469999999999999983
No 208
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.093 Score=30.81 Aligned_cols=58 Identities=21% Similarity=0.347 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCHHHHHHCCC---HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 23211368321588876299---889999853898966999588988358999999999980
Q gi|254780952|r 12 HILKGDFVPSCVPNYLKGLN---AQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICH 70 (685)
Q Consensus 12 ~~~~~~~~~~~~~~~l~~Ln---~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~ 70 (685)
.+.+.+|+|+.+|.==+.++ .-=..++......+++|.+.||||||.++- .+...+.+
T Consensus 8 ~vl~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~-~v~~~l~~ 68 (366)
T COG1474 8 DVLLEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVK-FVMEELEE 68 (366)
T ss_pred CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHH-HHHHHHHH
T ss_conf 42475558220103488999999999998558998607998899987328999-99999973
No 209
>PRK08116 hypothetical protein; Validated
Probab=93.28 E-value=0.11 Score=30.20 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=21.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEEC
Q ss_conf 6699958898835899999999998089997886762114
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFT 84 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT 84 (685)
.++..++||+|||+..+.-+-+|+ +.|. .++.+|+.
T Consensus 110 GLll~G~~GtGKThLa~aIa~~l~-~~g~---~V~~~~~~ 145 (262)
T PRK08116 110 GLLLWGSPGNGKTYLAAAIANELI-EKGV---PVVFVNVP 145 (262)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCC---EEEEEEHH
T ss_conf 189989899989999999999999-8799---39998899
No 210
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.26 E-value=0.13 Score=29.76 Aligned_cols=12 Identities=8% Similarity=-0.000 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 532107751134
Q gi|254780952|r 236 IMVDEYQDINTP 247 (685)
Q Consensus 236 ilVDEfQDtn~~ 247 (685)
--+.-.|||..+
T Consensus 99 Y~Cp~CkDTGyi 110 (330)
T PRK06835 99 YTCPKCKDTGFI 110 (330)
T ss_pred CCCCCCCCCCCC
T ss_conf 899987588886
No 211
>PRK09401 reverse gyrase; Reviewed
Probab=93.25 E-value=0.59 Score=25.31 Aligned_cols=67 Identities=19% Similarity=0.101 Sum_probs=48.7
Q ss_pred HCCCHHHHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHH
Q ss_conf 6299889999853-8989669995889883589999999999808999788676211479999999999985
Q gi|254780952|r 28 KGLNAQQTHAVTI-PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACY 98 (685)
Q Consensus 28 ~~Ln~~Q~~av~~-~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~ 98 (685)
..+..-|+-++.- -.+...-++|+.|.|||+-..--..|+-.. | ++.+.|--|+.-+....+|+..+
T Consensus 77 ~~~w~~Qr~WakR~~~g~SFaiiAPTG~GKTtfgl~~sly~a~k-g---kks~~i~PT~~Lv~Q~~~kl~~~ 144 (1176)
T PRK09401 77 SEPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMALYLAKK-G---KKSYIIFPTRLLVEQVVEKLRKL 144 (1176)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC-C---CEEEEEECCHHHHHHHHHHHHHH
T ss_conf 99848899999998668974898889988889999999999865-9---83999968889999999999999
No 212
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=93.24 E-value=0.38 Score=26.62 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=47.4
Q ss_pred CHHHHHHCCCHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHH
Q ss_conf 158887629988999985389-8966999588988358999999999980899978867621147999999999998
Q gi|254780952|r 22 CVPNYLKGLNAQQTHAVTIPD-DTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLAC 97 (685)
Q Consensus 22 ~~~~~l~~Ln~~Q~~av~~~~-~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~ 97 (685)
....+.=.|++=|++|+.+-. +..|+|.|.-|||||-+--.-|++-+.++ .++..+|-.++-.+..-.++..
T Consensus 112 ~~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~----qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 112 PAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDG----QRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred HHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCC----CCEEECCCHHHHHHHHHHHHHH
T ss_conf 787489896789999999984799579973378985559999999998718----9448616306642067999999
No 213
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=93.23 E-value=0.058 Score=32.21 Aligned_cols=67 Identities=25% Similarity=0.470 Sum_probs=38.4
Q ss_pred HHHHHHCCCHHHHHHH--HCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 5888762998899998--53898966999588988358999999999980899978867621147999999999998516
Q gi|254780952|r 23 VPNYLKGLNAQQTHAV--TIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG 100 (685)
Q Consensus 23 ~~~~l~~Ln~~Q~~av--~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~ 100 (685)
+=+||+ ||+-.+.. ..|. | ||.+++||||||- |+.-||- +-+||--+|--=-| +.-..|
T Consensus 74 iVdFLK--~P~kf~~LGaKIPK-G-VLLvGPPGTGKTL-LAKAvAG---EA~VPFF~iSGSdF-----------VEMFVG 134 (505)
T TIGR01241 74 IVDFLK--NPSKFTKLGAKIPK-G-VLLVGPPGTGKTL-LAKAVAG---EAGVPFFSISGSDF-----------VEMFVG 134 (505)
T ss_pred HHHHCC--CCHHHHHCCCCCCC-C-EEEECCCCCCHHH-HHHHHHC---CCCCCCEEECCCCE-----------EECCCC
T ss_conf 342226--96379872788987-1-4731787842467-8875202---58896247407610-----------111205
Q ss_pred CCCCEEEE
Q ss_conf 45878961
Q gi|254780952|r 101 EKIPRIQT 108 (685)
Q Consensus 101 ~~~~~i~T 108 (685)
-.+.+|+-
T Consensus 135 VGASRVRD 142 (505)
T TIGR01241 135 VGASRVRD 142 (505)
T ss_pred CCCEEHHH
T ss_conf 64000144
No 214
>KOG0340 consensus
Probab=93.13 E-value=0.2 Score=28.51 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=51.4
Q ss_pred CHHHHHHHHCCCCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEE--EECHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 98899998538989-6699958898835899999999998089997886762--11479999999999985164587896
Q gi|254780952|r 31 NAQQTHAVTIPDDT-PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAM--TFTNQAIQEMKNRLACYLGEKIPRIQ 107 (685)
Q Consensus 31 n~~Q~~av~~~~~~-~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~i--TFT~~AA~el~~Ri~~~l~~~~~~i~ 107 (685)
+|-|..-|-.-.+| .++=-|--|||||..++--+..-+. .+|..|.++ |-|+.-|-.+-|++..+-..-..+++
T Consensus 31 TpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLs---edP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~ 107 (442)
T KOG0340 31 TPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLS---EDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVS 107 (442)
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHC---CCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 8267652487854663103134688741122278777613---3887606999545288888888999984564563279
Q ss_pred EHHHHHHHHH
Q ss_conf 1789999999
Q gi|254780952|r 108 TFHSFCASIL 117 (685)
Q Consensus 108 T~Hsf~~~il 117 (685)
+|-++-..|.
T Consensus 108 vivGG~d~i~ 117 (442)
T KOG0340 108 VIVGGTDMIM 117 (442)
T ss_pred EEECCHHHHH
T ss_conf 9975688764
No 215
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=93.10 E-value=0.2 Score=28.57 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=36.3
Q ss_pred EEEEECCCCCCCCCEEEEC---CC--CCCC--C---CCH----------HCC--CHHHHHH-HHHHHHHHHHHHHHEEEE
Q ss_conf 9996113455669836984---68--5766--8---422----------129--9678789-999999998586411699
Q gi|254780952|r 572 QIMTLHAAKGLEFDTVFIS---GW--EQGL--L---PHQ----------LSI--NEGNVEG-ERRLAYVGITRAKKKCHL 628 (685)
Q Consensus 572 ~i~TIH~SKGLEfd~V~i~---gl--~~g~--~---P~~----------~~~--~~~~~eE-ErRL~YVA~TRAk~~L~l 628 (685)
.+.|||.+-|+|+|.|.|+ ++ .+|. + |.. ... ++...+. =++-++|=|||+++-|||
T Consensus 265 evgsi~t~QG~Eldy~GVi~G~Dl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i~N~YrVLLTRG~~G~yi 344 (348)
T pfam09848 265 EVGSIYTCQGLELDYVGVIWGPDLVYRPGTDRIVFDGTKWEDKSAFQKRKDLKEDPEDADRLIKNTYRVLLTRGRKGLYI 344 (348)
T ss_pred HEEEEEEECCCCCCEEEEEECCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 10577852032232159998785478779606996753103710013455444587899999999999988643764899
Q ss_pred EEC
Q ss_conf 831
Q gi|254780952|r 629 FYT 631 (685)
Q Consensus 629 ~~~ 631 (685)
+++
T Consensus 345 y~~ 347 (348)
T pfam09848 345 YAP 347 (348)
T ss_pred EEC
T ss_conf 954
No 216
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=93.08 E-value=0.66 Score=24.97 Aligned_cols=55 Identities=22% Similarity=0.368 Sum_probs=41.4
Q ss_pred ECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 3155310000000013666531136530311101001478899875202332032033
Q gi|254780952|r 348 VSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG 405 (685)
Q Consensus 348 ~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~ 405 (685)
.+.+..+-...|+++|.+++..|-| +-|-++|=..+..++..|.+.|||+.+...
T Consensus 410 v~~t~~~k~~av~~~v~~~~~~g~p---vLvgt~sv~~Se~~s~~L~~~~i~h~vLnA 464 (799)
T PRK09200 410 VFATVDEKYKAVIEEVKERHETGRP---VLIGTGSIEQSEYFSKLLFEAGIPHNLLNA 464 (799)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 1089999999999999999857998---899838579999999999865764332053
No 217
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.07 E-value=0.078 Score=31.33 Aligned_cols=33 Identities=39% Similarity=0.492 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 9669995889883589999999999808999788
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSK 77 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~ 77 (685)
+.++|++.||||||+.|-+-...+..+.+ .|+.
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~-~~~~ 255 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTL-EPED 255 (824)
T ss_pred HHEEEECCCCCCHHHHHHHHHHHHHHCCC-CCCC
T ss_conf 23334468887626799999999741525-6656
No 218
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.98 E-value=0.21 Score=28.39 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=34.8
Q ss_pred CCCCCHHHHHH--CC---CHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHH
Q ss_conf 68321588876--29---98899998538989669995889883589999999999808999788676211479999999
Q gi|254780952|r 18 FVPSCVPNYLK--GL---NAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMK 92 (685)
Q Consensus 18 ~~~~~~~~~l~--~L---n~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~ 92 (685)
+-|..+.++.- .| +.-=+.+|....=.+++.-++||+|||+ |++-++.-. +.+ ..-+.=|..-..|++
T Consensus 7 ~RP~~lde~vGQ~hllg~~~~L~~~i~~~~~~s~Il~GPPG~GKTT-lA~iiA~~~---~~~---f~~lnA~~~gv~dir 79 (417)
T PRK13342 7 MRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTT-LARIIAGAT---DAE---FEALSAVTSGVKDLR 79 (417)
T ss_pred HCCCCHHHHCCCHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHHH-HHHHHHHHH---CCC---EEEEECCCCCHHHHH
T ss_conf 4999888857987760897199999976999759988969998999-999999986---898---899614103889999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780952|r 93 NRLA 96 (685)
Q Consensus 93 ~Ri~ 96 (685)
+-+.
T Consensus 80 ~ii~ 83 (417)
T PRK13342 80 EVIE 83 (417)
T ss_pred HHHH
T ss_conf 9999
No 219
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=92.91 E-value=0.067 Score=31.80 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=14.3
Q ss_pred EEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 99588988358999999999980
Q gi|254780952|r 48 ILAGAGTGKTTVLIARMLHLICH 70 (685)
Q Consensus 48 V~AgaGsGKT~~L~~ri~~Ll~~ 70 (685)
|+++||||||| ++..+...+..
T Consensus 1 ViGpaGSGKTT-~~~~l~~~l~~ 22 (234)
T pfam03029 1 VVGGAGSGKTT-FVGALSEILPL 22 (234)
T ss_pred CCCCCCCCHHH-HHHHHHHHHHH
T ss_conf 98989898899-99999999997
No 220
>KOG0343 consensus
Probab=92.91 E-value=0.045 Score=32.99 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHCCCCCC-EEEEECCCCCHHHHHHHHHH-HHHHCC--CCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 29988999985389896-69995889883589999999-999808--999788676211479999999999985164587
Q gi|254780952|r 29 GLNAQQTHAVTIPDDTP-LLILAGAGTGKTTVLIARML-HLICHK--EIPPSKILAMTFTNQAIQEMKNRLACYLGEKIP 104 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~~~-~lV~AgaGsGKT~~L~~ri~-~Ll~~~--~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~ 104 (685)
.+++-|++.|-....|+ ++=.|--|||||-..+--+. .|...+ ..+.=..|+||-||--|-..-+-+.+
T Consensus 91 ~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~k------- 163 (758)
T KOG0343 91 KMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNK------- 163 (758)
T ss_pred CHHHHHHHHCCHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHH-------
T ss_conf 6999987641422057500010235888446543999999997177887883269956529999999999998-------
Q ss_pred EEEEHHHHHHH
Q ss_conf 89617899999
Q gi|254780952|r 105 RIQTFHSFCAS 115 (685)
Q Consensus 105 ~i~T~Hsf~~~ 115 (685)
||-+|+|...
T Consensus 164 -vgk~h~fSaG 173 (758)
T KOG0343 164 -VGKHHDFSAG 173 (758)
T ss_pred -HHHCCCCCCC
T ss_conf -7520564311
No 221
>KOG0991 consensus
Probab=92.91 E-value=0.18 Score=28.89 Aligned_cols=51 Identities=24% Similarity=0.433 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHCC-CHHHHHHHHCCCCCC-EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 6832158887629-988999985389896-69995889883589999999999
Q gi|254780952|r 18 FVPSCVPNYLKGL-NAQQTHAVTIPDDTP-LLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 18 ~~~~~~~~~l~~L-n~~Q~~av~~~~~~~-~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
|-|+.+.++.-+= +-+--+.+....+-| +++.+.||+|||+++..-...|+
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991 21 YRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HCCHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 08529988217798999999999728998667527999861648999999983
No 222
>PRK04195 replication factor C large subunit; Provisional
Probab=92.90 E-value=0.19 Score=28.69 Aligned_cols=42 Identities=19% Similarity=0.409 Sum_probs=25.2
Q ss_pred CCCCCCHHHHHHCCCHHHHHHHH----C----CC-CCCEEEEECCCCCHHHHH
Q ss_conf 36832158887629988999985----3----89-896699958898835899
Q gi|254780952|r 17 DFVPSCVPNYLKGLNAQQTHAVT----I----PD-DTPLLILAGAGTGKTTVL 60 (685)
Q Consensus 17 ~~~~~~~~~~l~~Ln~~Q~~av~----~----~~-~~~~lV~AgaGsGKT~~L 60 (685)
-|-|..+.++.. |++..+.+. . .. ..++|+.++||+|||++.
T Consensus 7 KYRPk~~~divg--~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a 57 (403)
T PRK04195 7 KYRPKSLSDVVG--NEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLA 57 (403)
T ss_pred CCCCCCHHHHHC--CHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 218998999858--899999999999998739965746998893998799999
No 223
>PRK08694 consensus
Probab=92.75 E-value=0.3 Score=27.34 Aligned_cols=29 Identities=10% Similarity=-0.049 Sum_probs=13.6
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 699831321125765433355568887233
Q gi|254780952|r 626 CHLFYTINRRTHDFTRVERYQPSQVSQFLL 655 (685)
Q Consensus 626 L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~ 655 (685)
.-+..+++|++.-..-...+.+ +-+||-+
T Consensus 428 ~e~ivaK~R~G~~G~v~l~f~~-~~~rF~~ 456 (468)
T PRK08694 428 AECIIGKHRNGPVGKIFLTWTG-QFTKFDN 456 (468)
T ss_pred EEEEEECCCCCCCCEEEEEEEC-CCCCCCC
T ss_conf 7999970578986159999855-8674505
No 224
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=92.71 E-value=0.15 Score=29.45 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=20.1
Q ss_pred CEEEE-ECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 66999-5889883589999999999808999788676211
Q gi|254780952|r 45 PLLIL-AGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 45 ~~lV~-AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
|+.|+ +-.||||||.|-+ ++.+. -...++.+|.-
T Consensus 1 Pv~iitGFLGsGKTTll~~----ll~~~-~~~~~~avI~N 35 (174)
T pfam02492 1 PVTVLTGFLGSGKTTLLEH----LLRDN-REGLKIAVIVN 35 (174)
T ss_pred CEEEEECCCCCCHHHHHHH----HHHHC-CCCCCEEEEEE
T ss_conf 9699934887889999999----99844-48984799993
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.69 E-value=0.6 Score=25.25 Aligned_cols=48 Identities=29% Similarity=0.457 Sum_probs=22.3
Q ss_pred CCCCCCCHH-HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 875465024-668888788773984689997641046799778543343433356
Q gi|254780952|r 438 CPKRGIGKE-SLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIR 491 (685)
Q Consensus 438 ~p~~gi~~~-~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 491 (685)
+|. |+|++ ++++|.......+.. -.++....++..+.+.|+.+.+.+.
T Consensus 248 GPT-GVGKTTTIAKLAArf~~~~Kk-----VALITtDTYRIGAVEQLKTYAeIMg 296 (436)
T PRK11889 248 GPT-GVGKTTTLAKMAWQFHGKKKT-----VGFITTDHSRIGTVQQLQDYVKTIG 296 (436)
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCE-----EEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 999-988899999999998616980-----8999806634769999999999849
No 226
>PRK08006 replicative DNA helicase; Provisional
Probab=92.67 E-value=0.3 Score=27.35 Aligned_cols=29 Identities=17% Similarity=-0.011 Sum_probs=13.0
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 699831321125765433355568887233
Q gi|254780952|r 626 CHLFYTINRRTHDFTRVERYQPSQVSQFLL 655 (685)
Q Consensus 626 L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~ 655 (685)
.-|..+++|++.-..-...+.+ .-+||.+
T Consensus 434 ~elivaKnR~G~~G~v~l~f~~-~~~rF~~ 462 (471)
T PRK08006 434 AEIIIGKQRNGPIGTVRLTFNG-QWSRFDN 462 (471)
T ss_pred EEEEEECCCCCCCEEEEEEEEC-CCCCCCC
T ss_conf 6999973688986069999846-8775403
No 227
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.65 E-value=0.39 Score=26.58 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=17.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6999588988358999999999980899
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
+-|+++||||||++ +.++.+.|+
T Consensus 5 IglTG~igsGKStv-----a~~~~~~G~ 27 (201)
T COG0237 5 IGLTGGIGSGKSTV-----AKILAELGF 27 (201)
T ss_pred EEEECCCCCCHHHH-----HHHHHHCCC
T ss_conf 99957887788999-----999997799
No 228
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.62 E-value=0.099 Score=30.63 Aligned_cols=97 Identities=20% Similarity=0.270 Sum_probs=42.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEH--HHHHHHHHHHHHH
Q ss_conf 66999588988358999999999980899978867621147999999999998516458789617--8999999998499
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQTF--HSFCASILRKHGE 122 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~T~--Hsf~~~il~~~~~ 122 (685)
.++|+++||||||| ++.+++.-+.--.++-..++= =..++..++-.++...+.....-...+ ..++.++-+..+.
T Consensus 2 riiilG~pGaGK~T-~A~~La~~~~i~hlstgd~~r--~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~ 78 (178)
T COG0563 2 RILILGPPGAGKST-LAKKLAKKLGLPHLDTGDILR--AAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCK 78 (178)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHCCCCEECCCCCCC--HHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 79998999998899-999999976997855220111--100323689999999987589504176997999999750657
Q ss_pred ----HCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf ----8487989807289999999999999739
Q gi|254780952|r 123 ----VVGLPTDFAILDSAESRTIIKQLLKDLQ 150 (685)
Q Consensus 123 ----~~g~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (685)
..|+|+ ...|...+++.+.+++
T Consensus 79 ~~~I~dg~PR------~~~qa~~l~r~l~~~g 104 (178)
T COG0563 79 AGFILDGFPR------TLCQARALKRLLKELG 104 (178)
T ss_pred CEEEEECCCC------HHHHHHHHHHHHHHCC
T ss_conf 7299989983------6999999999998639
No 229
>PRK09183 transposase/IS protein; Provisional
Probab=92.58 E-value=0.18 Score=28.90 Aligned_cols=12 Identities=42% Similarity=0.841 Sum_probs=3.8
Q ss_pred EEEEECCCCCHH
Q ss_conf 699958898835
Q gi|254780952|r 46 LLILAGAGTGKT 57 (685)
Q Consensus 46 ~lV~AgaGsGKT 57 (685)
++++++||+|||
T Consensus 104 vil~G~~GtGKT 115 (258)
T PRK09183 104 IVLLGPSGVGKT 115 (258)
T ss_pred EEEECCCCCCHH
T ss_conf 799899998689
No 230
>PRK10867 signal recognition particle protein; Provisional
Probab=92.58 E-value=0.25 Score=27.84 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=20.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEE---EEECHHHHH
Q ss_conf 69995889883589999999999808999788676---211479999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILA---MTFTNQAIQ 89 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~---iTFT~~AA~ 89 (685)
+++++-=|||||||.+. +|+.+...+ -.++++ =|| |.||.
T Consensus 103 Im~vGLqGsGKTTT~aK-LA~~lk~k~--~k~vllvaaDt~-RpaA~ 145 (453)
T PRK10867 103 VLMAGLQGAGKTTSVGK-LGKFLREKH--KKKVLVVSADVY-RPAAI 145 (453)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHHHCC--CCEEEEECCCCC-HHHHH
T ss_conf 99974688851858999-999999738--983798558877-05899
No 231
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=92.58 E-value=0.042 Score=33.20 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=39.0
Q ss_pred CCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEEC
Q ss_conf 936999611345566983698468576684221299678789999999998586411699831
Q gi|254780952|r 569 NCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLFYT 631 (685)
Q Consensus 569 d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~~~ 631 (685)
..|.|-|+++-=|-|-|+||+...-.+ -+. ..-+-+...||| =||+||||+.|++...
T Consensus 670 ~~v~v~tVd~fQG~EkdvIi~S~v~s~-~~~---~~i~~l~d~rRL-NVAlTRAk~~livvg~ 727 (767)
T COG1112 670 KGVEVGTVDGFQGREKDVIILSLVRSN-DDK---GEIGFLGDPRRL-NVALTRAKRKLIVVGS 727 (767)
T ss_pred CCCEECCCCCCCCCCCCEEEEEEEECC-CCC---CCCCCCCCCCCE-EEHHHHCCCCEEEEEC
T ss_conf 672578876617986657999865417-877---753213687521-1464440264599966
No 232
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.57 E-value=0.34 Score=26.99 Aligned_cols=68 Identities=24% Similarity=0.443 Sum_probs=45.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCH----HHEEEEEECHHHH-----HHHHHHHHHHCCCC-------CCEEE
Q ss_conf 96699958898835899999999998089997----8867621147999-----99999999851645-------87896
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPP----SKILAMTFTNQAI-----QEMKNRLACYLGEK-------IPRIQ 107 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p----~~Il~iTFT~~AA-----~el~~Ri~~~l~~~-------~~~i~ 107 (685)
.+.++++-||.|||. +++-+|..|.++.||+ .+|+.|-.+.--| .|+-+|+...+.+- ...|-
T Consensus 200 NNpiLvGepGVGKTA-IvEGLA~rI~~g~VP~~L~~~~I~~LDlg~L~AGakyRGeFEeRLk~il~ev~~~~~~iILFID 278 (857)
T PRK10865 200 NNPVLIGEPGVGKTA-IVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 278 (857)
T ss_pred CCCEEECCCCCCHHH-HHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 997587899988999-9999999998389997881690247338878614765211799999999999847898699973
Q ss_pred EHHHH
Q ss_conf 17899
Q gi|254780952|r 108 TFHSF 112 (685)
Q Consensus 108 T~Hsf 112 (685)
-+|.+
T Consensus 279 EiHtl 283 (857)
T PRK10865 279 ELHTM 283 (857)
T ss_pred CHHHH
T ss_conf 43543
No 233
>KOG0922 consensus
Probab=92.57 E-value=0.29 Score=27.46 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=30.2
Q ss_pred CCCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCC-HHHEEEEEECHHHHHHHHHHHHHHC
Q ss_conf 896699958-89883589999999999808999-7886762114799999999999851
Q gi|254780952|r 43 DTPLLILAG-AGTGKTTVLIARMLHLICHKEIP-PSKILAMTFTNQAIQEMKNRLACYL 99 (685)
Q Consensus 43 ~~~~lV~Ag-aGsGKT~~L~~ri~~Ll~~~~~~-p~~Il~iTFT~~AA~el~~Ri~~~l 99 (685)
+..++|+.| -||||||=+.+ ||.+. |.. -+.|.|.---|-||..+..|++.-.
T Consensus 65 ~nqvlIviGeTGsGKSTQipQ---yL~ea-G~~~~g~I~~TQPRRVAavslA~RVAeE~ 119 (674)
T KOG0922 65 DNQVLIVIGETGSGKSTQIPQ---YLAEA-GFASSGKIACTQPRRVAAVSLAKRVAEEM 119 (674)
T ss_pred HCCEEEEECCCCCCCCCCHHH---HHHHC-CCCCCCCEEEECCCHHHHHHHHHHHHHHH
T ss_conf 787799984898985332769---99862-65668827750671677888999999985
No 234
>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=92.48 E-value=0.22 Score=28.19 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=33.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHH
Q ss_conf 999588988358999999999980899978867621147999999999
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNR 94 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~R 94 (685)
++.+|+|||||++++..+.+-... .++.+++++.-|...+.+...+
T Consensus 1 ~~~ggr~~GKT~~~~~~~~~~a~~--~~~~~~~i~~~t~~~~~~~~~~ 46 (380)
T pfam03237 1 NILGSRQSGKTFAFAREALRHALG--NGPKNQIILSASKAQARLEFKK 46 (380)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHH
T ss_conf 942645252839999999999985--8997289997999999999999
No 235
>PTZ00301 uridine kinase; Provisional
Probab=92.47 E-value=0.18 Score=28.90 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=19.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 999588988358999999999980899978867621
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
-|.+|-|||||+ ++.+++..+.. ...|.++.+++
T Consensus 7 gIaGgSgSGKTT-~a~~i~~~l~~-~~~~~~v~ii~ 40 (210)
T PTZ00301 7 GISGASGSGKSS-LSTNIVSELMA-HCGPVSIGVIC 40 (210)
T ss_pred EEECCCCCCHHH-HHHHHHHHHHH-HCCCCCEEEEE
T ss_conf 996887678999-99999999876-14998079983
No 236
>PRK07667 uridine kinase; Provisional
Probab=92.41 E-value=0.16 Score=29.12 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=21.2
Q ss_pred CCCCCCEE--EEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 38989669--99588988358999999999980899
Q gi|254780952|r 40 IPDDTPLL--ILAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 40 ~~~~~~~l--V~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
.+.++.++ |-+|.|||||+ ++..++..+...++
T Consensus 9 ~~~~~r~iIgIaG~sgSGKTT-la~~L~~~l~~~~~ 43 (190)
T PRK07667 9 KHKENRFILGIDGLSRSGKTT-FVANLKENMKQEGI 43 (190)
T ss_pred HCCCCEEEEEEECCCCCCHHH-HHHHHHHHHHHCCC
T ss_conf 575986999977989788999-99999999866598
No 237
>pfam04466 Terminase_3 Phage terminase large subunit. Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possess an endonuclease and ATPase activity that require Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences.
Probab=92.30 E-value=0.25 Score=27.86 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=28.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHH
Q ss_conf 6999588988358999999999980899978867621147999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAI 88 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA 88 (685)
..+.+|-|||||..++..+...+.. .|.++||+.-|..+.
T Consensus 5 ~v~~GGrgsgKS~~~a~~~i~~~~~---~~~~~l~~r~~~~sl 44 (387)
T pfam04466 5 KVAKGGRGSGKSYHIALKLVLKLLM---HPRTNLVIREVKNTI 44 (387)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCHHHH
T ss_conf 9999088867999999999999987---898699997556889
No 238
>PRK08506 replicative DNA helicase; Provisional
Probab=92.26 E-value=0.56 Score=25.49 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=15.4
Q ss_pred HCCCCCHHHHEE-CC----CHHHHHHHHHHHCCCCCEE
Q ss_conf 113653031110-10----0147889987520233203
Q gi|254780952|r 369 TGMSLNNIAILV-RT----SWQTRKFEDAFLEQEIPHK 401 (685)
Q Consensus 369 ~g~~~~diAVL~-Rt----n~~~~~l~~~L~~~gIP~~ 401 (685)
.|..++|..||. |. -+-+-.++......|.|+-
T Consensus 188 ~Gl~~gdLiIIAARPsmGKTAfAlniA~~~a~~~~~V~ 225 (473)
T PRK08506 188 KGFNKGDLIIIAARPSMGKTTLVLNMVLKALNQGKGVA 225 (473)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 69985627999507998678999999999996599658
No 239
>PRK06904 replicative DNA helicase; Validated
Probab=92.24 E-value=0.34 Score=26.97 Aligned_cols=29 Identities=17% Similarity=-0.007 Sum_probs=14.3
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 699831321125765433355568887233
Q gi|254780952|r 626 CHLFYTINRRTHDFTRVERYQPSQVSQFLL 655 (685)
Q Consensus 626 L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~ 655 (685)
.-|..+++|++.-..-.-.+.+ +-+||.+
T Consensus 433 ~elivaKnR~G~~G~v~~~f~~-~~~rF~~ 461 (472)
T PRK06904 433 AEIIIGKQRNGPIGRVRLAFQG-QYSRFDN 461 (472)
T ss_pred EEEEEECCCCCCCCEEEEEEEC-CCCCCCC
T ss_conf 7999974778986169999857-8774304
No 240
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=92.22 E-value=0.13 Score=29.72 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=17.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 669995889883589999999999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
|+|+.+.||+|||+. ++.+|..+
T Consensus 1 hVLL~GppG~GKT~l-~~~lA~~~ 23 (131)
T pfam07726 1 HVLLEGVPGLAKTLL-ARTLARSL 23 (131)
T ss_pred CEEEECCCCCHHHHH-HHHHHHHH
T ss_conf 987898998769999-99999995
No 241
>PRK08082 consensus
Probab=92.21 E-value=0.38 Score=26.62 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=12.8
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 169983132112576543335556888723
Q gi|254780952|r 625 KCHLFYTINRRTHDFTRVERYQPSQVSQFL 654 (685)
Q Consensus 625 ~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl 654 (685)
..-|..+++|++.-..-...+.+ +-+||.
T Consensus 411 ~~e~ivaK~RnG~~g~v~l~f~~-~~~rf~ 439 (453)
T PRK08082 411 IIEIIIAKQRNGPVGTVELAFVK-EYNKFV 439 (453)
T ss_pred EEEEEEECCCCCCCCEEEEEEEC-CCCCHH
T ss_conf 06999973689986159999856-867430
No 242
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=92.21 E-value=0.11 Score=30.34 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=14.4
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 699958898835899999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~ 66 (685)
+|+.+.||||||++ ++-++.
T Consensus 1 iLl~GppGtGKT~~-a~~la~ 20 (131)
T pfam00004 1 LLLYGPPGTGKTTL-AKAVAK 20 (131)
T ss_pred CEEECCCCCCHHHH-HHHHHH
T ss_conf 98789999999999-999999
No 243
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.21 E-value=0.27 Score=27.66 Aligned_cols=30 Identities=7% Similarity=0.224 Sum_probs=19.5
Q ss_pred HHHHHHCCCCEEHHHHHHHHHHH---HHHHHHHH
Q ss_conf 68897401221025321077511---34688787
Q gi|254780952|r 223 PHVLKKYHEKIPYIMVDEYQDIN---TPQYLLLR 253 (685)
Q Consensus 223 ~~v~~~~~~r~~~ilVDEfQDtn---~~Q~~ll~ 253 (685)
.++++.|++ ++.+|||..|-.. ..|.+++.
T Consensus 194 ~~Fr~~yr~-~DvLLIDDIQfl~gK~~tqeEff~ 226 (455)
T PRK12422 194 QRFRSFYRN-VDALFIEDIEVFSGKGATQEEFFH 226 (455)
T ss_pred HHHHHHHHC-CCEEEEEHHHHHHCCHHHHHHHHH
T ss_conf 999999963-887763147887284889999999
No 244
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.14 E-value=0.24 Score=27.98 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=5.4
Q ss_pred EEEEEECHHHHHHH
Q ss_conf 67621147999999
Q gi|254780952|r 78 ILAMTFTNQAIQEM 91 (685)
Q Consensus 78 Il~iTFT~~AA~el 91 (685)
|++.++..+-..++
T Consensus 90 v~~~~~~~~~~~~l 103 (650)
T PTZ00112 90 VLRTNNKSENVREL 103 (650)
T ss_pred EEECCCCHHHHHHH
T ss_conf 86304622667776
No 245
>KOG0925 consensus
Probab=92.14 E-value=0.79 Score=24.43 Aligned_cols=99 Identities=23% Similarity=0.307 Sum_probs=52.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHH----CCCCCC---------EEEEHH
Q ss_conf 9669995889883589999999999808999788676211479999999999985----164587---------896178
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACY----LGEKIP---------RIQTFH 110 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~----l~~~~~---------~i~T~H 110 (685)
.-+.+++-.|||||+-+-+.++.-..... ..|.|.---|-||..+..|++.- +|.... .-.|+-
T Consensus 63 Q~~v~vGetgsGKttQiPq~~~~~~~~~~---~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~L 139 (699)
T KOG0925 63 QIIVLVGETGSGKTTQIPQFVLEYELSHL---TGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLL 139 (699)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHC---CCEEECCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHHH
T ss_conf 26999934888864547499999987633---661324715788999999888874431020115321212368715899
Q ss_pred HHHHH--HHHHHHHHCCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 99999--999849984879-898072899999999999
Q gi|254780952|r 111 SFCAS--ILRKHGEVVGLP-TDFAILDSAESRTIIKQL 145 (685)
Q Consensus 111 sf~~~--il~~~~~~~g~~-~~~~i~~~~~~~~~~~~~ 145 (685)
-||.. +||+-..--++. -...|+|+...+.+...+
T Consensus 140 ky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDi 177 (699)
T KOG0925 140 KYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDI 177 (699)
T ss_pred HHHCCHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHH
T ss_conf 99533289998750855453007995316666678999
No 246
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.13 E-value=0.13 Score=29.81 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=20.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 8989669995889883589999999999
Q gi|254780952|r 41 PDDTPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 41 ~~~~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
+.=|++||.+.+|||||+ ++.-++.|+
T Consensus 31 p~iGgVLi~G~~GtgKSt-lvRala~lL 57 (347)
T CHL00081 31 PKIGGVMIMGDRGTGKST-TIRALVDLL 57 (347)
T ss_pred CCCCEEEEECCCCCCHHH-HHHHHHHHC
T ss_conf 887869987899874999-999999857
No 247
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=92.13 E-value=0.19 Score=28.75 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6999588988358999999999980899
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
+.|++.=+||||+ |+.|++..|...|.
T Consensus 2 ~~i~G~k~SGKTt-L~~~l~~~L~~~Gy 28 (165)
T TIGR00176 2 LQIVGYKNSGKTT-LIERLVKALKARGY 28 (165)
T ss_pred EEEEEECCCCHHH-HHHHHHHHHHCCCC
T ss_conf 3789625886789-99999999970799
No 248
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=92.12 E-value=0.26 Score=27.71 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=28.1
Q ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEEC
Q ss_conf 985389896699958898835899999999998089997886762114
Q gi|254780952|r 37 AVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFT 84 (685)
Q Consensus 37 av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT 84 (685)
.|. .+.++++.+++|+|||+....-...++. .| .+++.+|++
T Consensus 43 ~i~--~~~Nlll~G~~GtGKThLA~Ai~~~~~~-~g---~~v~f~~~~ 84 (178)
T pfam01695 43 WIE--QAENLLLLGPPGVGKTHLACALGHQACR-AG---YSVLFTRTP 84 (178)
T ss_pred CHH--CCCCEEEECCCCCCHHHHHHHHHHHHHH-CC---CEEEEEECH
T ss_conf 421--5876899899998789999999999998-69---859999616
No 249
>PRK08760 replicative DNA helicase; Provisional
Probab=92.11 E-value=0.42 Score=26.33 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=12.8
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 69983132112576543335556888723
Q gi|254780952|r 626 CHLFYTINRRTHDFTRVERYQPSQVSQFL 654 (685)
Q Consensus 626 L~l~~~~~~~~~~~~~~~~~~~~~~SrFl 654 (685)
.-|..+++|++.-+.-...+.+ .-+||-
T Consensus 438 ~e~ivaKnR~G~~G~v~l~f~~-~~~rF~ 465 (476)
T PRK08760 438 AEIIIGKHRGGPTGSCKLKFFG-EYTRFD 465 (476)
T ss_pred EEEEEECCCCCCCCEEEEEEEC-CCCCCC
T ss_conf 7999974678986269999856-877703
No 250
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.08 E-value=0.17 Score=28.94 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=18.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6999588988358999999999980899
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
+-|.+|.|||||+ ++++++..+...+.
T Consensus 2 IgIaG~SgSGKTT-~a~~L~~~l~~~~~ 28 (179)
T cd02028 2 VGIAGPSGSGKTT-FAKKLSNQLRVNGI 28 (179)
T ss_pred EEEECCCCCCHHH-HHHHHHHHHHHCCC
T ss_conf 8998989778999-99999999846488
No 251
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.04 E-value=0.44 Score=26.17 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=25.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCH----HHEEEEEECHHHH-----HHHHHHHHHHC
Q ss_conf 699958898835899999999998089997----8867621147999-----99999999851
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPP----SKILAMTFTNQAI-----QEMKNRLACYL 99 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p----~~Il~iTFT~~AA-----~el~~Ri~~~l 99 (685)
.++++-||.|||. +++-+|+.|.++.||+ .+|+.|-.+.--| .|+-+|+...+
T Consensus 203 piLvGepGVGKTA-IvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il 264 (823)
T CHL00095 203 PILIGEPGVGKTA-IAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGEFEERIKKIM 264 (823)
T ss_pred CEEECCCCCCHHH-HHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 5023799987999-9999999760889986875993688428877533422267999999999
No 252
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.01 E-value=0.16 Score=29.14 Aligned_cols=17 Identities=47% Similarity=0.583 Sum_probs=13.5
Q ss_pred EEEEECCCCCHHHHHHH
Q ss_conf 69995889883589999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIA 62 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ 62 (685)
+.|++.||+||||+|-.
T Consensus 7 vvitGVpGvGKTTVl~~ 23 (189)
T COG2019 7 VVITGVPGVGKTTVLKI 23 (189)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99975798872669999
No 253
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=91.97 E-value=0.25 Score=27.93 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH--EEEEEE
Q ss_conf 89669995889883589999999999808999788--676211
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSK--ILAMTF 83 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~--Il~iTF 83 (685)
..|+||.+.+|||||..|-.-+..|+... +|++ +.++-|
T Consensus 38 ~pH~Lv~G~tGsGKS~~l~~li~sl~~~~--~p~~v~l~liD~ 78 (202)
T pfam01580 38 MPHLLIAGATGSGKSTFLNTLILSLAARH--SPEEVRLYLIDP 78 (202)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEECC
T ss_conf 88689965899980099999999998737--962069999748
No 254
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=91.90 E-value=0.17 Score=29.07 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=17.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 669995889883589999999999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
++++.+.||+|||+ |+..+++.+
T Consensus 1 ~vll~Gp~G~GKT~-la~~la~~l 23 (139)
T pfam07728 1 GVLLVGPPGTGKSE-LAERLAAAL 23 (139)
T ss_pred CEEEECCCCCHHHH-HHHHHHHHC
T ss_conf 98999899756999-999999980
No 255
>PRK06526 transposase; Provisional
Probab=91.86 E-value=0.33 Score=27.04 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=8.1
Q ss_pred CCEEEEECCCCCHHHHHH
Q ss_conf 966999588988358999
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLI 61 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~ 61 (685)
.++++++.||+|||+..+
T Consensus 99 ~Nvil~G~~GtGKThLA~ 116 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred CCEEEECCCCCCHHHHHH
T ss_conf 878998999986899999
No 256
>KOG0923 consensus
Probab=91.85 E-value=0.37 Score=26.69 Aligned_cols=65 Identities=26% Similarity=0.203 Sum_probs=37.9
Q ss_pred HHHHHHHHCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHCCCCCHHH-EEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 8899998538989669-995889883589999999999808999788-6762114799999999999851645
Q gi|254780952|r 32 AQQTHAVTIPDDTPLL-ILAGAGTGKTTVLIARMLHLICHKEIPPSK-ILAMTFTNQAIQEMKNRLACYLGEK 102 (685)
Q Consensus 32 ~~Q~~av~~~~~~~~l-V~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~-Il~iTFT~~AA~el~~Ri~~~l~~~ 102 (685)
++=-+||.. +-|| |.+-+|||||+-|-+ ||.+.+-..-+. |-|.---|-||.....|++.-.|..
T Consensus 271 dell~av~e---~QVLiI~GeTGSGKTTQiPQ---yL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvk 337 (902)
T KOG0923 271 DELLKAVKE---HQVLIIVGETGSGKTTQIPQ---YLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVK 337 (902)
T ss_pred HHHHHHHHH---CCEEEEECCCCCCCCCCCCH---HHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999999986---70899975788986445628---98854213589467406850688777999999985740
No 257
>PRK07004 replicative DNA helicase; Provisional
Probab=91.77 E-value=0.46 Score=26.02 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=17.0
Q ss_pred HHCCCCCHHHHEE-CC--CH--HHHHHHHHH-HCCCCCEEE
Q ss_conf 3113653031110-10--01--478899875-202332032
Q gi|254780952|r 368 NTGMSLNNIAILV-RT--SW--QTRKFEDAF-LEQEIPHKV 402 (685)
Q Consensus 368 ~~g~~~~diAVL~-Rt--n~--~~~~l~~~L-~~~gIP~~~ 402 (685)
-.|+.+++..||. |. .+ -+-.++... .+.|.|+-+
T Consensus 207 t~Gl~~gdLiIIAARPsmGKTafAlniA~n~A~~~g~~V~~ 247 (460)
T PRK07004 207 TSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAV 247 (460)
T ss_pred HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 23898775799973687642699999999998725886699
No 258
>PRK07263 consensus
Probab=91.77 E-value=0.48 Score=25.90 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=13.3
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 169983132112576543335556888723
Q gi|254780952|r 625 KCHLFYTINRRTHDFTRVERYQPSQVSQFL 654 (685)
Q Consensus 625 ~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl 654 (685)
.+-|..+++|++.-..-...+.+ +-+||.
T Consensus 417 ~~e~ivaKnR~G~~G~v~~~f~~-~~~rF~ 445 (453)
T PRK07263 417 TIEVILEKNRAGARGTVKLMFQK-EYNKFS 445 (453)
T ss_pred EEEEEEECCCCCCCEEEEEEEEC-CCCCCC
T ss_conf 17999976789986069999878-878721
No 259
>PRK08181 transposase; Validated
Probab=91.75 E-value=0.53 Score=25.61 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=6.3
Q ss_pred HHHHHHHHCCCCCE
Q ss_conf 88998752023320
Q gi|254780952|r 387 RKFEDAFLEQEIPH 400 (685)
Q Consensus 387 ~~l~~~L~~~gIP~ 400 (685)
+.+...+..+++|+
T Consensus 60 rr~~rrlk~A~fp~ 73 (269)
T PRK08181 60 RRIERHLAEAHLPP 73 (269)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999998689799
No 260
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.75 E-value=0.26 Score=27.80 Aligned_cols=39 Identities=28% Similarity=0.488 Sum_probs=24.3
Q ss_pred CCCCEEEEECC-CCCHHHHHHHHHHHHHHCCCCCHHH-EEEEEECHHH
Q ss_conf 98966999588-9883589999999999808999788-6762114799
Q gi|254780952|r 42 DDTPLLILAGA-GTGKTTVLIARMLHLICHKEIPPSK-ILAMTFTNQA 87 (685)
Q Consensus 42 ~~~~~lV~Aga-GsGKT~~L~~ri~~Ll~~~~~~p~~-Il~iTFT~~A 87 (685)
..|.++|+.|| |+|||+++ .+|+.. .|.. -.++++|-+.
T Consensus 5 ~~g~livisGPSG~GK~tl~----~~L~~~---~p~~~~~~vs~TTR~ 45 (208)
T PRK00300 5 RRGLLIVLSAPSGAGKSTLV----RALLER---DPNDLQLSVSATTRA 45 (208)
T ss_pred CCCCEEEEECCCCCCHHHHH----HHHHHH---CCCCEEEEEEEECCC
T ss_conf 18838999999988999999----999972---998689989746889
No 261
>pfam05872 DUF853 Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase.
Probab=91.74 E-value=0.96 Score=23.86 Aligned_cols=75 Identities=21% Similarity=0.292 Sum_probs=38.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC------HHHEEEEEECHHHHHHHHHHHHHHC-----------------
Q ss_conf 89669995889883589999999999808999------7886762114799999999999851-----------------
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLHLICHKEIP------PSKILAMTFTNQAIQEMKNRLACYL----------------- 99 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~------p~~Il~iTFT~~AA~el~~Ri~~~l----------------- 99 (685)
+.|=||.+.-|||||.||-- ++.-+...||+ ...+--|.-.-....-+.+|+...-
T Consensus 21 NRHGLiaGATGTGKTvTLq~-lAE~~S~~GVPvf~aDvKGDLsGia~~G~~~~kl~~R~~~~g~~~~~~~~~Pv~fwdl~ 99 (504)
T pfam05872 21 NRHGLIAGATGTGKTVTLQV-LAESFSDAGVPVFLADVKGDLSGIAAPGEPQDKLAARAASIGLDDYQPQAFPVIFWDLF 99 (504)
T ss_pred CCCCEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEECCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECC
T ss_conf 52166226577861789999-99987454993887105661432168899975799999971998888677987888657
Q ss_pred CCCCCEE-EEHHHHHHHHHH
Q ss_conf 6458789-617899999999
Q gi|254780952|r 100 GEKIPRI-QTFHSFCASILR 118 (685)
Q Consensus 100 ~~~~~~i-~T~Hsf~~~il~ 118 (685)
|+....| .|+-.|+=-+|.
T Consensus 100 g~~G~pvR~Tise~GPlLLs 119 (504)
T pfam05872 100 GEKGHPVRTTISEMGPLLLS 119 (504)
T ss_pred CCCCCEEEEEHHHCCHHHHH
T ss_conf 88897378645430689999
No 262
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=91.73 E-value=0.26 Score=27.73 Aligned_cols=60 Identities=25% Similarity=0.316 Sum_probs=30.8
Q ss_pred CCCCEE--EEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 989669--9958898835899999999998089997886762114799999999999851645878961
Q gi|254780952|r 42 DDTPLL--ILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQT 108 (685)
Q Consensus 42 ~~~~~l--V~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~T 108 (685)
..|-+. ....||||||+.|..-|..+ .. . -++.||-= .-.+..=-+|+++ .|..+..|.|
T Consensus 31 ~~g~~~lNfmsspGSGKT~LiEk~~~~~-~~-~---~K~Avi~G-D~~t~~DA~RlR~-~G~~a~~~nT 92 (225)
T TIGR00073 31 KEGLLVLNFMSSPGSGKTTLIEKLIERL-DD-E---VKIAVIEG-DVQTKNDADRLRK-YGVPAIQINT 92 (225)
T ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHH-CC-C---CCEEEEEC-CHHHHHHHHHHHH-CCCEEEEECC
T ss_conf 6597899802588611589999999984-57-8---97899975-5322556999986-4986886368
No 263
>KOG1131 consensus
Probab=91.67 E-value=0.98 Score=23.81 Aligned_cols=64 Identities=23% Similarity=0.240 Sum_probs=40.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHH-HHHHHCCCCCHHHEEEEEEC----HHHHHHHHHHH---HHHCCCCCCE
Q ss_conf 898966999588988358999999-99998089997886762114----79999999999---9851645878
Q gi|254780952|r 41 PDDTPLLILAGAGTGKTTVLIARM-LHLICHKEIPPSKILAMTFT----NQAIQEMKNRL---ACYLGEKIPR 105 (685)
Q Consensus 41 ~~~~~~lV~AgaGsGKT~~L~~ri-~~Ll~~~~~~p~~Il~iTFT----~~AA~el~~Ri---~~~l~~~~~~ 105 (685)
+..||+++.-+-|||||-+|..-| +|.+.. .-.+.+++.-|=| .||-.||+.=. .+.+|...+.
T Consensus 33 DakGh~llEMPSGTGKTvsLLSli~aYq~~~-p~~~~KliYCSRTvpEieK~l~El~~l~~y~~k~~g~~~~f 104 (755)
T KOG1131 33 DAKGHCLLEMPSGTGKTVSLLSLIIAYQLHY-PDEHRKLIYCSRTVPEIEKALEELKRLMDYREKHLGYPEPF 104 (755)
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 4578379977888873128999999999867-76333589963752689999999999999999852898750
No 264
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.66 E-value=0.13 Score=29.82 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=15.9
Q ss_pred CCC-EEEEECCCCCHHHHHHH
Q ss_conf 896-69995889883589999
Q gi|254780952|r 43 DTP-LLILAGAGTGKTTVLIA 62 (685)
Q Consensus 43 ~~~-~lV~AgaGsGKT~~L~~ 62 (685)
.++ ++|.|+||+|||+.+..
T Consensus 31 ~~~l~lv~APaG~GKTtl~a~ 51 (903)
T PRK04841 31 NYRLVLVRSPAGYGKTTLASQ 51 (903)
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 899799977999889999999
No 265
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=91.60 E-value=0.26 Score=27.74 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=25.9
Q ss_pred CCCEEEEECC----CCCHHHHHHHHHHHHHHCCCCCHHHEEEEE-EC
Q ss_conf 8966999588----988358999999999980899978867621-14
Q gi|254780952|r 43 DTPLLILAGA----GTGKTTVLIARMLHLICHKEIPPSKILAMT-FT 84 (685)
Q Consensus 43 ~~~~lV~Aga----GsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT-FT 84 (685)
+.++.|+|.+ |+|||+|-++-.++|-. .| .++|+|= +.
T Consensus 103 g~~~~VIAVaNqKGGvGKTTTavnLA~~LAl-~G---~RVLlID~LD 145 (388)
T PRK13705 103 DEFPPVIGVAAHKGGVYKTSVSVHLAQDLAL-KG---LRVLLVEGND 145 (388)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CC---CEEEEEECCC
T ss_conf 9987289995278885599999999999997-79---9089995878
No 266
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.57 E-value=0.13 Score=29.80 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=14.0
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 69995889883589999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARML 65 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~ 65 (685)
++|+++||||||| .+.+++
T Consensus 2 i~l~G~PGsGKgT-qa~~La 20 (194)
T cd01428 2 ILLLGPPGSGKGT-QAERLA 20 (194)
T ss_pred EEEECCCCCCHHH-HHHHHH
T ss_conf 8998999998799-999999
No 267
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.57 E-value=0.38 Score=26.63 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCCCCCHHHHHHCCCHHH----HHHHHCCCCCCEEEEECCCCCHHHHH
Q ss_conf 368321588876299889----99985389896699958898835899
Q gi|254780952|r 17 DFVPSCVPNYLKGLNAQQ----THAVTIPDDTPLLILAGAGTGKTTVL 60 (685)
Q Consensus 17 ~~~~~~~~~~l~~Ln~~Q----~~av~~~~~~~~lV~AgaGsGKT~~L 60 (685)
-|=|....++.- ++++ +.++....-.|+++.++||+|||++.
T Consensus 9 KYRP~~l~di~g--~~~~~~~L~~~i~~~~~phlLf~GppG~GKTt~a 54 (318)
T PRK00440 9 KYRPRSLDEVVG--QEEIVERLKSFVKEKNMPHLLFAGPPGTGKTTAA 54 (318)
T ss_pred CCCCCCHHHHCC--CHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 019898999419--6999999999998799866988895998899999
No 268
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=91.56 E-value=0.17 Score=29.04 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=32.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHH
Q ss_conf 9669995889883589999999999808999788676211479
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQ 86 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~ 86 (685)
.++|.+++-|+|||. |+.|+|.++ ++|.-.+=|.+||..
T Consensus 51 kNILmIGPTGvGKTe-IARrLAkl~---~aPFvkveATk~TEv 89 (442)
T PRK05201 51 KNILMIGPTGVGKTE-IARRLAKLA---NAPFIKVEATKFTEV 89 (442)
T ss_pred CCEEEECCCCCCHHH-HHHHHHHHH---CCCEEEEECCCCCCC
T ss_conf 316887888866789-999999984---898587521310003
No 269
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=91.54 E-value=0.12 Score=29.96 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=30.5
Q ss_pred HHHHCCCCCCCCCC-------CCCCCHHHHH---HCCCHHH-------HHHHHCCCCCCEE-EEECCCCCHHHHHHH
Q ss_conf 24212111232113-------6832158887---6299889-------9998538989669-995889883589999
Q gi|254780952|r 4 DDQKSHFSHILKGD-------FVPSCVPNYL---KGLNAQQ-------THAVTIPDDTPLL-ILAGAGTGKTTVLIA 62 (685)
Q Consensus 4 ~~~~~~~~~~~~~~-------~~~~~~~~~l---~~Ln~~Q-------~~av~~~~~~~~l-V~AgaGsGKT~~L~~ 62 (685)
+++-.+...+.+|+ |-|.+..++. +.+.+=| -+.- -+.+|.+| |.++||+|||||+--
T Consensus 62 q~~~~~~~~~~~d~~e~W~eKykP~~~~~lAvHK~Ki~~v~~wl~a~~Le~~-~~rGGs~LLi~GPsGCgKsT~~k~ 137 (670)
T TIGR00602 62 QDKGLELSSLKEDRNELWVEKYKPETQEELAVHKKKIEEVEEWLKAQVLESA-KKRGGSILLITGPSGCGKSTTIKI 137 (670)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 4221103431135787441026754245776647779999999752002045-667753788417558844789999
No 270
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.53 E-value=0.24 Score=27.95 Aligned_cols=68 Identities=10% Similarity=0.217 Sum_probs=31.0
Q ss_pred HHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHH----CCCCCHHHHHH
Q ss_conf 42057664067876126751467875202444343201012222102355674488731553100----00000013666
Q gi|254780952|r 291 FQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSE----LSTIIQEIINI 366 (685)
Q Consensus 291 f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~E----a~~Ia~~I~~l 366 (685)
..+.+|+++.+.|-.-=| +.++.+.-.. . .+.|..-.++...++ |+.+.+..+.+
T Consensus 156 I~~NhPev~livLLIDER-PEEVTdm~r~---------------v-----~gEVvaSTfD~~~~~h~~vAel~lerAkrl 214 (379)
T PRK12608 156 VAANHPDIHLMVLLIDER-PEEVTDMKRS---------------V-----KGEVYASTFDRPYDRHIRVAELVLERAKRL 214 (379)
T ss_pred HHHCCCCCEEEEEECCCC-CHHHHHHHHH---------------C-----CEEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 985799848999981689-3588888862---------------3-----707999779899899999999999999999
Q ss_pred HHHCCCCCHHHHEECC
Q ss_conf 5311365303111010
Q gi|254780952|r 367 QNTGMSLNNIAILVRT 382 (685)
Q Consensus 367 ~~~g~~~~diAVL~Rt 382 (685)
.+.| .|+.||.=+
T Consensus 215 vE~G---~dVvillDS 227 (379)
T PRK12608 215 VEEG---KDVVILLDS 227 (379)
T ss_pred HHCC---CCEEEEECC
T ss_conf 8769---968999651
No 271
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=91.48 E-value=0.87 Score=24.15 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=34.4
Q ss_pred CCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC----CCCCHHHEEEEEECHHHHHHHHHH
Q ss_conf 99889999853898966999588988358999999999980----899978867621147999999999
Q gi|254780952|r 30 LNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICH----KEIPPSKILAMTFTNQAIQEMKNR 94 (685)
Q Consensus 30 Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~----~~~~p~~Il~iTFT~~AA~el~~R 94 (685)
||-.+ |.. .+.+++|.||-|||||. +||+-. ...+-++|++=|-|..==+.+-++
T Consensus 7 ~~~~~--a~~--~~~v~lVEAGTGTGKSL------AYLvPAl~~a~~~~g~rVVISTaT~aLQeQL~~k 65 (636)
T TIGR03117 7 LNCLT--SLR--QKRIGMLEASTGVGKTL------AMIMAALTMLKERPDQKIAIAVPTLALMGQLWSE 65 (636)
T ss_pred HHHHH--HHH--CCCEEEEECCCCCCHHH------HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
T ss_conf 98999--860--38489998999710889------9999999999857999889979879999999766
No 272
>KOG0924 consensus
Probab=91.44 E-value=0.56 Score=25.46 Aligned_cols=53 Identities=23% Similarity=0.164 Sum_probs=30.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHC
Q ss_conf 96699958898835899999999998089997886762114799999999999851
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYL 99 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l 99 (685)
.-++|++--|||||+-|+. ||...+-.+.+-|-|.---|.||-.+..|+..-.
T Consensus 372 ~vvvivgETGSGKTTQl~Q---yL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM 424 (1042)
T KOG0924 372 QVVVIVGETGSGKTTQLAQ---YLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEM 424 (1042)
T ss_pred CEEEEEECCCCCCHHHHHH---HHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 5799993588985016679---9986224558715435722789999999999985
No 273
>PRK06321 replicative DNA helicase; Provisional
Probab=91.43 E-value=0.56 Score=25.45 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=8.0
Q ss_pred HCCCCCHHHHEE
Q ss_conf 113653031110
Q gi|254780952|r 369 TGMSLNNIAILV 380 (685)
Q Consensus 369 ~g~~~~diAVL~ 380 (685)
.|+.+++..||.
T Consensus 221 ~Gl~~Gdlivia 232 (472)
T PRK06321 221 NGFSPSNLMILA 232 (472)
T ss_pred CCCCCCCEEEEE
T ss_conf 598867579985
No 274
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=91.39 E-value=0.62 Score=25.18 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=27.5
Q ss_pred CCEEEEECCCCCHHHH-HHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHH
Q ss_conf 9669995889883589-9999999998089997886762114799999999
Q gi|254780952|r 44 TPLLILAGAGTGKTTV-LIARMLHLICHKEIPPSKILAMTFTNQAIQEMKN 93 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~-L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~ 93 (685)
+.++|-||.|+|||.. |+--+.+-.. ..++|++-|.|..=-+.+-+
T Consensus 48 ~~l~iEAgTGtGKTlaYL~Pai~~a~~----~~~~vvIST~T~~LQeQL~~ 94 (697)
T PRK11747 48 HILVIEAGTGVGKSLAYLLAGIPIARA----EKKKLVISTATVALQEQLVH 94 (697)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH----CCCCEEEECCCHHHHHHHHH
T ss_conf 669998999720899999999999998----29979998898899999987
No 275
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=91.37 E-value=0.32 Score=27.14 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=34.6
Q ss_pred CCCCCCCCCCC--CHH---HHHHCCCHHHHHHHH-CCCCCCEEEEECCCCCHHHHH
Q ss_conf 12321136832--158---887629988999985-389896699958898835899
Q gi|254780952|r 11 SHILKGDFVPS--CVP---NYLKGLNAQQTHAVT-IPDDTPLLILAGAGTGKTTVL 60 (685)
Q Consensus 11 ~~~~~~~~~~~--~~~---~~l~~Ln~~Q~~av~-~~~~~~~lV~AgaGsGKT~~L 60 (685)
..+++-||+|+ .++ +=++.|-..=+.++. ...--+++|-+-+|||||.|-
T Consensus 5 ~~~L~~dY~Pden~i~hRdeqI~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt 60 (383)
T TIGR02928 5 RDLLEPDYVPDENRIVHRDEQIEELAKALRPILRPGSRPSNIFIYGKTGTGKTAVT 60 (383)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 22377577027424668678999999998875067489872588788898788999
No 276
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=91.37 E-value=0.14 Score=29.52 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=15.3
Q ss_pred HHHHHH-HHHHHHHHHHHHHEE
Q ss_conf 787899-999999985864116
Q gi|254780952|r 606 GNVEGE-RRLAYVGITRAKKKC 626 (685)
Q Consensus 606 ~~~eEE-rRL~YVA~TRAk~~L 626 (685)
..+++| +|+.--|-.||++-|
T Consensus 543 ~~ID~EV~~ii~eay~~A~~iL 564 (644)
T PRK10733 543 RIIDQEVKALIERNYNRARQLL 564 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999
No 277
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.29 E-value=0.22 Score=28.32 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=21.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 9995889883589999999999808999788676211
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
=|.+.||+|||+.+-.-+.++. +.+ .++.+|+.
T Consensus 3 GitG~pGaGKStLi~~l~~~~~-~~g---~~VaVlav 35 (148)
T cd03114 3 GITGVPGAGKSTLIDALITALR-ARG---KRVAVLAI 35 (148)
T ss_pred EECCCCCCCHHHHHHHHHHHHH-HCC---CEEEEEEE
T ss_conf 6258997878999999999999-789---83799996
No 278
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.20 E-value=0.55 Score=25.50 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=6.2
Q ss_pred HHHHCCCCCEEEE
Q ss_conf 8752023320320
Q gi|254780952|r 391 DAFLEQEIPHKVI 403 (685)
Q Consensus 391 ~~L~~~gIP~~~~ 403 (685)
+.|..-.|+....
T Consensus 238 dlLld~dI~lV~L 250 (436)
T COG1875 238 DLLLDDDIDLVSL 250 (436)
T ss_pred HHHCCCCCCEEEE
T ss_conf 9863877784886
No 279
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=91.14 E-value=1.1 Score=23.45 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=6.6
Q ss_pred CEEEEEECHHH
Q ss_conf 75999953068
Q gi|254780952|r 265 ARICCVGDENQ 275 (685)
Q Consensus 265 ~~l~vVGD~dQ 275 (685)
.+|+|.||+-.
T Consensus 321 ~sv~V~~~~~~ 331 (789)
T PRK13853 321 LSLCVYADDLN 331 (789)
T ss_pred EEEEEECCCHH
T ss_conf 89999829999
No 280
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.10 E-value=0.2 Score=28.60 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=8.4
Q ss_pred CCCHHHHHHHCCCCCC
Q ss_conf 6630245753046875
Q gi|254780952|r 425 QEHRDEDFKRIINCPK 440 (685)
Q Consensus 425 ~p~d~~a~~~il~~p~ 440 (685)
+|-+..++.++|..|+
T Consensus 310 ~~L~~~~L~~ILtePk 325 (411)
T PRK05342 310 EELDEEALVRILTEPK 325 (411)
T ss_pred CCCCHHHHHHHHCCCC
T ss_conf 4479999999965874
No 281
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.09 E-value=0.53 Score=25.61 Aligned_cols=68 Identities=22% Similarity=0.432 Sum_probs=43.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCH----HHEEEEEECHHHH-----HHHHHHHHHHCCC----CC---CEEE
Q ss_conf 96699958898835899999999998089997----8867621147999-----9999999985164----58---7896
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPP----SKILAMTFTNQAI-----QEMKNRLACYLGE----KI---PRIQ 107 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p----~~Il~iTFT~~AA-----~el~~Ri~~~l~~----~~---~~i~ 107 (685)
.+.++++-||.|||. +++-+|..|.++.||+ .+|+.|-...--| .|+-+|+...+.+ .. ..|-
T Consensus 195 NNpiLVGepGVGKTA-IvEGLA~rI~~g~VP~~L~~~~i~~LDlg~LvAGtkyRGeFEeRlk~ii~ev~~~~~~iILFID 273 (852)
T TIGR03346 195 NNPVLIGEPGVGKTA-IVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFID 273 (852)
T ss_pred CCCCEECCCCCCHHH-HHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf 897212799987999-9999999986699997885185127528877521530078999999999999858998799961
Q ss_pred EHHHH
Q ss_conf 17899
Q gi|254780952|r 108 TFHSF 112 (685)
Q Consensus 108 T~Hsf 112 (685)
-+|.+
T Consensus 274 EiHtl 278 (852)
T TIGR03346 274 ELHTL 278 (852)
T ss_pred HHHHH
T ss_conf 25553
No 282
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.08 E-value=0.2 Score=28.47 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=19.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 6999588988358999999999980899978867621
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
+.|.++.|||||| ++.+++..+.. .++.+|+
T Consensus 2 IgI~G~sgsGKTT-~a~~L~~~l~~-----~~v~~i~ 32 (198)
T cd02023 2 IGIAGGSGSGKTT-VAEEIIEQLGN-----PKVVIIS 32 (198)
T ss_pred EEEECCCCCCHHH-HHHHHHHHHCC-----CCEEEEE
T ss_conf 8988999885999-99999998099-----9858997
No 283
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=91.08 E-value=0.16 Score=29.21 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=21.9
Q ss_pred EEEECCCC-CHHHHHHHHHHHHHHCCCCCHHHEE
Q ss_conf 99958898-8358999999999980899978867
Q gi|254780952|r 47 LILAGAGT-GKTTVLIARMLHLICHKEIPPSKIL 79 (685)
Q Consensus 47 lV~AgaGs-GKT~~L~~ri~~Ll~~~~~~p~~Il 79 (685)
-.+|.+|| ||||| |.-|+.++.+-|.+|.=|+
T Consensus 109 ~~iaVaGtHGKTTT-Tamia~~~~~aGLdPt~~~ 141 (491)
T TIGR01082 109 ESIAVAGTHGKTTT-TAMIAVILKEAGLDPTVIV 141 (491)
T ss_pred CEEEEECCCCCHHH-HHHHHHHHHHCCCCCCEEE
T ss_conf 70799836872568-9999999984499976898
No 284
>pfam02534 TraG TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.
Probab=91.02 E-value=0.085 Score=31.10 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 89669995889883589999999999808999788676211
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
..|++|+|++|||||...+ |=.|+.. +..++++--
T Consensus 44 ~~H~lviaptgsGKt~~~V--iPnLl~~----~~S~VV~Dp 78 (468)
T pfam02534 44 FSHVLVFAGTGSGKGVGVV--IPNLLVW----KGSIVVLDP 78 (468)
T ss_pred CCEEEEECCCCCCCCCCCH--HHHHHHC----CCCEEEEEC
T ss_conf 7679998489997234242--9888518----997899948
No 285
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=90.98 E-value=0.1 Score=30.58 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=28.0
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHH
Q ss_conf 10253210775113468878775111126788759999530688631
Q gi|254780952|r 233 IPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYE 279 (685)
Q Consensus 233 ~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~ 279 (685)
.+.++|||||=..+.+..++..+.. ...++++|||.|+-|-
T Consensus 60 ~~~~iiDE~~~~~~g~l~~~~~~~~------~~~~~l~GDp~Q~~~~ 100 (226)
T pfam01443 60 GKILILDEYTLLPPGYILLLAAISG------AKLVILFGDPLQIPYH 100 (226)
T ss_pred CCEEEECCCCCCCHHHHHHHHHCCC------CCEEEEECCCCCCCCC
T ss_conf 7889989645668168999876068------8679998287616477
No 286
>PRK13764 ATPase; Provisional
Probab=90.95 E-value=0.57 Score=25.39 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=5.1
Q ss_pred HHCCCCCHHHHH
Q ss_conf 000000001366
Q gi|254780952|r 354 SELSTIIQEIIN 365 (685)
Q Consensus 354 ~Ea~~Ia~~I~~ 365 (685)
.|.+.|+++|.+
T Consensus 180 ~el~~ia~eIle 191 (605)
T PRK13764 180 YELEEIAREILE 191 (605)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 287
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=90.91 E-value=0.9 Score=24.06 Aligned_cols=74 Identities=22% Similarity=0.265 Sum_probs=43.9
Q ss_pred CHHHHHHHHCC---CC-C-CEEEEECCCCCHHHHHHHHHHHHHHCC-CCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98899998538---98-9-669995889883589999999999808-999788676211479999999999985164587
Q gi|254780952|r 31 NAQQTHAVTIP---DD-T-PLLILAGAGTGKTTVLIARMLHLICHK-EIPPSKILAMTFTNQAIQEMKNRLACYLGEKIP 104 (685)
Q Consensus 31 n~~Q~~av~~~---~~-~-~~lV~AgaGsGKT~~L~~ri~~Ll~~~-~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~ 104 (685)
.+.|..|.... .. + -+.+.|+-|+|||.+-+.-..+++.+. ...+.-|.+++| +.+.+.|..|+....+....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~-~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPF-RTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCH-HHHHHHHHHHHHHHHCCCCC
T ss_conf 35567999998732255751899916888719999999999753113545628996558-99999999999875123554
Q ss_pred E
Q ss_conf 8
Q gi|254780952|r 105 R 105 (685)
Q Consensus 105 ~ 105 (685)
.
T Consensus 276 ~ 276 (733)
T COG1203 276 I 276 (733)
T ss_pred C
T ss_conf 3
No 288
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.90 E-value=0.27 Score=27.67 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=14.6
Q ss_pred CEE-EEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 669-99588988358999999999980
Q gi|254780952|r 45 PLL-ILAGAGTGKTTVLIARMLHLICH 70 (685)
Q Consensus 45 ~~l-V~AgaGsGKT~~L~~ri~~Ll~~ 70 (685)
|++ +.+-||||||+ ++.-.+.+|..
T Consensus 2 pLiIlTGyPgsGKTt-fakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTT-FAKELAKELRQ 27 (261)
T ss_pred CEEEEECCCCCCCHH-HHHHHHHHHHH
T ss_conf 569982699988017-89999999997
No 289
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.88 E-value=0.35 Score=26.88 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=19.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 989669995889883589999999999
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
.++..+|.||||+|||+.|.. +++-+
T Consensus 15 kGQR~gI~g~~gvGKT~Ll~~-i~~~~ 40 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQS-IANAI 40 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHH-HHHHH
T ss_conf 786778878999889999999-99999
No 290
>PRK06749 replicative DNA helicase; Provisional
Probab=90.87 E-value=0.93 Score=23.97 Aligned_cols=33 Identities=12% Similarity=0.021 Sum_probs=16.7
Q ss_pred HCCCCCHHHHEE-CCC----HHHHHHHHHHHCCCCCEE
Q ss_conf 113653031110-100----147889987520233203
Q gi|254780952|r 369 TGMSLNNIAILV-RTS----WQTRKFEDAFLEQEIPHK 401 (685)
Q Consensus 369 ~g~~~~diAVL~-Rtn----~~~~~l~~~L~~~gIP~~ 401 (685)
.|..+++..||. |.. +-+..++......|.|+-
T Consensus 181 ~Gl~~g~LiviaaRPsmGKTa~alnia~~~a~~g~~v~ 218 (428)
T PRK06749 181 CGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVG 218 (428)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 49998868999627989768999999999996499279
No 291
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=90.85 E-value=0.47 Score=26.01 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=27.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CCHHHEEEEE
Q ss_conf 89896699958898835899999999998089-9978867621
Q gi|254780952|r 41 PDDTPLLILAGAGTGKTTVLIARMLHLICHKE-IPPSKILAMT 82 (685)
Q Consensus 41 ~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~-~~p~~Il~iT 82 (685)
.+.-|+-..+.||||||++. .|.+.++..-| +..++++.+|
T Consensus 56 ~P~lhm~ftG~PGtGkttva-~~m~~~l~~lGy~r~G~~~~~t 97 (284)
T TIGR02880 56 APSLHMSFTGNPGTGKTTVA-LRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CCCEEEEECCCCCCCHHHHH-HHHHHHHHHCCCCCCCCEEEEE
T ss_conf 88326775168987248999-9999999871540036267853
No 292
>pfam02689 Herpes_Helicase Helicase. This family consists of Helicases from the Herpes viruses. Helicases are responsible for the unwinding of DNA and are essential for replication and completion of the viral life cycle.
Probab=90.82 E-value=0.42 Score=26.33 Aligned_cols=59 Identities=25% Similarity=0.235 Sum_probs=37.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEH-HHHHHH
Q ss_conf 66999588988358999999999980899978867621147999999999998516458789617-899999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQTF-HSFCAS 115 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~T~-Hsf~~~ 115 (685)
..||.+-||||||+.+..-.+.| +-++.-=|+-||++|-.++... ....|-|| |.|+++
T Consensus 62 ~ylITGtAGaGKSTsIq~L~~~L---------dCvITGaT~VAAQNls~~L~~~---~S~~~~TIf~~FGFk 121 (801)
T pfam02689 62 AYLITGTAGAGKSTSIQTLNENL---------DCLITGATRVAAQNLSAKLSRA---YSAYCPTIFQAFGFK 121 (801)
T ss_pred EEEEECCCCCCCHHHHHHHHHHC---------CEEEECCHHHHHHHHHHHHHHC---CCCCCCCHHHHHCCC
T ss_conf 89995378887051899999753---------9289561589988999986213---567686266652877
No 293
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.79 E-value=0.62 Score=25.14 Aligned_cols=68 Identities=24% Similarity=0.408 Sum_probs=43.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCH----HHEEEEEECHHHH-----HHHHHHHHHHCCC----CC---CEEE
Q ss_conf 96699958898835899999999998089997----8867621147999-----9999999985164----58---7896
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPP----SKILAMTFTNQAI-----QEMKNRLACYLGE----KI---PRIQ 107 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p----~~Il~iTFT~~AA-----~el~~Ri~~~l~~----~~---~~i~ 107 (685)
.+.++++-||-|||. +++-+|..|.++.||+ .+|+.|-...--| .|+-+|+...+.+ .. ..|-
T Consensus 209 NNPiLVGepGVGKTA-IvEGLA~rI~~g~VP~~L~~~~i~sLDlg~LvAGtkyRGeFEeRlk~ii~ei~~~~~~iILFID 287 (852)
T TIGR03345 209 NNPILTGEAGVGKTA-VVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFID 287 (852)
T ss_pred CCCEEECCCCCCHHH-HHHHHHHHHHCCCCCHHHHCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 997465799987999-9999999997699986774385678678888640357635999999999999848997699963
Q ss_pred EHHHH
Q ss_conf 17899
Q gi|254780952|r 108 TFHSF 112 (685)
Q Consensus 108 T~Hsf 112 (685)
-+|.+
T Consensus 288 EiHtl 292 (852)
T TIGR03345 288 EAHTL 292 (852)
T ss_pred HHHHH
T ss_conf 48775
No 294
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=90.78 E-value=0.36 Score=26.81 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=14.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 6999588988358999999999980
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICH 70 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~ 70 (685)
+.++--|.+ ++..+.....++-..
T Consensus 121 L~~~~~~~~-~~~~~~~~~~~~~~~ 144 (931)
T TIGR00929 121 LTLVYKPDS-KTAVLEKFLKKLAKK 144 (931)
T ss_pred EEEEEECCC-HHHHHHHHHHHHCCC
T ss_conf 999984661-245788988763010
No 295
>PRK00279 adk adenylate kinase; Reviewed
Probab=90.72 E-value=0.17 Score=29.00 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=14.3
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 69995889883589999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARML 65 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~ 65 (685)
++++++|||||+| .+.+++
T Consensus 3 iillG~PGsGKgT-qa~~la 21 (215)
T PRK00279 3 LILLGPPGAGKGT-QAKFIA 21 (215)
T ss_pred EEEECCCCCCHHH-HHHHHH
T ss_conf 9998999998799-999999
No 296
>PRK04040 adenylate kinase; Provisional
Probab=90.66 E-value=0.25 Score=27.82 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=13.9
Q ss_pred CEEEEECCCCCHHHHHHH
Q ss_conf 669995889883589999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIA 62 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ 62 (685)
-++|++.||+|||+++..
T Consensus 4 ~VvvtGiPGvGKTTv~~~ 21 (189)
T PRK04040 4 VVVVTGVPGVGKTTVLNK 21 (189)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 899975898878999999
No 297
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=90.52 E-value=1.2 Score=23.26 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=19.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 989669995889883589999999999
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
.+...+|.|++|+|||+.+..-+.+..
T Consensus 68 kGQR~~I~~~~g~GKt~ll~~ii~~~~ 94 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIA 94 (274)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 785778757999982368999999998
No 298
>KOG0342 consensus
Probab=90.51 E-value=0.82 Score=24.33 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=43.1
Q ss_pred HCCCHHHHHHHHCC-CCCCEEEEECCCCCHHHHH-HHHHHHHHHCCCCC---HHHEEEEEECHHHHHHHHHHHHHHC
Q ss_conf 62998899998538-9896699958898835899-99999999808999---7886762114799999999999851
Q gi|254780952|r 28 KGLNAQQTHAVTIP-DDTPLLILAGAGTGKTTVL-IARMLHLICHKEIP---PSKILAMTFTNQAIQEMKNRLACYL 99 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L-~~ri~~Ll~~~~~~---p~~Il~iTFT~~AA~el~~Ri~~~l 99 (685)
..|++-|...+.-. .+.-+++.|--|||||... +-.|..++.. .-. +=.+++++-||--|.....-+..++
T Consensus 103 ~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~-~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll 178 (543)
T KOG0342 103 ETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKL-KFKPRNGTGVLIICPTRELAMQIFAEAKELL 178 (543)
T ss_pred CCCHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEHHHHHHHHHHC-CCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 300288874267667984312451268874101046899999853-6577787148996562899998999999999
No 299
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=90.49 E-value=0.33 Score=27.08 Aligned_cols=41 Identities=29% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCCEEEEECC----CCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHH
Q ss_conf 8966999588----98835899999999998089997886762114799
Q gi|254780952|r 43 DTPLLILAGA----GTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQA 87 (685)
Q Consensus 43 ~~~~lV~Aga----GsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~A 87 (685)
+.++.|+|.+ |+|||+|-++-..+|-.. | .++|+|=+--.|
T Consensus 101 g~~~~VIav~N~KGGVGKTTtav~LA~~LA~~-G---~RVLvIDLDPQa 145 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTSAHLAQYLALR-G---YRVLAIDLDPQA 145 (387)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-C---CCEEEEECCCHH
T ss_conf 99880899978887656999999999999977-9---988999537016
No 300
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=90.41 E-value=0.35 Score=26.88 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=14.5
Q ss_pred EEEEECC----CCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 6999588----9883589999999999808999788676211
Q gi|254780952|r 46 LLILAGA----GTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 46 ~lV~Aga----GsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
+.|+|.+ |+|||+|-++-..+|-. .| .++|+|=.
T Consensus 121 ~kVIaVaN~KGGVGKTTtav~LA~~LA~-~G---~RVLlIDL 158 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLAL-QG---YRVLAVDL 158 (405)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHH-CC---CCEEEEEC
T ss_conf 8289997888776599999999999997-79---98899964
No 301
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=90.40 E-value=0.39 Score=26.56 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEE
Q ss_conf 896699958898835899999999998089997886762
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAM 81 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~i 81 (685)
..|+.|.|..|||||.|..--+..|+...++ .|+++
T Consensus 23 ~rH~aIlg~TGsGKS~tv~vLl~~l~~~~~~---~vlVf 58 (218)
T pfam01935 23 SRHFAILGSTGSGKSNTVAVLLEELLEKKGA---TVLIF 58 (218)
T ss_pred HHHEEEECCCCCCHHHHHHHHHHHHHHCCCC---CEEEE
T ss_conf 4214787269997699999999999854799---78998
No 302
>PRK05636 replicative DNA helicase; Provisional
Probab=90.39 E-value=0.79 Score=24.44 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=12.3
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 69983132112576543335556888723
Q gi|254780952|r 626 CHLFYTINRRTHDFTRVERYQPSQVSQFL 654 (685)
Q Consensus 626 L~l~~~~~~~~~~~~~~~~~~~~~~SrFl 654 (685)
.-|..+++|++.-..-...+.+ +-+||.
T Consensus 475 ~elivaKnRnG~~G~v~l~f~~-~~~rF~ 502 (507)
T PRK05636 475 ADIILAKHRGGPIDTVQVAHQL-HYSRFV 502 (507)
T ss_pred EEEEEECCCCCCCEEEEEEEEC-CCCCHH
T ss_conf 6999972688985169999845-867422
No 303
>PRK06761 hypothetical protein; Provisional
Probab=90.26 E-value=0.36 Score=26.75 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=18.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6999588988358999999999980899
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
.+|-+-||||||||. +++..+|...|.
T Consensus 5 IiIEGlPGsGKSTta-~~l~d~L~~~g~ 31 (281)
T PRK06761 5 IIIEGLPGFGKSTTA-HLLNDKLSQLKI 31 (281)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHHCCC
T ss_conf 999668999801499-999999986698
No 304
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=90.25 E-value=0.18 Score=28.84 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=14.4
Q ss_pred CCEEEE-ECCCCCHHHHHHHHHHH
Q ss_conf 966999-58898835899999999
Q gi|254780952|r 44 TPLLIL-AGAGTGKTTVLIARMLH 66 (685)
Q Consensus 44 ~~~lV~-AgaGsGKT~~L~~ri~~ 66 (685)
|=++|. ++-||||||.|+- |.-
T Consensus 31 GEiViltGPSGSGKTTLLtL-iG~ 53 (220)
T TIGR02982 31 GEIVILTGPSGSGKTTLLTL-IGG 53 (220)
T ss_pred CEEEEEECCCCCCHHHHHHH-HHH
T ss_conf 64798437889846889998-876
No 305
>PRK05480 uridine kinase; Provisional
Probab=90.22 E-value=0.27 Score=27.68 Aligned_cols=34 Identities=26% Similarity=0.528 Sum_probs=19.9
Q ss_pred CCEE--EEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 9669--995889883589999999999808999788676211
Q gi|254780952|r 44 TPLL--ILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 44 ~~~l--V~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
.|++ |.+|.|||||+ ++.+++..+. ..++.+|+.
T Consensus 5 ~P~iIgIaG~SgSGKTT-~a~~L~~~l~-----~~~v~vi~~ 40 (209)
T PRK05480 5 QPIIIGIAGGSGSGKTT-VASTIYEELG-----DESIAVISQ 40 (209)
T ss_pred CCEEEEEECCCCCCHHH-HHHHHHHHCC-----CCCEEEEEC
T ss_conf 98899998999778999-9999999808-----687599955
No 306
>KOG4284 consensus
Probab=90.06 E-value=0.15 Score=29.42 Aligned_cols=86 Identities=20% Similarity=0.132 Sum_probs=52.9
Q ss_pred CHHHHHHHHCCCCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC----CCC-C
Q ss_conf 98899998538989-66999588988358999999999980899978867621147999999999998516----458-7
Q gi|254780952|r 31 NAQQTHAVTIPDDT-PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG----EKI-P 104 (685)
Q Consensus 31 n~~Q~~av~~~~~~-~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~----~~~-~ 104 (685)
++-|-.||-.-..+ -++|.|--|||||-+..--++.-+.. ....-+++++|-||--|-.+++-+.+... ..+ +
T Consensus 49 tkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csv 127 (980)
T KOG4284 49 TKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSV 127 (980)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEHHCCC-CCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 70134321144315535898137888558998543022275-66762069971435664579999998652445760589
Q ss_pred EE-EEHHHHHHHHH
Q ss_conf 89-61789999999
Q gi|254780952|r 105 RI-QTFHSFCASIL 117 (685)
Q Consensus 105 ~i-~T~Hsf~~~il 117 (685)
.| ||=|+.-..=|
T Consensus 128 fIGGT~~~~d~~rl 141 (980)
T KOG4284 128 FIGGTAHKLDLIRL 141 (980)
T ss_pred EECCCHHHHHHHHH
T ss_conf 96685435556665
No 307
>COG3911 Predicted ATPase [General function prediction only]
Probab=90.00 E-value=0.22 Score=28.25 Aligned_cols=18 Identities=44% Similarity=0.781 Sum_probs=13.8
Q ss_pred CEEEEECCCCCHHHHHHH
Q ss_conf 669995889883589999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIA 62 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ 62 (685)
-..+.+|||+|||+.|..
T Consensus 11 ~fIltGgpGaGKTtLL~a 28 (183)
T COG3911 11 RFILTGGPGAGKTTLLAA 28 (183)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 899837999768999999
No 308
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.00 E-value=0.69 Score=24.86 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=10.9
Q ss_pred HHHHHCCCCCCCEEEEEEC
Q ss_conf 4221115458936999611
Q gi|254780952|r 559 ENLGSFIPDSNCIQIMTLH 577 (685)
Q Consensus 559 ~~~~~~~~~~d~V~i~TIH 577 (685)
+..+....=.|+|.|||-.
T Consensus 588 D~~Gr~vdF~NtiIImTSN 606 (758)
T PRK11034 588 DNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred CCCCCEEECEEEEEEEECC
T ss_conf 7999988440019998256
No 309
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=89.99 E-value=1.1 Score=23.54 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=26.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCC-----H---HHEEE--EEECHHHHHHHHHHHH
Q ss_conf 69995889883589999999999808999-----7---88676--2114799999999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIP-----P---SKILA--MTFTNQAIQEMKNRLA 96 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~-----p---~~Il~--iTFT~~AA~el~~Ri~ 96 (685)
+-+++=||||||+ |+..+..-|...+.+ . +..+. +.||.+...+.-.|+.
T Consensus 5 iW~TGLsGsGKTT-lA~~l~~~L~~~~~~~~~LDGD~~R~~l~~dlgys~~~R~~n~~r~~ 64 (157)
T pfam01583 5 VWFTGLSGSGKST-IANALERKLFAQGISVYVLDGDNVRHGLNKDLGFSEEDRTENIRRIA 64 (157)
T ss_pred EEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9988989999999-99999999997599779976887750125777989899999999999
No 310
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=89.89 E-value=0.27 Score=27.67 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=17.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 96699958898835899999999
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~ 66 (685)
.|+|..++||=|||| |++=||.
T Consensus 31 DH~LL~GPPGLGKTT-LA~IiA~ 52 (305)
T TIGR00635 31 DHLLLYGPPGLGKTT-LAHIIAN 52 (305)
T ss_pred CCEEEECCCCCCHHH-HHHHHHH
T ss_conf 416631756874678-9999999
No 311
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757 The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase is an essential enzyme in this process which links the tripeptide to UDP-N-acetylmuramate.; GO: 0016874 ligase activity, 0007047 cell wall organization and biogenesis.
Probab=89.85 E-value=0.27 Score=27.62 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=18.9
Q ss_pred EEEECCCC-CHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99958898-83589999999999808999788
Q gi|254780952|r 47 LILAGAGT-GKTTVLIARMLHLICHKEIPPSK 77 (685)
Q Consensus 47 lV~AgaGs-GKT~~L~~ri~~Ll~~~~~~p~~ 77 (685)
=|+|.+|| |||||-. =+++.|+..|..|.=
T Consensus 104 WVlaV~GTHGKTTT~~-M~~WvLE~~G~~pGF 134 (459)
T TIGR01081 104 WVLAVAGTHGKTTTAS-MLAWVLEQCGLKPGF 134 (459)
T ss_pred EEEEEECCCCCHHHHH-HHHHHHHHCCCCCCC
T ss_conf 2789507886046889-999999863798872
No 312
>KOG3347 consensus
Probab=89.82 E-value=0.31 Score=27.19 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=16.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 66999588988358999999999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHL 67 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~L 67 (685)
+.+|.+-||+|||+ +..+++.+
T Consensus 9 NILvtGTPG~GKst-l~~~lae~ 30 (176)
T KOG3347 9 NILVTGTPGTGKST-LAERLAEK 30 (176)
T ss_pred CEEEECCCCCCCHH-HHHHHHHH
T ss_conf 87986799988025-99999997
No 313
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.79 E-value=0.63 Score=25.13 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=18.6
Q ss_pred CCCEEHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 1221025321077511-34688787751
Q gi|254780952|r 230 HEKIPYIMVDEYQDIN-TPQYLLLRLLC 256 (685)
Q Consensus 230 ~~r~~~ilVDEfQDtn-~~Q~~ll~~L~ 256 (685)
..+|+.|++||....+ .+|..|++.|-
T Consensus 123 ~~~~KiiIlDEad~lt~~Aq~aLlk~lE 150 (337)
T PRK12402 123 SADYKLILFDNAEALREDAQQALRRIME 150 (337)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7880499970713179999999998874
No 314
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=89.77 E-value=0.5 Score=25.83 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=26.6
Q ss_pred CCCEEEEEC----CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE-ECHH
Q ss_conf 896699958----8988358999999999980899978867621-1479
Q gi|254780952|r 43 DTPLLILAG----AGTGKTTVLIARMLHLICHKEIPPSKILAMT-FTNQ 86 (685)
Q Consensus 43 ~~~~lV~Ag----aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT-FT~~ 86 (685)
+.+..|+|. -|+|||+|-++-..+|-.. | .++|+|= +.-.
T Consensus 103 ~~~~~VIAVaN~KGGVGKTTTavnLA~~LAl~-G---~RVL~ID~lDPQ 147 (387)
T PHA02519 103 DKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQ-G---HRVLLIEGNDPQ 147 (387)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC-C---CCEEEEECCCCC
T ss_conf 88752899861688776999999999999976-9---968999598852
No 315
>KOG0350 consensus
Probab=89.76 E-value=0.85 Score=24.23 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=45.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 89669995889883589999999999808999788676211479999999999985164587896
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQ 107 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~ 107 (685)
.|-+.|.|.-|||||-.-+--|+.+|.++.++-=+-++|--|+--|....+-+..+.......|+
T Consensus 183 ~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~ 247 (620)
T KOG0350 183 PRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVC 247 (620)
T ss_pred CCCEEEECCCCCCCEEEEHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 77547755789884566513789997038734057999954799999999999985668865988
No 316
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=89.68 E-value=0.39 Score=26.57 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=5.6
Q ss_pred CEEEEEECHHH
Q ss_conf 75999953068
Q gi|254780952|r 265 ARICCVGDENQ 275 (685)
Q Consensus 265 ~~l~vVGD~dQ 275 (685)
.+|+|.||.-.
T Consensus 340 ~sl~v~~~s~~ 350 (800)
T PRK13898 340 LTILCSEKSIK 350 (800)
T ss_pred EEEEEECCCHH
T ss_conf 99999879999
No 317
>PTZ00088 adenylate kinase 1; Provisional
Probab=89.65 E-value=0.24 Score=28.01 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=14.7
Q ss_pred CEEEEECCCCCHHHHHHHHHH
Q ss_conf 669995889883589999999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARML 65 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~ 65 (685)
.++++++|||||+| .+.+++
T Consensus 2 ~iillGpPGsGKgT-~a~~l~ 21 (225)
T PTZ00088 2 KIVLFGAPGVGKGT-FAEILS 21 (225)
T ss_pred EEEEECCCCCCHHH-HHHHHH
T ss_conf 79998999998799-999999
No 318
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.64 E-value=0.45 Score=26.12 Aligned_cols=68 Identities=12% Similarity=0.248 Sum_probs=32.6
Q ss_pred HHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHH----CCCCCHHHHHH
Q ss_conf 42057664067876126751467875202444343201012222102355674488731553100----00000013666
Q gi|254780952|r 291 FQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSE----LSTIIQEIINI 366 (685)
Q Consensus 291 f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~E----a~~Ia~~I~~l 366 (685)
..+.+|+++.+.|-.-=| +.++.|.-.. - .+.|..-.|+...++ |+.+.++.+.+
T Consensus 193 I~~N~Pe~~liVLLIDER-PEEVTdm~r~-------------------v-~~eV~aStfD~~~~~H~~vae~~lerAkRl 251 (416)
T PRK09376 193 ITTNHPEVHLIVLLIDER-PEEVTDMQRS-------------------V-KGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred HHHCCCCEEEEEEEECCC-CHHHHHHHHH-------------------C-CEEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 985699719999990489-3477787750-------------------4-618999779998789999999999999999
Q ss_pred HHHCCCCCHHHHEECC
Q ss_conf 5311365303111010
Q gi|254780952|r 367 QNTGMSLNNIAILVRT 382 (685)
Q Consensus 367 ~~~g~~~~diAVL~Rt 382 (685)
.+.| .|+.||.=+
T Consensus 252 vE~G---~DVvillDS 264 (416)
T PRK09376 252 VEHG---KDVVILLDS 264 (416)
T ss_pred HHCC---CCEEEEECC
T ss_conf 8769---978999731
No 319
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=89.61 E-value=1.5 Score=22.59 Aligned_cols=56 Identities=9% Similarity=0.186 Sum_probs=37.9
Q ss_pred CCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 74488731553100000000136665311365303111010014788998752023320320
Q gi|254780952|r 342 AKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVI 403 (685)
Q Consensus 342 ~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~ 403 (685)
+.+.+....+ +.+.+..+|+.....|. .+-|.+=|.+.+..+.++|.+.||.++..
T Consensus 421 P~ievRp~~~---QvdDL~~EI~~r~~~~e---RvLVTtLTKkmAEdLT~Yl~e~gikv~Yl 476 (663)
T COG0556 421 PEIEVRPTKG---QVDDLLSEIRKRVAKNE---RVLVTTLTKKMAEDLTEYLKELGIKVRYL 476 (663)
T ss_pred CCEEEECCCC---CHHHHHHHHHHHHHCCC---EEEEEEEHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8526514877---47899999999996497---29998436888999999998669647864
No 320
>pfam04665 Pox_A32 Poxvirus A32 protein. The A32 protein is thought to be involved in viral DNA packaging.
Probab=89.60 E-value=0.45 Score=26.13 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=25.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 669995889883589999999999808999788676211
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
.+.++||-|||||+-|..-...|+. ..+.|..+|-
T Consensus 15 rmaivGgSGSGKT~yLlsLf~tlv~----kykhIfLfTp 49 (241)
T pfam04665 15 RMAIVGGSGSGKTTYLLSLLRTLVR----KFKHIFLFTP 49 (241)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH----HHEEEEEECC
T ss_conf 5999815887566999999999977----4158999624
No 321
>PRK06893 DNA replication initiation factor; Validated
Probab=89.53 E-value=0.8 Score=24.40 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCCCCCCHHHHHHCCCHHHHHHHHCCCCCCEE-EEECCCCCHHHHHHHHH
Q ss_conf 13683215888762998899998538989669-99588988358999999
Q gi|254780952|r 16 GDFVPSCVPNYLKGLNAQQTHAVTIPDDTPLL-ILAGAGTGKTTVLIARM 64 (685)
Q Consensus 16 ~~~~~~~~~~~l~~Ln~~Q~~av~~~~~~~~l-V~AgaGsGKT~~L~~ri 64 (685)
++|++..-...+..|- +... ...++.+ +-+++|||||+.|-.-.
T Consensus 16 dnF~~~~n~~~~~~l~----~~~~-~~~~~~l~i~G~~gsGKTHLLqa~~ 60 (229)
T PRK06893 16 DNFYSDNNLLLLDSLR----KNFI-DLKQPFFYIWGGKSSGKSHLLKAVS 60 (229)
T ss_pred HCCCCCCHHHHHHHHH----HHCC-CCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 3154687499999999----7550-2469879998999998899999999
No 322
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=89.46 E-value=0.44 Score=26.19 Aligned_cols=45 Identities=29% Similarity=0.465 Sum_probs=29.7
Q ss_pred HHHHHH-----CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEE
Q ss_conf 999985-----389896699958898835899999999998089997886762
Q gi|254780952|r 34 QTHAVT-----IPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAM 81 (685)
Q Consensus 34 Q~~av~-----~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~i 81 (685)
|.+||. +..-.|+++++.|||||+ -|+.-.+.||... .++.|++.
T Consensus 36 Qe~Av~~i~~Aa~qrrhvlliG~PGtGKS-mlakam~elLpk~--~ledilv~ 85 (637)
T PRK13765 36 QEHAVEVIKKAAKQRRHVMLIGSPGTGKS-MLAKAMAELLPKE--ELQDILVY 85 (637)
T ss_pred HHHHHHHHHHHHHHHCCEEEECCCCCCHH-HHHHHHHHHCCCC--CCCCEEEE
T ss_conf 19999999999984373898689998799-9999999757988--65627996
No 323
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=89.46 E-value=0.17 Score=29.09 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=23.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHH
Q ss_conf 6999588988358999999999980899978867621147999999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNR 94 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~R 94 (685)
+.|++||||||=|- .++++.+-+ ||--.|.+|-.+
T Consensus 2 ~FvLGGPGSGKGTQ----Ca~Iv~~f~----------~~HLSAGDLLR~ 36 (189)
T TIGR01359 2 VFVLGGPGSGKGTQ----CAKIVENFG----------YVHLSAGDLLRA 36 (189)
T ss_pred EEEECCCCCCHHHH----HHHHHHHCC----------CEEECHHHHHHH
T ss_conf 77636989875678----999998539----------468807478899
No 324
>PRK03839 putative kinase; Provisional
Probab=89.43 E-value=0.3 Score=27.33 Aligned_cols=14 Identities=43% Similarity=0.679 Sum_probs=11.5
Q ss_pred EEEEECCCCCHHHH
Q ss_conf 69995889883589
Q gi|254780952|r 46 LLILAGAGTGKTTV 59 (685)
Q Consensus 46 ~lV~AgaGsGKT~~ 59 (685)
++|++-||||||++
T Consensus 3 I~ITGTPGtGKTTv 16 (180)
T PRK03839 3 IAITGTPGVGKTTI 16 (180)
T ss_pred EEEECCCCCCHHHH
T ss_conf 99978999998999
No 325
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB; InterPro: IPR013363 Proteins in this entry are the DotB component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This family is most closely related to the TraJ proteins of plasmid transfer (IPR013364 from INTERPRO), rather than to proteins of other type IV secretion systems..
Probab=89.34 E-value=0.86 Score=24.20 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=14.3
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCC
Q ss_conf 878775111126788759999530688631133
Q gi|254780952|r 250 LLLRLLCQKEDSKQGARICCVGDENQCIYEWRG 282 (685)
Q Consensus 250 ~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRG 282 (685)
+|+..+.++.. ... .+-|.+-..=|.||-
T Consensus 52 dl~n~iyGPn~---ttq-~~~G~didthye~rP 80 (358)
T TIGR02524 52 DLLNAIYGPNA---TTQ-LLRGKDIDTHYEIRP 80 (358)
T ss_pred HHHHHHCCCCC---CEE-EEECCCCCCCCCCCC
T ss_conf 78875218752---112-320452221000046
No 326
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=89.32 E-value=0.64 Score=25.09 Aligned_cols=45 Identities=33% Similarity=0.392 Sum_probs=22.0
Q ss_pred CCCEEEE-EC-CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE--CHHHHH
Q ss_conf 8966999-58-89883589999999999808999788676211--479999
Q gi|254780952|r 43 DTPLLIL-AG-AGTGKTTVLIARMLHLICHKEIPPSKILAMTF--TNQAIQ 89 (685)
Q Consensus 43 ~~~~lV~-Ag-aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF--T~~AA~ 89 (685)
..|..|. +| =|||||||-..-..||+... ..+++|++.= -|-||.
T Consensus 100 ~~P~vilmvGLQGsGKTTt~gKLA~~ll~kk--~~~kvLLva~D~yRPAA~ 148 (439)
T TIGR00959 100 KRPTVILMVGLQGSGKTTTAGKLALYLLKKK--EGKKVLLVACDLYRPAAI 148 (439)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHH--CCCCEEEEEHHCCCHHHH
T ss_conf 8683899731378857889999999999986--389703403210347899
No 327
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=89.26 E-value=0.1 Score=30.47 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=12.2
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 69995889883589999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARML 65 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~ 65 (685)
.+|++| |||==.+. +|.+
T Consensus 5 ylvIGG-GSGGiAsa-~RAa 22 (475)
T TIGR01421 5 YLVIGG-GSGGIASA-RRAA 22 (475)
T ss_pred EEEECC-CCHHHHHH-HHHH
T ss_conf 699836-86157888-9888
No 328
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=89.24 E-value=0.35 Score=26.87 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=16.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6999588988358999999999980899
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
+-|++|+|||||+++ ..+...|+
T Consensus 2 igiTG~igSGKStv~-----~~l~~~g~ 24 (179)
T cd02022 2 IGLTGGIGSGKSTVA-----KLLKELGI 24 (179)
T ss_pred EEEECCCCCCHHHHH-----HHHHHCCC
T ss_conf 886378757899999-----99998799
No 329
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=89.07 E-value=0.94 Score=23.92 Aligned_cols=10 Identities=60% Similarity=0.800 Sum_probs=3.7
Q ss_pred HCCCCCHHHH
Q ss_conf 0000000136
Q gi|254780952|r 355 ELSTIIQEII 364 (685)
Q Consensus 355 Ea~~Ia~~I~ 364 (685)
|.+.||++|.
T Consensus 185 ele~ia~eIi 194 (604)
T COG1855 185 ELEEIAREII 194 (604)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 330
>KOG1802 consensus
Probab=89.05 E-value=0.36 Score=26.80 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=38.6
Q ss_pred CCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEE
Q ss_conf 93699961134556698369846857668422129967878999999999858641169983
Q gi|254780952|r 569 NCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLFY 630 (685)
Q Consensus 569 d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~~ 630 (685)
..|.|.|+.+=-|.|=|..|+.-+-.... ..=+-+..+|| +-||+||||..|+|.-
T Consensus 758 ~~veVasVDaFQGrEKdfIIlSCVRsn~~-----qgIGFl~d~RR-lNVaLTRaK~glvivG 813 (935)
T KOG1802 758 KEVEVASVDAFQGREKDFIILSCVRSNEH-----QGIGFLNDPRR-LNVALTRAKYGLVIVG 813 (935)
T ss_pred HEEEEEEECCCCCCCCCEEEEEEEECCCC-----CCCCCCCCCHH-HHHHHHHCCCCEEEEC
T ss_conf 23688752022676454599998613654-----44321168014-3322202143169966
No 331
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=88.97 E-value=0.38 Score=26.63 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=34.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEHH
Q ss_conf 69995889883589999999999808999788676211479999999999985164587896178
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQTFH 110 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~T~H 110 (685)
.+|++|+.|||+.- +++. ....+ ...+.+-| ...-=.||++||..+-........|+-
T Consensus 2 iLVtGG~rSGKS~~-AE~l---a~~~~--~~~~YiAT-~~~~D~Em~~RI~~Hr~~R~~~w~TiE 59 (169)
T cd00544 2 ILVTGGARSGKSRF-AERL---AAELG--GPVTYIAT-AEAFDDEMAERIARHRKRRPAHWRTIE 59 (169)
T ss_pred EEEECCCCCCHHHH-HHHH---HHHCC--CCCEEEEC-CCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 89977866368999-9999---98459--98199978-898898999999999966899966996
No 332
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=88.85 E-value=0.55 Score=25.51 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=15.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 69995889883589999999999808
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHK 71 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~ 71 (685)
+++.+-||||||+. +..++..+.+.
T Consensus 2 ivl~GlP~SGKSt~-a~~L~~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTF-SKELSKKLSEK 26 (249)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHHHH
T ss_conf 78967899989999-99999999982
No 333
>KOG2028 consensus
Probab=88.82 E-value=1.1 Score=23.33 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 22102532107751134688787751111267887599995
Q gi|254780952|r 231 EKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVG 271 (685)
Q Consensus 231 ~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVG 271 (685)
.|=..+|+||..-.|..|.+++--..+ .+.|+.+|
T Consensus 221 krkTilFiDEiHRFNksQQD~fLP~VE------~G~I~lIG 255 (554)
T KOG2028 221 KRKTILFIDEIHRFNKSQQDTFLPHVE------NGDITLIG 255 (554)
T ss_pred CCEEEEEEHHHHHHHHHHHHCCCCEEC------CCCEEEEE
T ss_conf 440698737765532321100342130------67069985
No 334
>KOG1514 consensus
Probab=88.79 E-value=0.55 Score=25.52 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=6.5
Q ss_pred HEEEEEECHHH
Q ss_conf 86762114799
Q gi|254780952|r 77 KILAMTFTNQA 87 (685)
Q Consensus 77 ~Il~iTFT~~A 87 (685)
...+|-|.+++
T Consensus 49 ~~~~i~~~~~~ 59 (767)
T KOG1514 49 GESVINFIEVT 59 (767)
T ss_pred CCEEEECCCCC
T ss_conf 61112224344
No 335
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=88.77 E-value=0.75 Score=24.61 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 2998899998538989669-99588988358999999999980899
Q gi|254780952|r 29 GLNAQQTHAVTIPDDTPLL-ILAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~~~~l-V~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
.++-+||++-.-| .|-++ +++--|||||| |++-+...|.+.|+
T Consensus 5 ~~t~~~r~~~~~h-~g~vlWlTGLSGsGKsT-iA~Al~~~L~~~G~ 48 (187)
T TIGR00455 5 AITKDERQALNKH-RGVVLWLTGLSGSGKST-IANALEKKLEKKGY 48 (187)
T ss_pred CCCHHHHHHHCCC-CEEEEEEECCCCCHHHH-HHHHHHHHHHHCCC
T ss_conf 7787899986279-73898511688563579-99999999996697
No 336
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=88.74 E-value=0.36 Score=26.76 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=13.7
Q ss_pred EEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9995889883589999999999
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
+|.+.||||||++- ..++..+
T Consensus 2 VlmGvaG~GKs~~a-~~l~~~l 22 (175)
T TIGR01313 2 VLMGVAGSGKSTIA-SALAHRL 22 (175)
T ss_pred EEECCCCCCHHHHH-HHHHHHH
T ss_conf 67602786288999-9999985
No 337
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=88.71 E-value=0.37 Score=26.71 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=33.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEHH
Q ss_conf 69995889883589999999999808999788676211479999999999985164587896178
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQTFH 110 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~T~H 110 (685)
++|++|++|||+.--. + |....+ +..+.+-| ...-=.||++||..+-........|+-
T Consensus 1 iLVtGG~rSGKS~~AE-~---la~~~~--~~~~YiAT-~~~~D~Em~~RI~~Hr~~R~~~w~tiE 58 (166)
T pfam02283 1 ILVTGGARSGKSRFAE-R---LALASG--GPVVYIAT-AQAFDDEMAERIARHRARRPAGWTTIE 58 (166)
T ss_pred CEEECCCCCCHHHHHH-H---HHHHCC--CCEEEEEC-CCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9886887733899999-9---998559--98199976-988888999999999971899967997
No 338
>PRK08233 hypothetical protein; Provisional
Probab=88.68 E-value=0.39 Score=26.54 Aligned_cols=19 Identities=53% Similarity=0.660 Sum_probs=12.8
Q ss_pred EEEECCCCCHHHHHHHHHHH
Q ss_conf 99958898835899999999
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~ 66 (685)
-|.+|.|||||+ |++++..
T Consensus 7 gIaGgSgSGKTt-la~~l~~ 25 (182)
T PRK08233 7 TIAAVSGGGKTT-LTERLTH 25 (182)
T ss_pred EEECCCCCCHHH-HHHHHHH
T ss_conf 996888678999-9999999
No 339
>KOG0734 consensus
Probab=88.67 E-value=0.49 Score=25.85 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=12.9
Q ss_pred HHHH-HHHHHHHHHHHHHEE
Q ss_conf 7899-999999985864116
Q gi|254780952|r 608 VEGE-RRLAYVGITRAKKKC 626 (685)
Q Consensus 608 ~eEE-rRL~YVA~TRAk~~L 626 (685)
+|.| +||+--+--|||.-|
T Consensus 684 idaEi~~lL~~sYeRak~iL 703 (752)
T KOG0734 684 IDAEIKRLLRDSYERAKSIL 703 (752)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999
No 340
>KOG0989 consensus
Probab=88.44 E-value=0.52 Score=25.71 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=14.8
Q ss_pred CCCCEEE-EECCCCCHHHHHHH
Q ss_conf 9896699-95889883589999
Q gi|254780952|r 42 DDTPLLI-LAGAGTGKTTVLIA 62 (685)
Q Consensus 42 ~~~~~lV-~AgaGsGKT~~L~~ 62 (685)
..+|.++ -++||||||.|...
T Consensus 55 ~~lp~~LFyGPpGTGKTStala 76 (346)
T KOG0989 55 RILPHYLFYGPPGTGKTSTALA 76 (346)
T ss_pred CCCCEEEEECCCCCCHHHHHHH
T ss_conf 6886078668999867689999
No 341
>pfam12340 DUF3638 Protein of unknown function (DUF3638). This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=88.39 E-value=0.6 Score=25.28 Aligned_cols=78 Identities=17% Similarity=0.350 Sum_probs=48.2
Q ss_pred CCCCCHHHHH-----HC--CCHHHHHHHHC----CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHH
Q ss_conf 6832158887-----62--99889999853----8989669995889883589999999999808999788676211479
Q gi|254780952|r 18 FVPSCVPNYL-----KG--LNAQQTHAVTI----PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQ 86 (685)
Q Consensus 18 ~~~~~~~~~l-----~~--Ln~~Q~~av~~----~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~ 86 (685)
.-|.+-|+|| ++ +.+.|.+.+.. ..+.+.+...-=|.|||++++--++-.+.+ .+++..+++-+.
T Consensus 5 W~p~~~P~~Ll~E~e~~iliR~~Q~~va~~~i~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAd----g~~Lvr~vvp~~ 80 (229)
T pfam12340 5 WDPLDYPDWLLLEIESNILIRPVQVDVARAMISPSSGSNSVLQLNMGEGKTSVIVPMVAAVLAD----GSRLVRVIVPKP 80 (229)
T ss_pred CCCHHCHHHHHHHHHCCCEECHHHHHHHHHHHCCCCCCCEEEHHHCCCCCCEEEHHHHHHHHCC----CCCEEEEECCHH
T ss_conf 8811163898999984965428999999998575578872201120699622437889999748----884589982688
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999999851
Q gi|254780952|r 87 AIQEMKNRLACYL 99 (685)
Q Consensus 87 AA~el~~Ri~~~l 99 (685)
-...+.+=+...+
T Consensus 81 Ll~q~~~~L~~~l 93 (229)
T pfam12340 81 LLRQMAQMLQSRL 93 (229)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999986
No 342
>KOG1970 consensus
Probab=88.34 E-value=0.57 Score=25.40 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=13.8
Q ss_pred CEEEEECCCCCHHHHHH
Q ss_conf 66999588988358999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLI 61 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~ 61 (685)
-+|+.+.+|+|||+|+-
T Consensus 112 iLLltGPsGcGKSTtvk 128 (634)
T KOG1970 112 ILLLTGPSGCGKSTTVK 128 (634)
T ss_pred EEEEECCCCCCCHHHHH
T ss_conf 79985798887131999
No 343
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=88.13 E-value=0.55 Score=25.53 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=7.6
Q ss_pred HHHHHHHHEEEEEEC
Q ss_conf 998586411699831
Q gi|254780952|r 617 VGITRAKKKCHLFYT 631 (685)
Q Consensus 617 VA~TRAk~~L~l~~~ 631 (685)
|+..-.|+.-++.-+
T Consensus 744 I~~~~pkR~y~~~~~ 758 (818)
T PRK13830 744 VATAIPKREYYVASP 758 (818)
T ss_pred HHCCCCCCEEEEECC
T ss_conf 962586651899838
No 344
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.02 E-value=1.4 Score=22.75 Aligned_cols=38 Identities=13% Similarity=0.286 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 2899999999999997399854789899999986675415
Q gi|254780952|r 133 LDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRG 172 (685)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~ 172 (685)
+++.+-...++++...+- +.+....-+..+++..+++.
T Consensus 22 i~E~~i~e~~reir~ALL--eADVnl~vVk~fi~~ikera 59 (451)
T COG0541 22 ITEKDVKEALREIRRALL--EADVNLKVVKDFIKRIKERA 59 (451)
T ss_pred CCHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHH
T ss_conf 779999999999999999--64446899999999999986
No 345
>KOG0335 consensus
Probab=87.92 E-value=1.6 Score=22.27 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=52.9
Q ss_pred CCHHHHHHHHCCCCCC-EEEEECCCCCHHHHHH-HHHHHHHHCCCCC--------HHHEEEEEECHHHHHHHHHHHHHHC
Q ss_conf 9988999985389896-6999588988358999-9999999808999--------7886762114799999999999851
Q gi|254780952|r 30 LNAQQTHAVTIPDDTP-LLILAGAGTGKTTVLI-ARMLHLICHKEIP--------PSKILAMTFTNQAIQEMKNRLACYL 99 (685)
Q Consensus 30 Ln~~Q~~av~~~~~~~-~lV~AgaGsGKT~~L~-~ri~~Ll~~~~~~--------p~~Il~iTFT~~AA~el~~Ri~~~l 99 (685)
.|+=|+-++..-.+|. +++-|--|||||..-. --+.+++.++..+ .-++++++-||.-|..+.+|.++..
T Consensus 97 ptpvQk~sip~i~~GrdlmacAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~ 176 (482)
T KOG0335 97 PTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFS 176 (482)
T ss_pred CCCCEECCCCEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 98615604224425884278825788513788888999998648656665677889725998173787667888887640
Q ss_pred CCCCCEE
Q ss_conf 6458789
Q gi|254780952|r 100 GEKIPRI 106 (685)
Q Consensus 100 ~~~~~~i 106 (685)
+...+++
T Consensus 177 ~~s~~~~ 183 (482)
T KOG0335 177 YLSGMKS 183 (482)
T ss_pred CCCCCEE
T ss_conf 2212203
No 346
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=87.84 E-value=0.86 Score=24.17 Aligned_cols=37 Identities=32% Similarity=0.572 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 966999588988358999999999980899978867621
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
.|+.|-+.+|||||+.|-. +++-+.. ..+-.+|..+|
T Consensus 35 npl~i~G~~G~GKTHLLqA-~~~~~~~-~~~~~~v~yl~ 71 (219)
T pfam00308 35 NPLFIYGGVGLGKTHLLHA-IGNYALR-NFPNLRVVYLT 71 (219)
T ss_pred CCEEEECCCCCCHHHHHHH-HHHHHHH-HCCCCEEEEEE
T ss_conf 8269988999988899999-9999998-49998288843
No 347
>KOG0741 consensus
Probab=87.84 E-value=0.8 Score=24.42 Aligned_cols=55 Identities=13% Similarity=0.245 Sum_probs=22.3
Q ss_pred HHHCCHHHHHHCCCCCCCCEEEEECCCCCH-HCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHH
Q ss_conf 320101222210235567448873155310-00000001366653113653031110100147889
Q gi|254780952|r 325 KQRFDKKLFTQRDCHDDAKVSIHVSQSDNS-ELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKF 389 (685)
Q Consensus 325 ~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~-Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l 389 (685)
++|++..+.-.-+ .+.+++++....+... |. ..++..++..++|.|.. |....+|
T Consensus 389 PGRlEVqmEIsLP-DE~gRlQIl~IHT~rMre~--------~~l~~dVdl~elA~lTK-NfSGAEl 444 (744)
T KOG0741 389 PGRLEVQMEISLP-DEKGRLQILKIHTKRMREN--------NKLSADVDLKELAALTK-NFSGAEL 444 (744)
T ss_pred CCCEEEEEEEECC-CCCCCEEEEEHHHHHHHHC--------CCCCCCCCHHHHHHHHC-CCCHHHH
T ss_conf 8716999998468-8767278887144556651--------78777769899999855-7862678
No 348
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=87.81 E-value=0.76 Score=24.54 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=22.3
Q ss_pred CC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 96-69995889883589999999999808999788676211
Q gi|254780952|r 44 TP-LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 44 ~~-~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
|. ++|.+.||||||+.+.+-.+..... + ++++.++.
T Consensus 23 G~itei~G~pG~GKTtl~lq~a~~~~~~-g---~~vlYidt 59 (224)
T PRK09361 23 GTITQIYGPPGSGKTNICIQLAVEAARQ-G---KKVIYIDT 59 (224)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-C---CCEEEECC
T ss_conf 8799998999985999999999999974-9---90999678
No 349
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=87.79 E-value=0.6 Score=25.24 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=20.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9896699958898835899999999
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~ 66 (685)
.++.++|.|+||+|||+.+..-+.+
T Consensus 14 ~GQr~~I~g~~g~GKt~l~~~i~~~ 38 (213)
T pfam00006 14 KGQRIGIFGGSGTGKTVLLGMIARN 38 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7888778789999889999999985
No 350
>PRK08903 hypothetical protein; Validated
Probab=87.79 E-value=1.9 Score=21.78 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=14.0
Q ss_pred CEEEEECCCCCHHHHHHH
Q ss_conf 669995889883589999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIA 62 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ 62 (685)
.+.|-+++|||||+.|-.
T Consensus 44 ~l~i~G~~G~GKTHLl~a 61 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 699989999988899999
No 351
>PRK06217 hypothetical protein; Validated
Probab=87.78 E-value=0.54 Score=25.57 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=34.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEE----EEECHHHHHHHHHHHH-HHCCCCCCEE--EEHHHHH
Q ss_conf 669995889883589999999999808999788676----2114799999999999-8516458789--6178999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILA----MTFTNQAIQEMKNRLA-CYLGEKIPRI--QTFHSFC 113 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~----iTFT~~AA~el~~Ri~-~~l~~~~~~i--~T~Hsf~ 113 (685)
.++|+++.|||||| |..+++..+.-..++-++..- ..||.+=..+-+.++. +.+.....+| |++-+++
T Consensus 3 rI~i~G~sGsGkST-la~~La~~l~~~~~~lD~~~W~p~~~pf~~kR~~~eR~~ll~~~~~~~~~WV~sGs~~~wg 77 (185)
T PRK06217 3 RIHITGASGSGTTT-LGAALAEALDLPHLDTDDFFWLPTDPPFTTKREPEERLRLLLEDLRDSEGWILSGSLLGWG 77 (185)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHHCCCEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 79997899887899-9999999759896864555356899975643799999999999863799989957752323
No 352
>PRK09165 replicative DNA helicase; Provisional
Probab=87.75 E-value=1.3 Score=22.86 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=12.8
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 169983132112576543335556888723
Q gi|254780952|r 625 KCHLFYTINRRTHDFTRVERYQPSQVSQFL 654 (685)
Q Consensus 625 ~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl 654 (685)
..-|..+++|++.-..-...+.+ .-+||.
T Consensus 445 ~~elivaKnRnG~~G~v~l~f~~-~~~rF~ 473 (484)
T PRK09165 445 KAEVIIAKQRHGPTGTVKLHFES-EFTRFG 473 (484)
T ss_pred CEEEEEECCCCCCCEEEEEEEEC-CCCCCC
T ss_conf 07999963788986069999877-877622
No 353
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=87.61 E-value=0.45 Score=26.09 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=18.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 999588988358999999999980899978867621
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
.|.+|.|||||+ ++.++...+. .+++.+|+
T Consensus 12 gIaG~SgSGKTT-v~~~l~~~~~-----~~~~~~I~ 41 (218)
T COG0572 12 GIAGGSGSGKTT-VAKELSEQLG-----VEKVVVIS 41 (218)
T ss_pred EEECCCCCCHHH-HHHHHHHHHC-----CCCCEEEE
T ss_conf 986798778899-9999999828-----67524765
No 354
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=87.48 E-value=0.77 Score=24.50 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=13.6
Q ss_pred CCCCCEEEE-ECCCCCHHHH
Q ss_conf 898966999-5889883589
Q gi|254780952|r 41 PDDTPLLIL-AGAGTGKTTV 59 (685)
Q Consensus 41 ~~~~~~lV~-AgaGsGKT~~ 59 (685)
..+.|++|+ +.+|||||++
T Consensus 5 ~~~~~iiVVMGVsGsGKSTi 24 (177)
T PRK11545 5 NHDHHIYVLMGVSGSGKSAV 24 (177)
T ss_pred CCCCEEEEEECCCCCCHHHH
T ss_conf 78875999984798999999
No 355
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=87.46 E-value=0.62 Score=25.18 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=18.0
Q ss_pred EEEEECCCCCHHHHHHHH-HHHHHHC
Q ss_conf 699958898835899999-9999980
Q gi|254780952|r 46 LLILAGAGTGKTTVLIAR-MLHLICH 70 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~r-i~~Ll~~ 70 (685)
-++.+.||||||.-.+.. +...+..
T Consensus 3 ~litG~pGsGKS~~aV~~~i~~al~~ 28 (183)
T pfam05707 3 YLITGKPGSGKTLEAVSYHILPALKK 28 (183)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99935999962299999999999878
No 356
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=87.46 E-value=1.8 Score=21.92 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=15.2
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99958898835899999999998089
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICHKE 72 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~~~ 72 (685)
-+++=||||||+ |+..+..-|...+
T Consensus 3 W~tGLsgsGKTT-lA~~l~~~L~~~~ 27 (149)
T cd02027 3 WLTGLSGSGKST-IARALEEKLFQRG 27 (149)
T ss_pred EEECCCCCCHHH-HHHHHHHHHHHCC
T ss_conf 987999999999-9999999999869
No 357
>COG4889 Predicted helicase [General function prediction only]
Probab=87.44 E-value=1.2 Score=23.32 Aligned_cols=42 Identities=33% Similarity=0.427 Sum_probs=28.2
Q ss_pred CCCCCHHHHH-----HCCCHHHHHHHHCCC-------CCCEEEEECCCCCHHHHHH
Q ss_conf 6832158887-----629988999985389-------8966999588988358999
Q gi|254780952|r 18 FVPSCVPNYL-----KGLNAQQTHAVTIPD-------DTPLLILAGAGTGKTTVLI 61 (685)
Q Consensus 18 ~~~~~~~~~l-----~~Ln~~Q~~av~~~~-------~~~~lV~AgaGsGKT~~L~ 61 (685)
++|.+.++=+ ..+.+-|++|+.+.. -| -||-|| |||||+|-.
T Consensus 145 f~p~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RG-kLIMAc-GTGKTfTsL 198 (1518)
T COG4889 145 FDPTELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRG-KLIMAC-GTGKTFTSL 198 (1518)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-CEEEEC-CCCCCCHHH
T ss_conf 495326656564787899836789999998625516677-589833-788621378
No 358
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=87.40 E-value=0.54 Score=25.56 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=27.2
Q ss_pred CCHHCCCCCHHHHHHH-HHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 3100000000136665-311365303111010014788998752023320320
Q gi|254780952|r 352 DNSELSTIIQEIINIQ-NTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVI 403 (685)
Q Consensus 352 ~~~Ea~~Ia~~I~~l~-~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~ 403 (685)
.+++++.|++-+++++ .+| .......=.|+ +-.+++.+...+||+...
T Consensus 201 ~~~~a~~IV~lv~~~R~a~g-~e~~~Gl~~RA---~lMiA~~at~~dipv~~d 249 (265)
T TIGR02640 201 AEESAATIVRLVRELRLASG-DEKTSGLSLRA---SLMIAEVATQEDIPVDVD 249 (265)
T ss_pred CHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHH---HHHHHHHHHHCCCCCCCC
T ss_conf 24678999999999842125-53337436899---999998754437986776
No 359
>PRK08939 primosomal protein DnaI; Reviewed
Probab=87.36 E-value=1.9 Score=21.85 Aligned_cols=19 Identities=0% Similarity=0.200 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHCCCCCEEE
Q ss_conf 1478899875202332032
Q gi|254780952|r 384 WQTRKFEDAFLEQEIPHKV 402 (685)
Q Consensus 384 ~~~~~l~~~L~~~gIP~~~ 402 (685)
..+..|+.+|.+.|+++..
T Consensus 172 yL~~aian~La~~g~~v~~ 190 (306)
T PRK08939 172 YLLAAIANELAKKGVSSTL 190 (306)
T ss_pred HHHHHHHHHHHHCCCEEEE
T ss_conf 9999999999986992999
No 360
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.33 E-value=2 Score=21.60 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHC
Q ss_conf 299889999853-89896699958898835899999999998089997886762114799999999999851
Q gi|254780952|r 29 GLNAQQTHAVTI-PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYL 99 (685)
Q Consensus 29 ~Ln~~Q~~av~~-~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l 99 (685)
.+--.||-++.- -.+...-++|+.|.|||+...---+|+-.. | ++.+.|--|..-+...-+||.++.
T Consensus 82 ~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k-g---kr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 82 RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK-G---KRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC-C---CEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 8607889999998737844898278876547999999998755-8---749999667899999999999988
No 361
>PRK06851 hypothetical protein; Provisional
Probab=87.32 E-value=0.59 Score=25.30 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 69995889883589999999999808999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIP 74 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~ 74 (685)
..+-+|||+||++.| .+|+.-..+.|.+
T Consensus 34 ~ilKGGpGtGKStlm-K~ig~~~~~~Gyd 61 (368)
T PRK06851 34 FILKGGPGTGKSTLM-KKIGEEFLEKGYD 61 (368)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHHCCCC
T ss_conf 999689997789999-9999999968983
No 362
>KOG1532 consensus
Probab=87.31 E-value=0.74 Score=24.64 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=37.9
Q ss_pred HHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 74012210253210775113468878775111126788759999530688631133220134554205766406787612
Q gi|254780952|r 227 KKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQN 306 (685)
Q Consensus 227 ~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~N 306 (685)
++...+++|++|| | |-|.+++..=+. |. | ....|..-||-.-+ ..-..
T Consensus 110 ek~~~~~~~~liD----T-PGQIE~FtWSAs------Gs-I-------------------Ite~lass~ptvv~-YvvDt 157 (366)
T KOG1532 110 EKRAEEFDYVLID----T-PGQIEAFTWSAS------GS-I-------------------ITETLASSFPTVVV-YVVDT 157 (366)
T ss_pred HHHHCCCCEEEEC----C-CCCEEEEEECCC------CC-C-------------------HHHHHHHCCCEEEE-EEECC
T ss_conf 9742204779974----8-880689984278------50-1-------------------58667613985999-99447
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 67514678752024443
Q gi|254780952|r 307 YRSTTHILNTANKLISH 323 (685)
Q Consensus 307 yRS~~~Ii~~an~li~~ 323 (685)
-||+.++.=.+|-+.++
T Consensus 158 ~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532 158 PRSTSPTTFMSNMLYAC 174 (366)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 76788416998899999
No 363
>KOG0328 consensus
Probab=87.31 E-value=0.24 Score=27.96 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=41.5
Q ss_pred HHHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHH
Q ss_conf 89999853-8989669995889883589999999999808999788676211479999999999985
Q gi|254780952|r 33 QQTHAVTI-PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACY 98 (685)
Q Consensus 33 ~Q~~av~~-~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~ 98 (685)
-|+.||.. ..+..+.+.|-.|||||.+.+--+..-+.- +..--+.|++|-||.-|..+.+-+..+
T Consensus 53 IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~-~~r~tQ~lilsPTRELa~Qi~~vi~al 118 (400)
T KOG0328 53 IQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI-SVRETQALILSPTRELAVQIQKVILAL 118 (400)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEEECCC-CCCEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 776102456336614787047888447898663140343-420035789547089999999999983
No 364
>KOG0327 consensus
Probab=87.22 E-value=0.96 Score=23.86 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=39.6
Q ss_pred CHHHHHHHHCCCCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHH
Q ss_conf 98899998538989-66999588988358999999999980899978867621147999999999998
Q gi|254780952|r 31 NAQQTHAVTIPDDT-PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLAC 97 (685)
Q Consensus 31 n~~Q~~av~~~~~~-~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~ 97 (685)
..=|+.||.-...| ++.+.|-+|||||.+-.--+...+.. ...-.+++.+..|+--|....++...
T Consensus 50 SaIQqrAI~p~i~G~dv~~qaqsgTgKt~af~i~ilq~iD~-~~ke~qalilaPtreLa~q~~~v~~~ 116 (397)
T KOG0327 50 SAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-SVKETQALILAPTRELAQQIQKVVRA 116 (397)
T ss_pred HHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC-CHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 27776343553468744676302544114667888751374-16777798861327888989999886
No 365
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.21 E-value=0.88 Score=24.13 Aligned_cols=10 Identities=40% Similarity=0.750 Sum_probs=4.2
Q ss_pred HHHHHHCCCC
Q ss_conf 2457530468
Q gi|254780952|r 429 DEDFKRIINC 438 (685)
Q Consensus 429 ~~a~~~il~~ 438 (685)
..++.|++++
T Consensus 238 nQaleRIinf 247 (375)
T COG5008 238 NQALERIINF 247 (375)
T ss_pred HHHHHHHHHH
T ss_conf 5789999863
No 366
>KOG1533 consensus
Probab=87.20 E-value=0.25 Score=27.87 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=12.6
Q ss_pred EEEEECCCCCHHHHH
Q ss_conf 699958898835899
Q gi|254780952|r 46 LLILAGAGTGKTTVL 60 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L 60 (685)
.+|+++|||||||--
T Consensus 5 qvVIGPPgSGKsTYc 19 (290)
T KOG1533 5 QVVIGPPGSGKSTYC 19 (290)
T ss_pred EEEECCCCCCCCCHH
T ss_conf 688769999853113
No 367
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=87.18 E-value=0.69 Score=24.83 Aligned_cols=32 Identities=34% Similarity=0.689 Sum_probs=20.9
Q ss_pred CEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 6699958-8988358999999999980899978867621
Q gi|254780952|r 45 PLLILAG-AGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 45 ~~lV~Ag-aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
|+-|+.| =||||||.|-+ |+.+.. -++|.+|-
T Consensus 2 pVtvitGFLGsGKTTlL~~----lL~~~~--g~kiAVIV 34 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNH----LLANRD--GKKIAVIV 34 (323)
T ss_pred CEEEEEECCCCCHHHHHHH----HHHCCC--CCEEEEEE
T ss_conf 7799811677998999999----985458--98079998
No 368
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.08 E-value=0.57 Score=25.41 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=17.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9669995889883589999999999
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
.|+|..+.||.|||+ |++-||+-+
T Consensus 53 DHvLl~GPPGlGKTT-LA~IIA~Em 76 (332)
T COG2255 53 DHVLLFGPPGLGKTT-LAHIIANEL 76 (332)
T ss_pred CEEEEECCCCCCHHH-HHHHHHHHH
T ss_conf 747864799876888-999999985
No 369
>KOG0333 consensus
Probab=87.06 E-value=1.5 Score=22.48 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=25.5
Q ss_pred CCHHHHHHHCC-CCC--CEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 20134554205-766--406787612675146787520244434320
Q gi|254780952|r 284 QFSHILNFQKD-FKD--ANIIKLEQNYRSTTHILNTANKLISHNKQR 327 (685)
Q Consensus 284 ~~~~~~~f~~~-f~~--~~~i~L~~NyRS~~~Ii~~an~li~~n~~r 327 (685)
-|.=+.++++. ||. .. +.+.-||-.+.+|...|+-+...|.+-
T Consensus 240 lpnplrnwEE~~~P~e~l~-~I~~~~y~eptpIqR~aipl~lQ~rD~ 285 (673)
T KOG0333 240 LPNPLRNWEESGFPLELLS-VIKKPGYKEPTPIQRQAIPLGLQNRDP 285 (673)
T ss_pred CCCCCCCHHHCCCCHHHHH-HHHHCCCCCCCHHHHHHCCCHHCCCCE
T ss_conf 8962337322389889999-997348999846788631101014772
No 370
>KOG0987 consensus
Probab=86.88 E-value=1.3 Score=22.87 Aligned_cols=74 Identities=23% Similarity=0.174 Sum_probs=47.0
Q ss_pred HHHHHHCCCHHHHH-------HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHH
Q ss_conf 58887629988999-------98538989669995889883589999999999808999788676211479999999999
Q gi|254780952|r 23 VPNYLKGLNAQQTH-------AVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRL 95 (685)
Q Consensus 23 ~~~~l~~Ln~~Q~~-------av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri 95 (685)
-..+..-||++|+. +|. ...|++.-.+.+|||||+.+-.-+.-+-.. | ...++++.+.-|+.
T Consensus 111 ~~~~~~~l~~eqk~v~d~~~~~v~-~~~g~~ff~g~~gtgKt~l~~t~~~~~~~~-g---~~~~~v~~s~ia~~------ 179 (540)
T KOG0987 111 HAELPKKLTPEQKRVYDAILEAVE-NNLGGVFFYGFGGTGKTYLLKTLIAALRSR-G---KIVLNVASSGIAAL------ 179 (540)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCCEEEHHHHHHHHHHC-C---CCEEEEEECCHHHH------
T ss_conf 102366559877637999999985-478765343678865402378899999745-8---71466533012443------
Q ss_pred HHHCCCCCCEEEEHHHHH
Q ss_conf 985164587896178999
Q gi|254780952|r 96 ACYLGEKIPRIQTFHSFC 113 (685)
Q Consensus 96 ~~~l~~~~~~i~T~Hsf~ 113 (685)
-.....|.||++
T Consensus 180 ------~l~gg~T~~s~f 191 (540)
T KOG0987 180 ------LLEGGRTAHSRF 191 (540)
T ss_pred ------HCCCCCCCCHHH
T ss_conf ------156885300431
No 371
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=86.61 E-value=1.2 Score=23.21 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=19.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 3898966999588988358999999999980
Q gi|254780952|r 40 IPDDTPLLILAGAGTGKTTVLIARMLHLICH 70 (685)
Q Consensus 40 ~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~ 70 (685)
+..+.|++|.+-+||||+. +|+.|.+
T Consensus 26 A~~~~pVLI~GE~GtGK~~-----~Ar~IH~ 51 (325)
T PRK11608 26 APLDKPVLIIGERGTGKEL-----IASRLHY 51 (325)
T ss_pred HCCCCCEEEECCCCCCHHH-----HHHHHHH
T ss_conf 6889998988989837999-----9999996
No 372
>KOG0948 consensus
Probab=86.61 E-value=1.2 Score=23.15 Aligned_cols=67 Identities=21% Similarity=0.243 Sum_probs=48.4
Q ss_pred CCCCCCCCC--------CCHHHHHHCCCHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 232113683--------2158887629988999985389-8966999588988358999999999980899978867621
Q gi|254780952|r 12 HILKGDFVP--------SCVPNYLKGLNAQQTHAVTIPD-DTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 12 ~~~~~~~~~--------~~~~~~l~~Ln~~Q~~av~~~~-~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
.+-+.||.| .++..|.=.|++=|.+||.+-. +-.+||.|---+|||-+..+-||.-+.+. .+++..+
T Consensus 104 vP~~~dY~p~~~~~~~~~pAk~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k----QRVIYTS 179 (1041)
T KOG0948 104 VPPNYDYTPLLPKIFGKPPAKTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK----QRVIYTS 179 (1041)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC----CEEEEEC
T ss_conf 588634374454558999535788434806765453112796389984057885237999999998764----8589607
No 373
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=86.53 E-value=0.44 Score=26.16 Aligned_cols=17 Identities=41% Similarity=0.698 Sum_probs=15.1
Q ss_pred EEEEECCCCCHHHHHHH
Q ss_conf 69995889883589999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIA 62 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ 62 (685)
-+|++.||||||+.|.+
T Consensus 114 YlviG~~gsGKTt~l~~ 130 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQN 130 (1169)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 89978999866899983
No 374
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=86.44 E-value=1.1 Score=23.58 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=40.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHH-----------------------HHHHHHHHHHCCCC
Q ss_conf 6999588988358999999999980899978867621147999-----------------------99999999851645
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAI-----------------------QEMKNRLACYLGEK 102 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA-----------------------~el~~Ri~~~l~~~ 102 (685)
=+|==-.|||||-|+.. +|+++.+. ..-..|++||=-+.-- .++++-+... ..
T Consensus 276 G~IWHtqGSGKTltm~~-~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~--~~ 351 (962)
T COG0610 276 GYIWHTQGSGKTLTMFK-LARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDG--KG 351 (962)
T ss_pred EEEEECCCCCHHHHHHH-HHHHHHHC-CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC--CC
T ss_conf 38984069837899999-99999836-5999699996728899999999999887632044445799999998658--98
Q ss_pred CCEEEEHHHHHHHHHHH
Q ss_conf 87896178999999998
Q gi|254780952|r 103 IPRIQTFHSFCASILRK 119 (685)
Q Consensus 103 ~~~i~T~Hsf~~~il~~ 119 (685)
..-|.|||-|...+...
T Consensus 352 ~ii~TTIQKf~~~~~~~ 368 (962)
T COG0610 352 KIIVTTIQKFNKAVKED 368 (962)
T ss_pred CEEEEEECCCCHHHHCC
T ss_conf 48999710264333333
No 375
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=86.36 E-value=0.71 Score=24.77 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=33.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEHH
Q ss_conf 69995889883589999999999808999788676211479999999999985164587896178
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQTFH 110 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~T~H 110 (685)
.||++|++|||+.- +++ |+...+ ...+.+-| .+.-=.||++||..+-........|+-
T Consensus 4 ~LVtGG~rSGKS~~-AE~---la~~~~--~~~~YiAT-~~~~D~Em~~RI~~Hr~~R~~~w~TiE 61 (170)
T PRK05800 4 ILVTGGARSGKSRF-AER---LAAQSG--LQVLYIAT-AQPLDDEMAARIAHHRQRRPAHWQTVE 61 (170)
T ss_pred EEEECCCCCCHHHH-HHH---HHHHCC--CCEEEEEC-CCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99979876348999-999---998569--98299975-888887899999999973789957996
No 376
>PRK05541 adenylylsulfate kinase; Provisional
Probab=86.35 E-value=1 Score=23.70 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=17.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 699958898835899999999998089
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKE 72 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~ 72 (685)
+-+++-||||||| |+..+...|...+
T Consensus 10 iW~TGLsGSGKTT-iA~~l~~~L~~~g 35 (176)
T PRK05541 10 IWITGLAGSGKTT-IAKALYERLKLKY 35 (176)
T ss_pred EEEECCCCCCHHH-HHHHHHHHHHHCC
T ss_conf 9978999998999-9999999999759
No 377
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=86.34 E-value=0.93 Score=23.94 Aligned_cols=33 Identities=33% Similarity=0.564 Sum_probs=19.5
Q ss_pred CCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 96699958-8988358999999999980899978867621
Q gi|254780952|r 44 TPLLILAG-AGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 44 ~~~lV~Ag-aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
=|+-|+.| -||||||.| + ++|.+. .-.+|.+|-
T Consensus 4 IPVtiltGFLGaGKTTlL-~---~lL~~~--~~~riaViv 37 (317)
T PRK11537 4 IAVTLLTGFLGAGKTTLL-R---HILNEQ--HGYKIAVIE 37 (317)
T ss_pred CCEEEEEECCCCCHHHHH-H---HHHHCC--CCCCEEEEE
T ss_conf 688998308888999999-9---997277--899789998
No 378
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=86.34 E-value=0.82 Score=24.33 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=16.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 66999588988358999999999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHL 67 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~L 67 (685)
++-|+|-.|||||+ |++++.|.
T Consensus 1 Ni~iigH~~aGKTt-L~E~lL~~ 22 (268)
T cd04170 1 NIALVGHSGSGKTT-LAEALLYA 22 (268)
T ss_pred CEEEEECCCCCHHH-HHHHHHHH
T ss_conf 98999089999899-99999996
No 379
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=86.17 E-value=0.92 Score=23.99 Aligned_cols=20 Identities=5% Similarity=-0.062 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCCCCHHHHH
Q ss_conf 21112321136832158887
Q gi|254780952|r 8 SHFSHILKGDFVPSCVPNYL 27 (685)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l 27 (685)
|+-..-|++.-.|++++..+
T Consensus 81 Rr~~~~Yp~~~F~d~~~~~i 100 (815)
T PRK13873 81 RRPAADYPASDFPDPASALV 100 (815)
T ss_pred EEECCCCCCCCCCCHHHHHH
T ss_conf 60368889776886799999
No 380
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.02 E-value=1.9 Score=21.89 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=15.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 699958898835899999999998089
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKE 72 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~ 72 (685)
+-+++-||||||+ |+..+..-|...+
T Consensus 7 iWltGlsgSGKTT-ia~~l~~~L~~~~ 32 (175)
T PRK00889 7 VWFTGLSGAGKTT-ISHALAEKLRARG 32 (175)
T ss_pred EEEECCCCCCHHH-HHHHHHHHHHHCC
T ss_conf 9988989999999-9999999999869
No 381
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=86.01 E-value=1.7 Score=22.21 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=50.3
Q ss_pred CCCEEEEEC-CCCCHHHHHHHHHH-HHHHCCCCCHHHEEEEE-ECHHHHHHHHHHHH-HHCC------CCCCEEEEHHHH
Q ss_conf 896699958-89883589999999-99980899978867621-14799999999999-8516------458789617899
Q gi|254780952|r 43 DTPLLILAG-AGTGKTTVLIARML-HLICHKEIPPSKILAMT-FTNQAIQEMKNRLA-CYLG------EKIPRIQTFHSF 112 (685)
Q Consensus 43 ~~~~lV~Ag-aGsGKT~~L~~ri~-~Ll~~~~~~p~~Il~iT-FT~~AA~el~~Ri~-~~l~------~~~~~i~T~Hsf 112 (685)
.|-|+++.| -||||.|.|=.-++ ||.+.+.+--.+.=.++ -+.+...||-+ |+ +.+| .-.|+|+|++
T Consensus 33 aGEcv~L~G~SGaGKSTlLk~lYaNYlp~~G~i~~~H~G~~~DL~~a~pr~vl~-vRr~tiGYVSQFLRViPRvsale-- 109 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLE-VRRKTIGYVSQFLRVIPRVSALE-- 109 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCHHHHHH-HHHHHCCCEEEEEEECCCCCHHH--
T ss_conf 673588536888767899997663047468677776240476750768457787-73003351555303128867288--
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999984998487989807289999999999999739985478
Q gi|254780952|r 113 CASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDY 156 (685)
Q Consensus 113 ~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 156 (685)
++.+=....|.+ ...+..=.++++..+++.++-|
T Consensus 110 ---vV~ePL~~~G~~-------~~~A~~~A~~LL~rLniPERLW 143 (224)
T TIGR02324 110 ---VVAEPLLERGVP-------REAARARARELLARLNIPERLW 143 (224)
T ss_pred ---HHHHHHHHCCCH-------HHHHHHHHHHHHHHCCCCHHHC
T ss_conf ---887879872895-------8999999999997557402442
No 382
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=85.99 E-value=1.2 Score=23.22 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=18.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 6999588988358999999999980
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICH 70 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~ 70 (685)
+.|.+.||+|||+.+-.-|.+--.+
T Consensus 42 VavvGPpgvGKtTLiksLvk~ytk~ 66 (225)
T cd01882 42 VAVVGPPGVGKTTLIKSLVKNYTKQ 66 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9998989977889999999998544
No 383
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=85.98 E-value=0.74 Score=24.65 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=15.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHH
Q ss_conf 9669995889883589999999
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARML 65 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~ 65 (685)
.|+|.-++||.|||+ |++-|+
T Consensus 52 dH~Ll~GPPGlGKTT-LA~iiA 72 (328)
T PRK00080 52 DHVLLYGPPGLGKTT-LANIIA 72 (328)
T ss_pred CCEEEECCCCCCHHH-HHHHHH
T ss_conf 805765889988999-999999
No 384
>COG1158 Rho Transcription termination factor [Transcription]
Probab=85.88 E-value=1.1 Score=23.46 Aligned_cols=67 Identities=13% Similarity=0.272 Sum_probs=32.2
Q ss_pred HHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHH----CCCCCHHHHHH
Q ss_conf 42057664067876126751467875202444343201012222102355674488731553100----00000013666
Q gi|254780952|r 291 FQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSE----LSTIIQEIINI 366 (685)
Q Consensus 291 f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~E----a~~Ia~~I~~l 366 (685)
..+.+|++..+.|-..=| +.++.+.-. +.+ +.|..-.|+.+... |+.|.++.+.+
T Consensus 197 It~N~Pe~~LiVLLIDER-PEEVTdmqr---------------sV~-----geViaSTFDepp~~HvqVAE~viEkAKRl 255 (422)
T COG1158 197 ITTNHPECELIVLLIDER-PEEVTDMQR---------------SVK-----GEVVASTFDEPPSRHVQVAEMVIEKAKRL 255 (422)
T ss_pred HHCCCCCEEEEEEEECCC-CHHHHHHHH---------------HHC-----CEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 863799649999993478-067777887---------------524-----06986448886054689999999999988
Q ss_pred HHHCCCCCHHHHEEC
Q ss_conf 531136530311101
Q gi|254780952|r 367 QNTGMSLNNIAILVR 381 (685)
Q Consensus 367 ~~~g~~~~diAVL~R 381 (685)
.+.| +|+.||.-
T Consensus 256 VE~~---kDVVILLD 267 (422)
T COG1158 256 VEHG---KDVVILLD 267 (422)
T ss_pred HHCC---CCEEEEEH
T ss_conf 8717---86899965
No 385
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=85.80 E-value=1.3 Score=22.92 Aligned_cols=50 Identities=22% Similarity=0.454 Sum_probs=31.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCC---------CCHHHEEEEEECHHHHHHHHHHHHHH
Q ss_conf 99958898835899999999998089---------99788676211479999999999985
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICHKE---------IPPSKILAMTFTNQAIQEMKNRLACY 98 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~~~---------~~p~~Il~iTFT~~AA~el~~Ri~~~ 98 (685)
++.|.+|+|||+.+..-... +..+. ..|.+++.++- ..-..+|+.|+...
T Consensus 5 ~l~g~gG~GKS~lal~lAl~-vA~G~~~~g~~~~~~~~G~Vly~~~-Ed~~~~l~rRl~a~ 63 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALA-MALGKNLFGGGLKVTEPGRVVYLSA-EDPREEIHRRLEAI 63 (239)
T ss_pred EEEECCCCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCEEEEEEC-CCCHHHHHHHHHHH
T ss_conf 99808998889999999999-9759965689854687761999978-89989999999999
No 386
>pfam03976 PPK2 Polyphosphate kinase 2 (PPK2). Inorganic polyphosphate (polyP) plays a role in metabolism and regulation and has been proposed to serve as a energy source in a pre-ATP world. In prokaryotes, the synthesis and utilisation of polyP are catalysed by PPK1, PPK2 and polyphosphatases. Proteins with a single PPK2 domain catalyse polyP-dependent phosphorylation of ADP to ATP, whereas proteins containing 2 fused PPK2 domains phosphorylate AMP to ADP. The structure of PPK2 from Pseudomonas aeruginosa has revealed a a 3-layer alpha/beta/alpha sandwich fold with an alpha-helical lid similar to the structures of microbial thymidylate kinases.
Probab=85.65 E-value=0.66 Score=24.99 Aligned_cols=62 Identities=13% Similarity=0.217 Sum_probs=41.4
Q ss_pred CHHHHHHCCCHHHHHHHHCCCCCCEEEE-EC-CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHH
Q ss_conf 1588876299889999853898966999-58-8988358999999999980899978867621147999999
Q gi|254780952|r 22 CVPNYLKGLNAQQTHAVTIPDDTPLLIL-AG-AGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEM 91 (685)
Q Consensus 22 ~~~~~l~~Ln~~Q~~av~~~~~~~~lV~-Ag-aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el 91 (685)
.++.+-..|-.-|+.+.. .+.|++|+ .| -||||..++- +|. ...+|..+-+.+|..-...|.
T Consensus 10 ~~~~L~~~L~~lQ~~l~~--~~~~viIv~eG~daaGKg~~I~----~l~--~~lDPrg~~v~~~~~pt~eE~ 73 (229)
T pfam03976 10 ELAKLQIELVKLQEWVYA--EGKKLVVIFEGRDAAGKGGAIK----RIT--EALNPRGARIVALPAPTEEER 73 (229)
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCEEEEEECCCCCCCHHHHH----HHH--HHCCCCEEEEEECCCCCHHHH
T ss_conf 999999999999999997--5994899996657787369999----998--625988569986899997884
No 387
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=85.59 E-value=1.1 Score=23.43 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 966999588988358999999999980899978867621
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
.-++|-+.||+|||+.+.+-.+..... + .+++.++
T Consensus 20 ~it~i~G~pG~GKStl~lq~a~~~~~~-g---~~v~Yid 54 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQ-G---KKVAYID 54 (218)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-C---CEEEEEE
T ss_conf 799998999984999999999998636-9---8699996
No 388
>TIGR01360 aden_kin_iso1 adenylate kinase; InterPro: IPR006267 Members of this family are adenylate kinase, 2.7.4.3 from EC. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (IPR006266 from INTERPRO), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in IPR006259 from INTERPRO.; GO: 0004017 adenylate kinase activity, 0005524 ATP binding, 0046034 ATP metabolic process, 0005737 cytoplasm.
Probab=85.36 E-value=0.41 Score=26.43 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=22.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHH
Q ss_conf 6999588988358999999999980899978867621147999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEM 91 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el 91 (685)
..|++||||||=|= ...+++..| ||.-.+.+|
T Consensus 6 iFivGGPGSGKGTQ----C~KiV~KYG----------fTHLSsGdL 37 (191)
T TIGR01360 6 IFIVGGPGSGKGTQ----CEKIVEKYG----------FTHLSSGDL 37 (191)
T ss_pred EEEECCCCCCCCHH----HHHHHHHCC----------CCCCCHHHH
T ss_conf 88865888884013----689886418----------864540678
No 389
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=85.34 E-value=1.2 Score=23.13 Aligned_cols=15 Identities=7% Similarity=0.069 Sum_probs=7.0
Q ss_pred HHHHHHHHEEEEEEC
Q ss_conf 998586411699831
Q gi|254780952|r 617 VGITRAKKKCHLFYT 631 (685)
Q Consensus 617 VA~TRAk~~L~l~~~ 631 (685)
++-.-.|+.-|+..+
T Consensus 779 i~~a~pKrdYy~~s~ 793 (852)
T PRK13891 779 LATAIPKRQYYYVSE 793 (852)
T ss_pred HHCCCCCCEEEEECC
T ss_conf 962485762589879
No 390
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=85.34 E-value=1.4 Score=22.64 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=21.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHE
Q ss_conf 699958898835899999999998089997886
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKI 78 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~I 78 (685)
.+....|=+|=...++..+..|+.. ..|++-.
T Consensus 59 F~le~~Pl~GA~e~~~~~L~~l~~~-~lP~gt~ 90 (864)
T PRK13721 59 FMLEAIPLNGANESIVEALDHMLRT-KLPRGIP 90 (864)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC-CCCCCCC
T ss_conf 8899966779998999999999736-8969985
No 391
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=85.10 E-value=0.41 Score=26.43 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=42.4
Q ss_pred CCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH--CCCCHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 8980728-999999999999973998547898999999866754--1589646121146538999999999755
Q gi|254780952|r 128 TDFAILD-SAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQN--RGWNPKDIPQSSLTEDAEIPKAIYIQYV 198 (685)
Q Consensus 128 ~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~--~~~~~~~~~~~~~~~~~~~~~~iy~~Y~ 198 (685)
.+-+|+| +..-..+|++++..+- ..++.+..+..+-...|+ .-++.++++.. .+.+-.+-..||.+..
T Consensus 17 ~saTv~dse~vl~~~Lkei~~ALL--~~dvn~klv~~l~~Nik~kid~~n~e~~~~g-~nKRk~iq~~vF~EL~ 87 (453)
T TIGR01425 17 SSATVIDSEEVLNEMLKEICTALL--ESDVNVKLVRQLRENIKKKIDKINLEELASG-LNKRKLIQKAVFEELC 87 (453)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 236110448999999999988751--1335267789888878874050351332103-2478999998999989
No 392
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=85.07 E-value=0.76 Score=24.54 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=15.8
Q ss_pred ECCCCCHHHHHHHHHHHHHHH
Q ss_conf 126751467875202444343
Q gi|254780952|r 305 QNYRSTTHILNTANKLISHNK 325 (685)
Q Consensus 305 ~NyRS~~~Ii~~an~li~~n~ 325 (685)
-|+|=..+|+.+|+.++.+.-
T Consensus 97 ~NiRIaRE~~G~A~~~~~yL~ 117 (282)
T TIGR02858 97 LNIRIAREVLGAADKILPYLV 117 (282)
T ss_pred CCEEEEEECCCCCHHHHHHHH
T ss_conf 213302000577566688773
No 393
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=84.96 E-value=1.1 Score=23.48 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=19.0
Q ss_pred CEEE-EECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 6699-9588988358999999999980899978867621
Q gi|254780952|r 45 PLLI-LAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 45 ~~lV-~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
|+.| .+-=||||||.|- +++.+. +-+++.+|.
T Consensus 1 Pv~iitGFLGaGKTTll~----~lL~~~--~~~~~avIv 33 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLN----HILTEQ--HGRKIAVIE 33 (158)
T ss_pred CEEEEEECCCCCHHHHHH----HHHHCC--CCCCEEEEE
T ss_conf 908998488899999999----998478--899779997
No 394
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=84.92 E-value=0.78 Score=24.46 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=15.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHHEEEE
Q ss_conf 6787899-99999998586411699
Q gi|254780952|r 605 EGNVEGE-RRLAYVGITRAKKKCHL 628 (685)
Q Consensus 605 ~~~~eEE-rRL~YVA~TRAk~~L~l 628 (685)
...+++| +++.=.+..||++-|.-
T Consensus 537 a~~ID~evk~ii~~~y~~a~~il~~ 561 (596)
T COG0465 537 AQEIDREVKDIIDEAYERAKELLNE 561 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999889999999999998
No 395
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=84.79 E-value=0.81 Score=24.35 Aligned_cols=18 Identities=33% Similarity=0.800 Sum_probs=10.8
Q ss_pred EEEEECCCCCHHHHHHHHH
Q ss_conf 6999588988358999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARM 64 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri 64 (685)
++|++.+|+|||+ |++|+
T Consensus 2 i~vvG~~~vGKTs-li~r~ 19 (162)
T pfam00071 2 LVLVGDGGVGKSS-LLIRF 19 (162)
T ss_pred EEEECCCCCCHHH-HHHHH
T ss_conf 8999979977999-99999
No 396
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.78 E-value=0.69 Score=24.86 Aligned_cols=21 Identities=48% Similarity=0.479 Sum_probs=15.9
Q ss_pred CCEEEEECCCCCHHHHHHHHH
Q ss_conf 966999588988358999999
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARM 64 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri 64 (685)
.-+++.|+||+|||+.+..-.
T Consensus 38 RL~li~APAGfGKttl~aq~~ 58 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWR 58 (894)
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 389986788775889999999
No 397
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=84.74 E-value=1.3 Score=22.94 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=6.5
Q ss_pred CCEEEEECCCCCHHHHH
Q ss_conf 96699958898835899
Q gi|254780952|r 44 TPLLILAGAGTGKTTVL 60 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L 60 (685)
+.+.|.||+|.|||..+
T Consensus 146 qrigIfggaGvGKTvLl 162 (466)
T PRK09280 146 GKIGLFGGAGVGKTVLI 162 (466)
T ss_pred CEEEEECCCCCCCHHHH
T ss_conf 47985579999800899
No 398
>PRK00131 aroK shikimate kinase; Reviewed
Probab=84.64 E-value=0.96 Score=23.85 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=15.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 896699958898835899999999
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~ 66 (685)
+.++.+++-||||||++ ...++.
T Consensus 4 ~~nI~liG~~GsGKTtv-gk~LA~ 26 (175)
T PRK00131 4 GPNIVLIGMMGAGKSTI-GRLLAK 26 (175)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHH
T ss_conf 98089888999998999-999999
No 399
>KOG0733 consensus
Probab=84.62 E-value=1.5 Score=22.44 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=5.8
Q ss_pred EEEEECCCCCHHH
Q ss_conf 6999588988358
Q gi|254780952|r 46 LLILAGAGTGKTT 58 (685)
Q Consensus 46 ~lV~AgaGsGKT~ 58 (685)
+|+-+.||+|||.
T Consensus 226 vLlHGPPGCGKT~ 238 (802)
T KOG0733 226 VLLHGPPGCGKTS 238 (802)
T ss_pred EEEECCCCCCHHH
T ss_conf 1644899864789
No 400
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=84.47 E-value=0.7 Score=24.82 Aligned_cols=13 Identities=54% Similarity=0.598 Sum_probs=9.8
Q ss_pred EEEECCCCCHHHH
Q ss_conf 9995889883589
Q gi|254780952|r 47 LILAGAGTGKTTV 59 (685)
Q Consensus 47 lV~AgaGsGKT~~ 59 (685)
-|.+.|||||||+
T Consensus 4 tIsG~pGsG~TTv 16 (179)
T COG1102 4 TISGLPGSGKTTV 16 (179)
T ss_pred EECCCCCCCCHHH
T ss_conf 9617999970279
No 401
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=84.41 E-value=1.2 Score=23.24 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=18.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9669995889883589999999999
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
+..+..+.+|+|||. |+..++..+
T Consensus 4 ~~~l~~GPsGvGKT~-lAk~la~~l 27 (168)
T pfam07724 4 GSFLFLGPTGVGKTE-LAKALAELL 27 (168)
T ss_pred EEEEEECCCCCCHHH-HHHHHHHHH
T ss_conf 799988989989999-999999996
No 402
>KOG0331 consensus
Probab=84.32 E-value=2.8 Score=20.62 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=41.4
Q ss_pred CCHHHHHHHHCCCC-CCEEEEECCCCCHHHHHH-HHHHHHHHCCCC--C--HHHEEEEEECHHHHHHHHHHHH
Q ss_conf 99889999853898-966999588988358999-999999980899--9--7886762114799999999999
Q gi|254780952|r 30 LNAQQTHAVTIPDD-TPLLILAGAGTGKTTVLI-ARMLHLICHKEI--P--PSKILAMTFTNQAIQEMKNRLA 96 (685)
Q Consensus 30 Ln~~Q~~av~~~~~-~~~lV~AgaGsGKT~~L~-~ri~~Ll~~~~~--~--p~~Il~iTFT~~AA~el~~Ri~ 96 (685)
.++=|.+..-.-.+ .-++.+|--|||||..-. --|.+|..+.+- . --.+|+|+-||-.|..+..-..
T Consensus 114 PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~ 186 (519)
T KOG0331 114 PTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAR 186 (519)
T ss_pred CCHHHHCCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 8534414465112688657782357862055555799998700444347999869997685999999999999
No 403
>PRK13946 shikimate kinase; Provisional
Probab=84.32 E-value=1.7 Score=22.08 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=19.4
Q ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 8538989669995889883589999999999
Q gi|254780952|r 38 VTIPDDTPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 38 v~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
+.+-...++..++-+|||||++ -..++..+
T Consensus 15 ~~~l~kknIvLIG~mGsGKStv-Gk~LA~~L 44 (195)
T PRK13946 15 RAALGKRTVVLVGLMGAGKSTV-GRRLATML 44 (195)
T ss_pred HHHHCCCCEEEECCCCCCHHHH-HHHHHHHH
T ss_conf 9985899589989999988999-99999997
No 404
>KOG3079 consensus
Probab=84.25 E-value=0.81 Score=24.38 Aligned_cols=19 Identities=32% Similarity=0.753 Sum_probs=14.5
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 69995889883589999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARML 65 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~ 65 (685)
+.|++||||||-| ...||+
T Consensus 11 ifVlGGPGsgKgT-qC~kiv 29 (195)
T KOG3079 11 IFVLGGPGSGKGT-QCEKIV 29 (195)
T ss_pred EEEECCCCCCCCH-HHHHHH
T ss_conf 9997689888226-999999
No 405
>PHA02244 ATPase-like protein
Probab=84.19 E-value=2 Score=21.73 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=18.7
Q ss_pred HHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 420576640678761267514678752024443432010
Q gi|254780952|r 291 FQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFD 329 (685)
Q Consensus 291 f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~ 329 (685)
|.+.|.+..++.|.+==-|.|+++-..|.-++++.-.++
T Consensus 174 f~kaFk~GGLfLlDEiDASnP~aL~~lNaALAN~fm~FP 212 (383)
T PHA02244 174 FYEAFKKGGLFFIDEIDASIPEALIIINSAIANKFFDFA 212 (383)
T ss_pred HHHHHHCCCEEEEEHHCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 999986188799732004487999999899864763476
No 406
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=84.09 E-value=0.89 Score=24.08 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=22.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 6999588988358999999999980899978867621
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
..|++-=||||||. |.+||.| +.-+||.+|-
T Consensus 7 TvvTGFLGaGKTTL----iRhlL~N--A~GkRiAvIV 37 (349)
T TIGR02475 7 TVVTGFLGAGKTTL----IRHLLEN--AEGKRIAVIV 37 (349)
T ss_pred EEEECCCCCCHHHH----HHHHHHC--CCCCEEEEEE
T ss_conf 78737567615899----9999717--4787699998
No 407
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=84.05 E-value=1.4 Score=22.82 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=23.4
Q ss_pred CCCCEEHHHHHHHHHHHHHHH-HHHHHHHCCC
Q ss_conf 012210253210775113468-8787751111
Q gi|254780952|r 229 YHEKIPYIMVDEYQDINTPQY-LLLRLLCQKE 259 (685)
Q Consensus 229 ~~~r~~~ilVDEfQDtn~~Q~-~ll~~L~~~~ 259 (685)
.+.||+.-+|||..=+|..-| +||+.|=+++
T Consensus 113 ~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP 144 (363)
T TIGR02397 113 SKGKYKVYIIDEVHMLSKSAFNALLKTLEEPP 144 (363)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 55443358873230286568999876522798
No 408
>pfam12128 DUF3584 Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. There are two conserved sequence motifs: GKT and YLP.
Probab=83.96 E-value=1.3 Score=22.86 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=23.7
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEE
Q ss_conf 38989669995889883589999999999808999788676
Q gi|254780952|r 40 IPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILA 80 (685)
Q Consensus 40 ~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~ 80 (685)
...+||+-+++.=|+||||+|-. | +--.|.+|.+|+.
T Consensus 14 l~ldGnt~~~GTnG~GKTTlLRl-I---p~FYga~p~rlv~ 50 (1192)
T pfam12128 14 LDLDGHTNICGTNAAGKTTLQRL-I---PLFYGEYPSRIVP 50 (1192)
T ss_pred EECCCCEEEECCCCCCHHHHHHH-H---HHHCCCCHHHCCC
T ss_conf 73378725744888869999989-9---9752897553288
No 409
>PRK10490 sensor protein KdpD; Provisional
Probab=83.94 E-value=2.1 Score=21.56 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=33.8
Q ss_pred CCCCEEEE--ECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHH
Q ss_conf 98966999--58898835899999999998089997886762114799999999999
Q gi|254780952|r 42 DDTPLLIL--AGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLA 96 (685)
Q Consensus 42 ~~~~~lV~--AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~ 96 (685)
..|.+.|- ++||-|||+.|..-...+.. .|++.-==++=|-.|..+..|.+.+.
T Consensus 21 ~rg~lki~lg~a~gvGKty~mL~~a~~~~~-~g~dvvvg~ve~h~r~et~~l~~gl~ 76 (895)
T PRK10490 21 HRGKLKVFFGACAGVGKTWAMLAEAQRLRA-QGLDVVVGVVETHGRKETAALLEGLT 76 (895)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHCCCC
T ss_conf 388668994269998689999999999997-79947999961799689999874866
No 410
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=83.93 E-value=1.8 Score=22.01 Aligned_cols=19 Identities=42% Similarity=0.684 Sum_probs=16.5
Q ss_pred CCCCCCEEEEECCCCCHHH
Q ss_conf 3898966999588988358
Q gi|254780952|r 40 IPDDTPLLILAGAGTGKTT 58 (685)
Q Consensus 40 ~~~~~~~lV~AgaGsGKT~ 58 (685)
+..+.|+||.+-+||||+.
T Consensus 19 a~~~~pVLI~GE~GtGK~~ 37 (168)
T pfam00158 19 APTDATVLITGESGTGKEL 37 (168)
T ss_pred HCCCCCEEEECCCCCCHHH
T ss_conf 5889988998999888899
No 411
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=2 Score=21.64 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=29.3
Q ss_pred CCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHH
Q ss_conf 96699958-89883589999999999808999788676211479999999999
Q gi|254780952|r 44 TPLLILAG-AGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRL 95 (685)
Q Consensus 44 ~~~lV~Ag-aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri 95 (685)
|.+..++| ||-||+|.|.+-.+.+-.. + ++|.+|= .-+...++-|.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~-~----~vLYVsG-EES~~QiklRA 139 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKR-G----KVLYVSG-EESLQQIKLRA 139 (456)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHC-C----CEEEEEC-CCCHHHHHHHH
T ss_conf 6179973689877989999999998705-9----5799967-76789999999
No 412
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=83.72 E-value=1.1 Score=23.43 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=16.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6999588988358999999999980899
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
+-|++|.|||||++. .++.+.|+
T Consensus 5 IgiTG~igsGKStv~-----~~l~~~G~ 27 (199)
T PRK00081 5 IGLTGGIGSGKSTVA-----NIFAELGV 27 (199)
T ss_pred EEEECCCCCCHHHHH-----HHHHHCCC
T ss_conf 995788877799999-----99998899
No 413
>PRK05642 DNA replication initiation factor; Validated
Probab=83.59 E-value=3 Score=20.42 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 966999588988358999999999980899978867621
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
.++.+-+++|||||+.|-. +++-+.+.+ .+++.++
T Consensus 46 ~~l~i~G~~G~GKTHLL~A-~~~~~~~~~---~~~~yl~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA-ACLRFEQRG---EPAVYLP 80 (234)
T ss_pred CEEEEECCCCCCHHHHHHH-HHHHHHHCC---CCEEEEE
T ss_conf 8389988999988999999-999998079---9679978
No 414
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=83.54 E-value=1.7 Score=22.09 Aligned_cols=72 Identities=25% Similarity=0.403 Sum_probs=39.5
Q ss_pred CCCHHHHHHCCCHHHHHHHHCCC---CCCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHH
Q ss_conf 32158887629988999985389---896699958-89883589999999999808999788676211479999999999
Q gi|254780952|r 20 PSCVPNYLKGLNAQQTHAVTIPD---DTPLLILAG-AGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRL 95 (685)
Q Consensus 20 ~~~~~~~l~~Ln~~Q~~av~~~~---~~~~lV~Ag-aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri 95 (685)
-++.|++.+++.+=-| |.- . .|.+..++| ||-||.|.|..=...|- . .-.+||.+|= .-.-+.++-|.
T Consensus 79 ~~e~~rf~s~~~ElDr--VLG-GGivpGsliLiGG~PG~GKSTLLLqV~~~LA-~---~~~~~LYVsG-EES~~Q~klRA 150 (481)
T TIGR00416 79 LEEEPRFSSGFGELDR--VLG-GGIVPGSLILIGGDPGIGKSTLLLQVACQLA-K---NSMKVLYVSG-EESLQQIKLRA 150 (481)
T ss_pred HCCCCEEECCCCCCCE--EEC-CCCCCCCEEEECCCCCCCHHHHHHHHHHHHH-H---CCCCEEEEEE-CCHHHHHHHHH
T ss_conf 2067605306641001--106-7222441698468899635678999999984-0---4881689972-30167788887
Q ss_pred HHHCC
Q ss_conf 98516
Q gi|254780952|r 96 ACYLG 100 (685)
Q Consensus 96 ~~~l~ 100 (685)
.+||
T Consensus 151 -~RLG 154 (481)
T TIGR00416 151 -TRLG 154 (481)
T ss_pred -HHCC
T ss_conf -5455
No 415
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=83.52 E-value=2.1 Score=21.59 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=4.7
Q ss_pred EEEEEECHHH
Q ss_conf 5999953068
Q gi|254780952|r 266 RICCVGDENQ 275 (685)
Q Consensus 266 ~l~vVGD~dQ 275 (685)
++++.+++..
T Consensus 330 si~v~a~~~~ 339 (796)
T COG3451 330 SILVFAKDKE 339 (796)
T ss_pred EEEEECCCHH
T ss_conf 8999819999
No 416
>pfam00406 ADK Adenylate kinase.
Probab=83.41 E-value=0.52 Score=25.70 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=11.6
Q ss_pred EEECCCCCHHHHHHHHHH
Q ss_conf 995889883589999999
Q gi|254780952|r 48 ILAGAGTGKTTVLIARML 65 (685)
Q Consensus 48 V~AgaGsGKT~~L~~ri~ 65 (685)
++++|||||+| .+.+++
T Consensus 1 i~G~PGsGKgT-qa~~La 17 (186)
T pfam00406 1 LLGPPGAGKGT-QAERIV 17 (186)
T ss_pred CCCCCCCCHHH-HHHHHH
T ss_conf 91889898599-999999
No 417
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=83.36 E-value=1.6 Score=22.34 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHC
Q ss_conf 2532107751134-6887877511
Q gi|254780952|r 235 YIMVDEYQDINTP-QYLLLRLLCQ 257 (685)
Q Consensus 235 ~ilVDEfQDtn~~-Q~~ll~~L~~ 257 (685)
.+||||-=.++++ |.+||+-|-.
T Consensus 269 vLFIDEIGELD~lLQnKLLKVLED 292 (616)
T TIGR02903 269 VLFIDEIGELDPLLQNKLLKVLED 292 (616)
T ss_pred EEEEECHHHHHHHHHHHHHHHHCC
T ss_conf 676502112227876324443226
No 418
>KOG1969 consensus
Probab=83.29 E-value=1.4 Score=22.81 Aligned_cols=11 Identities=45% Similarity=0.507 Sum_probs=5.1
Q ss_pred CCCHHHHHHHH
Q ss_conf 29988999985
Q gi|254780952|r 29 GLNAQQTHAVT 39 (685)
Q Consensus 29 ~Ln~~Q~~av~ 39 (685)
-||-+|+.+|.
T Consensus 88 ~lnkr~en~~s 98 (877)
T KOG1969 88 VLNKRQENAVS 98 (877)
T ss_pred HHCCCHHHHCC
T ss_conf 00137043036
No 419
>pfam10236 DAP3 Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=83.25 E-value=2 Score=21.72 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=26.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECH
Q ss_conf 966999588988358999999999980899978867621147
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTN 85 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~ 85 (685)
...++.+.+|||||.+|.+-+.|-..+ +.+++.+-+
T Consensus 24 ~r~vL~G~~GsGKS~~L~q~v~~A~~~------~wiVl~vP~ 59 (274)
T pfam10236 24 VRFVLTGERGSGKSVLLAQAMAYALTQ------GWVVLHVPE 59 (274)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC------CEEEEECCC
T ss_conf 189988979977999999999999859------989998498
No 420
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=83.15 E-value=1.3 Score=23.04 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=6.7
Q ss_pred EEEEECHHHHH-HHCCCC
Q ss_conf 99995306886-311332
Q gi|254780952|r 267 ICCVGDENQCI-YEWRGA 283 (685)
Q Consensus 267 l~vVGD~dQsI-Y~fRGA 283 (685)
+++++-.+++- -+||.+
T Consensus 199 v~V~a~~depp~~R~~~~ 216 (449)
T TIGR03305 199 VMVFGQMNEPPGARFRVG 216 (449)
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999836989879999999
No 421
>PRK13531 regulatory ATPase RavA; Provisional
Probab=83.10 E-value=1 Score=23.60 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=29.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHH
Q ss_conf 989669995889883589999999999808999788676211479
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQ 86 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~ 86 (685)
.+.|++++++|||||+. |+.|+...+. +...-..|..-||.-
T Consensus 38 agehvlllGPPGtAKS~-larrl~~~~~--~a~~FeyLltRFstP 79 (498)
T PRK13531 38 SGESVFLLGPPGIAKSL-IARRLKFAFQ--HARAFEYLMTRFSTP 79 (498)
T ss_pred CCCCEEEECCCCHHHHH-HHHHHHHHHC--CCHHHHHHHHCCCCH
T ss_conf 28946988899513889-9999999855--740899998746988
No 422
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=83.04 E-value=1.1 Score=23.55 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=12.7
Q ss_pred EEEECCCCCHHHHHHHHHHH
Q ss_conf 99958898835899999999
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~ 66 (685)
-|.+|-|||||+ |+..+..
T Consensus 3 gIaG~S~SGKTT-la~~L~~ 21 (187)
T cd02024 3 GISGVTNSGKTT-LAKLLQR 21 (187)
T ss_pred EEECCCCCCHHH-HHHHHHH
T ss_conf 996888875999-9999999
No 423
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=83.02 E-value=3.2 Score=20.27 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHHHC
Q ss_conf 28999999999999973
Q gi|254780952|r 133 LDSAESRTIIKQLLKDL 149 (685)
Q Consensus 133 ~~~~~~~~~~~~~~~~~ 149 (685)
++...-..++.++++.+
T Consensus 154 Lsqk~irklI~~aL~~~ 170 (677)
T PRK10917 154 LKQKTLRKLIKQALERL 170 (677)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 78699999999999874
No 424
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=83.02 E-value=0.66 Score=24.97 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 8966999588988358999999999980899978867621
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
+--+=|-|+||+||||.|. +|.+ | ..-.|.+|-
T Consensus 153 GQRiGIFA~aG~GKSTLL~-----~i~~-g-~~ADv~V~A 185 (430)
T TIGR02546 153 GQRIGIFAGAGVGKSTLLG-----MIAR-G-ASADVNVIA 185 (430)
T ss_pred CCEEEEEECCCCCHHHHHH-----HHHC-C-CCCCEEEEE
T ss_conf 5305787088861668999-----9861-8-988789986
No 425
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=82.92 E-value=1.6 Score=22.33 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=16.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6999588988358999999999980899
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
+-|++--|||||+.+ ++++..+..+|.
T Consensus 5 l~ivG~k~SGKTTLi-e~lv~~L~~~G~ 31 (161)
T COG1763 5 LGIVGYKNSGKTTLI-EKLVRKLKARGY 31 (161)
T ss_pred EEEEECCCCCHHHHH-HHHHHHHHHCCC
T ss_conf 999962799734289-999999975793
No 426
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=82.88 E-value=0.8 Score=24.40 Aligned_cols=32 Identities=38% Similarity=0.677 Sum_probs=18.7
Q ss_pred CCCEE-EEECCCCCHHHHHHHHHHHHHHCCCCCH--HHEEE
Q ss_conf 89669-9958898835899999999998089997--88676
Q gi|254780952|r 43 DTPLL-ILAGAGTGKTTVLIARMLHLICHKEIPP--SKILA 80 (685)
Q Consensus 43 ~~~~l-V~AgaGsGKT~~L~~ri~~Ll~~~~~~p--~~Il~ 80 (685)
+|-++ +++.-|||||||| .||. +-+.| ++|+.
T Consensus 26 ~gef~vliGpSGsGKTTtL-----kMIN-rLiept~G~I~i 60 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTL-----KMIN-RLIEPTSGEILI 60 (309)
T ss_pred CCEEEEEECCCCCCHHHHH-----HHHH-CCCCCCCCEEEE
T ss_conf 9728999878997578799-----9996-055888853898
No 427
>PRK08727 hypothetical protein; Validated
Probab=82.82 E-value=2.6 Score=20.85 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=15.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHH
Q ss_conf 8989669995889883589999
Q gi|254780952|r 41 PDDTPLLILAGAGTGKTTVLIA 62 (685)
Q Consensus 41 ~~~~~~lV~AgaGsGKT~~L~~ 62 (685)
....++.+-+++|||||+.|-.
T Consensus 39 ~~~~~lyl~G~~GsGKTHLl~a 60 (233)
T PRK08727 39 QSSDWLYLSGPAGTGKTHLALS 60 (233)
T ss_pred CCCCEEEEECCCCCCHHHHHHH
T ss_conf 8889899989999988999999
No 428
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=82.67 E-value=1.2 Score=23.13 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=18.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 896699958898835899999999
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~ 66 (685)
-.++-|+|-+|+|||+ |++++.+
T Consensus 10 ~RniaIi~H~dAGKTT-LtE~lL~ 32 (526)
T PRK00741 10 RRTFAIISHPDAGKTT-LTEKLLL 32 (526)
T ss_pred CCEEEEECCCCCCHHH-HHHHHHH
T ss_conf 1779999378989899-9999997
No 429
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=82.63 E-value=3.3 Score=20.17 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=22.8
Q ss_pred CCCCEEHHHHHHHHHHHH-HHHHHHHHHHCCC
Q ss_conf 012210253210775113-4688787751111
Q gi|254780952|r 229 YHEKIPYIMVDEYQDINT-PQYLLLRLLCQKE 259 (685)
Q Consensus 229 ~~~r~~~ilVDEfQDtn~-~Q~~ll~~L~~~~ 259 (685)
..++|+.++|||..-++. ++..|++.|-+..
T Consensus 118 ~~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP 149 (462)
T PRK06305 118 SKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPP 149 (462)
T ss_pred CCCCEEEEEEECHHHCCHHHHHHHHHHHHCCC
T ss_conf 67750599981521179999999999861898
No 430
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=82.62 E-value=0.68 Score=24.90 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=8.9
Q ss_pred CCCEEEEEECCCCC
Q ss_conf 89369996113455
Q gi|254780952|r 568 SNCIQIMTLHAAKG 581 (685)
Q Consensus 568 ~d~V~i~TIH~SKG 581 (685)
..++.|+-||-.|-
T Consensus 296 ~GR~eIlkiHTr~~ 309 (364)
T TIGR01242 296 EGRLEILKIHTRKM 309 (364)
T ss_pred CCHHHHHHHHHCCC
T ss_conf 22056655521000
No 431
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=82.60 E-value=1.8 Score=22.03 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=19.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 966999588988358999999999980
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICH 70 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~ 70 (685)
.|++|.+..|||||+.|-.-+..+-..
T Consensus 186 qH~li~GTtGtGKS~~ir~LL~qIR~R 212 (732)
T PRK13700 186 QNFCLHGTVGAGKSEVIRRLANYARQR 212 (732)
T ss_pred HEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 126774688888999999999999972
No 432
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=82.56 E-value=1 Score=23.59 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=16.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 966999588988358999999999980899
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEI 73 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~ 73 (685)
.++.+++--|||-.. +|.++...|.
T Consensus 9 k~ih~iGigG~Gmsa-----lA~~l~~~G~ 33 (459)
T PRK00421 9 KRIHFVGIGGIGMSG-----LAEVLLNLGY 33 (459)
T ss_pred CEEEEEEECHHHHHH-----HHHHHHHCCC
T ss_conf 889999866888999-----9999996899
No 433
>PRK06620 hypothetical protein; Validated
Probab=82.41 E-value=1 Score=23.68 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=12.7
Q ss_pred CCEEEEECCCCCHHHHH
Q ss_conf 96699958898835899
Q gi|254780952|r 44 TPLLILAGAGTGKTTVL 60 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L 60 (685)
..++|.+++|||||+.+
T Consensus 45 ~~l~I~Gp~gSGKTHL~ 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CEEEEECCCCCCHHHHH
T ss_conf 55999879999889999
No 434
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=82.33 E-value=1.5 Score=22.55 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=21.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHH
Q ss_conf 699958898835899999999998089997886762114799
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQA 87 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~A 87 (685)
++|++++|+|||+.+- +|+.. .|+=..++++|-+.
T Consensus 4 ivl~GpsG~GK~tl~~----~l~~~---~~~~~~~vs~TTR~ 38 (180)
T TIGR03263 4 IVISGPSGVGKSTLVK----ALLEE---DPNLKFSISATTRK 38 (180)
T ss_pred EEEECCCCCCHHHHHH----HHHHH---CCCCEEEEECCCCC
T ss_conf 9998999889999999----99976---89944887044689
No 435
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=82.25 E-value=1.3 Score=22.95 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=13.8
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 69995889883589999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARML 65 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~ 65 (685)
++++++|||||=| .+.+|+
T Consensus 2 ~~~lGpPGsGKGT-Qa~~i~ 20 (232)
T TIGR01351 2 LILLGPPGSGKGT-QAKRIA 20 (232)
T ss_pred EEEECCCCCCHHH-HHHHHH
T ss_conf 4675598987667-999999
No 436
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=82.23 E-value=2.1 Score=21.58 Aligned_cols=27 Identities=52% Similarity=0.727 Sum_probs=16.6
Q ss_pred CEE-EEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 669-9958898835899999999998089
Q gi|254780952|r 45 PLL-ILAGAGTGKTTVLIARMLHLICHKE 72 (685)
Q Consensus 45 ~~l-V~AgaGsGKT~~L~~ri~~Ll~~~~ 72 (685)
|++ |++--||||||.+..-|..| .+.|
T Consensus 3 Pii~ivG~s~SGKTTLi~kli~~l-~~~G 30 (170)
T PRK10751 3 PLLAIAAWSGTGKTTLLKKLIPAL-CARG 30 (170)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH-HHCC
T ss_conf 779999469999999999999999-9879
No 437
>PRK13947 shikimate kinase; Provisional
Probab=82.20 E-value=1.6 Score=22.27 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=15.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 669995889883589999999999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
++.+++-+|||||++ -.+++..+
T Consensus 3 nI~LiG~mGsGKTti-Gk~La~~L 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTV-GKKVATTL 25 (171)
T ss_pred CEEEECCCCCCHHHH-HHHHHHHH
T ss_conf 589979999988999-99999997
No 438
>KOG2228 consensus
Probab=82.10 E-value=3.5 Score=20.04 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=20.6
Q ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9985389896699958898835899999999
Q gi|254780952|r 36 HAVTIPDDTPLLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 36 ~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~ 66 (685)
.|+. ..+..++++++.|||||..+..+...
T Consensus 43 t~~~-gEsnsviiigprgsgkT~li~~~Ls~ 72 (408)
T KOG2228 43 TILH-GESNSVIIIGPRGSGKTILIDTRLSD 72 (408)
T ss_pred HHHH-CCCCCEEEECCCCCCCEEEEHHHHHH
T ss_conf 9984-47772699814778816740778766
No 439
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=82.09 E-value=2 Score=21.72 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 6999588988358999999999980
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICH 70 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~ 70 (685)
++|++..+||||+.+..-+.+++..
T Consensus 3 v~i~G~~~sGKttl~~~L~~~~~~~ 27 (122)
T pfam03205 3 VLVVGPKDSGKTTLIRKLLNYLKRR 27 (122)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9999489998999999999999987
No 440
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=82.07 E-value=1.2 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=16.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 999588988358999999999980
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICH 70 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~ 70 (685)
-|.+|-|||||+ ++.++..++..
T Consensus 3 gVaG~SGSGKTT-v~~~i~~ifg~ 25 (273)
T cd02026 3 GVAGDSGCGKST-FLRRLTSLFGS 25 (273)
T ss_pred EEECCCCCCHHH-HHHHHHHHHCC
T ss_conf 997888786999-99999998584
No 441
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family; InterPro: IPR004473 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the R subunit (HsdR) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC; the R protein (HsdR) is required for both nuclease and ATPase activity , , , .; GO: 0003677 DNA binding, 0005524 ATP binding, 0009035 Type I site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system.
Probab=81.89 E-value=1.1 Score=23.39 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHEEEE
Q ss_conf 999999998586411699
Q gi|254780952|r 611 ERRLAYVGITRAKKKCHL 628 (685)
Q Consensus 611 ErRL~YVA~TRAk~~L~l 628 (685)
+.+|| =|+.|+-+-.++
T Consensus 759 ~H~L~-QA~aR~NRPfv~ 775 (813)
T TIGR00348 759 DHGLL-QAIARVNRPFVL 775 (813)
T ss_pred CHHHH-HHHHHHCCCEEC
T ss_conf 00267-888763156021
No 442
>PRK06547 hypothetical protein; Provisional
Probab=81.84 E-value=1.3 Score=23.03 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=15.0
Q ss_pred CCCCEEEE---ECCCCCHHHHHHHHHH
Q ss_conf 98966999---5889883589999999
Q gi|254780952|r 42 DDTPLLIL---AGAGTGKTTVLIARML 65 (685)
Q Consensus 42 ~~~~~lV~---AgaGsGKT~~L~~ri~ 65 (685)
.+|++.|+ +.+|||||| |+.+++
T Consensus 11 ~~g~~~iVaIDG~sGaGKTT-LA~~La 36 (184)
T PRK06547 11 CGGDMITVLIDGRSGSGKTT-LAGELA 36 (184)
T ss_pred CCCCEEEEEEECCCCCCHHH-HHHHHH
T ss_conf 59976999986899888899-999999
No 443
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=81.75 E-value=3.6 Score=19.95 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=33.8
Q ss_pred CCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 96699958-89883589999999999808999788676211479999999999985164
Q gi|254780952|r 44 TPLLILAG-AGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE 101 (685)
Q Consensus 44 ~~~lV~Ag-aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~ 101 (685)
|.+..++| ||-||+|.|.+-.+.|-.. + .++|.+|= .-.+..++-|.. +++-
T Consensus 82 GSvvLlgGePGIGKSTLLLQia~~la~~-~---~~vLYvSG-EES~~QIk~RA~-RLg~ 134 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR-G---GKVLYVSG-EESPEQIKLRAD-RLGI 134 (372)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-C---CCEEEEEC-HHHHHHHHHHHH-HHCC
T ss_conf 7179982599886889999999999863-9---93899824-567899998999-8587
No 444
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.46 E-value=0.76 Score=24.54 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=15.0
Q ss_pred EEEEECCCCCHHHHHHH
Q ss_conf 69995889883589999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIA 62 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ 62 (685)
-+|++.||||||+.|..
T Consensus 128 y~viG~pgsGKTtal~~ 144 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN 144 (1188)
T ss_pred EEEECCCCCCCCHHHHC
T ss_conf 58854888984008751
No 445
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=81.43 E-value=2 Score=21.71 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=21.3
Q ss_pred EEEECCCCCHHHHHHHHHH-HHHHCCCCCHHHEEEEEECH
Q ss_conf 9995889883589999999-99980899978867621147
Q gi|254780952|r 47 LILAGAGTGKTTVLIARML-HLICHKEIPPSKILAMTFTN 85 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~-~Ll~~~~~~p~~Il~iTFT~ 85 (685)
+.-+-||||||+ |++.+. ++..+.| -++.+|+|..
T Consensus 3 VLcGLPaAGKTT-Lar~L~~~l~~~~g---w~v~vI~YDd 38 (340)
T TIGR03575 3 VLCGLPAAGKST-LARSLSATLRRERG---WAVAVITYDD 38 (340)
T ss_pred EECCCCCCCHHH-HHHHHHHHHHHCCC---CEEEEEEHHH
T ss_conf 432698787368-99999999864447---6058986212
No 446
>PRK06315 type III secretion system ATPase; Provisional
Probab=81.32 E-value=2 Score=21.60 Aligned_cols=11 Identities=9% Similarity=-0.082 Sum_probs=5.1
Q ss_pred CCEEEEECCCC
Q ss_conf 96699958898
Q gi|254780952|r 44 TPLLILAGAGT 54 (685)
Q Consensus 44 ~~~lV~AgaGs 54 (685)
|+++-..||+.
T Consensus 32 G~~ie~~g~~~ 42 (442)
T PRK06315 32 GMLIKAVVPDV 42 (442)
T ss_pred EEEEEEEECCC
T ss_conf 78999986789
No 447
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=81.17 E-value=1.1 Score=23.37 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=16.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 8966999588988358999999999
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLHL 67 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~L 67 (685)
..++.+++-||||||++- .+++..
T Consensus 4 kknI~LiG~mGsGKstvg-k~LA~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIG-RQLAQQ 27 (172)
T ss_pred CCCEEEECCCCCCHHHHH-HHHHHH
T ss_conf 882898899999889999-999999
No 448
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=81.05 E-value=1.8 Score=21.95 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=22.7
Q ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9998538989669995889883589999999999808
Q gi|254780952|r 35 THAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHK 71 (685)
Q Consensus 35 ~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~ 71 (685)
|.|.+-+.--||.|=++||=|||. .|+|+.+.
T Consensus 78 KAALCGPNPQHVIiYGPPGVGKTA-----AARLVLee 109 (532)
T TIGR02902 78 KAALCGPNPQHVIIYGPPGVGKTA-----AARLVLEE 109 (532)
T ss_pred HHHCCCCCCCEEEEECCCCCCHHH-----HHHHHHHH
T ss_conf 986068689638987886961789-----99999998
No 449
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=81.04 E-value=2 Score=21.69 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=7.0
Q ss_pred CCEEEEECCCCCHHHHH
Q ss_conf 96699958898835899
Q gi|254780952|r 44 TPLLILAGAGTGKTTVL 60 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L 60 (685)
+.+.|.||+|.|||..+
T Consensus 142 qrigIfggaGvGKTvL~ 158 (459)
T PRK12597 142 GKTGLFGGAGVGKTVLM 158 (459)
T ss_pred CEEEEECCCCCCCCHHH
T ss_conf 77774368999821578
No 450
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=80.68 E-value=2 Score=21.64 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH-EEEEEECHHH
Q ss_conf 9669995889883589999999999808999788-6762114799
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSK-ILAMTFTNQA 87 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~-Il~iTFT~~A 87 (685)
.+++++++.|+|||+.+ ..|+.. .|.+ -.++++|-++
T Consensus 2 klivl~GPSG~GK~tl~----~~L~~~---~~~~~~~~vs~TTR~ 39 (182)
T pfam00625 2 RPIVLSGPSGVGKSHIK----KALLDE---YPEKFGYSVSHTTRP 39 (182)
T ss_pred CEEEEECCCCCCHHHHH----HHHHHH---CCCCEEEEEEEECCC
T ss_conf 86999898999999999----999984---866734457655479
No 451
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=80.67 E-value=0.97 Score=23.83 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=16.6
Q ss_pred HHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98667541589646121146538999999999
Q gi|254780952|r 164 KIDYWQNRGWNPKDIPQSSLTEDAEIPKAIYI 195 (685)
Q Consensus 164 ~i~~~k~~~~~~~~~~~~~~~~~~~~~~~iy~ 195 (685)
...++|.+|++++.+..+. .++++.-++.
T Consensus 96 L~~RLk~RGy~~eKI~ENv---eAEi~~vi~~ 124 (180)
T COG1936 96 LYERLKGRGYSEEKILENV---EAEILDVILI 124 (180)
T ss_pred HHHHHHHCCCCHHHHHHHH---HHHHHHHHHH
T ss_conf 9999987699878988779---9999999999
No 452
>PRK07429 phosphoribulokinase; Provisional
Probab=80.62 E-value=1.4 Score=22.84 Aligned_cols=35 Identities=23% Similarity=0.524 Sum_probs=21.2
Q ss_pred CCCCEE--EEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 989669--99588988358999999999980899978867621
Q gi|254780952|r 42 DDTPLL--ILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 42 ~~~~~l--V~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
.+.|++ |.+|-|||||+ ++.+|..++. +++|.+|+
T Consensus 5 ~~rP~IIGIAGgSGSGKTT-v~r~I~~~fg-----~~~VtvI~ 41 (331)
T PRK07429 5 PDRPVIIGVAGDSGCGKST-FLRRLADLFG-----EELVTVIC 41 (331)
T ss_pred CCCCEEEEEECCCCCCHHH-HHHHHHHHHC-----CCCEEEEE
T ss_conf 9999899985788778999-9999999838-----88779994
No 453
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=80.59 E-value=1.9 Score=21.80 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=16.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 89669995889883589999999999
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
+.-+|+.++||||||.... -|++-|
T Consensus 65 GrgiLi~GppgTGKTAlA~-gIa~eL 89 (450)
T COG1224 65 GRGILIVGPPGTGKTALAM-GIAREL 89 (450)
T ss_pred CCEEEEECCCCCCHHHHHH-HHHHHH
T ss_conf 6179997899976889999-999985
No 454
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=80.54 E-value=2 Score=21.73 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=14.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9669995889883589999999999
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
..+|+.++||||||.... -++.-|
T Consensus 51 raiLlaGppGTGKTAlA~-aiakeL 74 (395)
T pfam06068 51 RAVLIAGPPGTGKTALAI-AISKEL 74 (395)
T ss_pred CEEEEECCCCCCHHHHHH-HHHHHH
T ss_conf 389987799988899999-999974
No 455
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=80.53 E-value=1.1 Score=23.33 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=16.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 966999588988358999999999
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHL 67 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~L 67 (685)
.|+.+++-+|||||++ ..+++..
T Consensus 3 ~~I~LiG~mGsGKsti-Gk~LA~~ 25 (172)
T PRK03731 3 QPLFLVGPRGCGKTTV-GMALAQA 25 (172)
T ss_pred CCEEEECCCCCCHHHH-HHHHHHH
T ss_conf 9889988999988999-9999998
No 456
>KOG0347 consensus
Probab=80.49 E-value=3.9 Score=19.67 Aligned_cols=90 Identities=20% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHCC-----CHHHHHHHHCCCCCC--EEEEECCCCCHHHHHHHH-HHHHHHCCCC----------CHHH-E
Q ss_conf 6832158887629-----988999985389896--699958898835899999-9999980899----------9788-6
Q gi|254780952|r 18 FVPSCVPNYLKGL-----NAQQTHAVTIPDDTP--LLILAGAGTGKTTVLIAR-MLHLICHKEI----------PPSK-I 78 (685)
Q Consensus 18 ~~~~~~~~~l~~L-----n~~Q~~av~~~~~~~--~lV~AgaGsGKT~~L~~r-i~~Ll~~~~~----------~p~~-I 78 (685)
++|.+|=.-|+.| ++-|...+-+...|. ++=-|--|||||-...=- +++|+...+. -|.. =
T Consensus 187 ~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~ 266 (731)
T KOG0347 187 FLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIA 266 (731)
T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHCCCHHHCCCHHCCCCCCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCEE
T ss_conf 98999999998647899861044116676546300003334688742441232545433036537654467760576403
Q ss_pred EEEEECHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 76211479999999999985164587896
Q gi|254780952|r 79 LAMTFTNQAIQEMKNRLACYLGEKIPRIQ 107 (685)
Q Consensus 79 l~iTFT~~AA~el~~Ri~~~l~~~~~~i~ 107 (685)
|++|-||--|..++.-+..........|.
T Consensus 267 LV~tPTRELa~QV~~Hl~ai~~~t~i~v~ 295 (731)
T KOG0347 267 LVVTPTRELAHQVKQHLKAIAEKTQIRVA 295 (731)
T ss_pred EEECCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 89637099999999999986134672788
No 457
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=80.42 E-value=1.9 Score=21.80 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=21.8
Q ss_pred CCCCCEEEEECCCC-CHHHHHHHHHHHHHHCCC
Q ss_conf 89896699958898-835899999999998089
Q gi|254780952|r 41 PDDTPLLILAGAGT-GKTTVLIARMLHLICHKE 72 (685)
Q Consensus 41 ~~~~~~lV~AgaGs-GKT~~L~~ri~~Ll~~~~ 72 (685)
++..++-|++.-|| |||+| ++-|++++...|
T Consensus 83 ~Ps~~l~viGvTGTNGKTtt-~~li~~~l~~~G 114 (494)
T TIGR01085 83 HPSKKLKVIGVTGTNGKTTT-TSLIAQLLELLG 114 (494)
T ss_pred CCCCCEEEEEEEECCCCHHH-HHHHHHHHHHCC
T ss_conf 85525168999712874489-999999998679
No 458
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=80.40 E-value=2.3 Score=21.26 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=12.2
Q ss_pred EEEEECCCCCHHHHHH
Q ss_conf 6999588988358999
Q gi|254780952|r 46 LLILAGAGTGKTTVLI 61 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~ 61 (685)
.-|=+.||||||.+-.
T Consensus 15 TQiYGp~G~GKTn~c~ 30 (223)
T TIGR02237 15 TQIYGPPGSGKTNICL 30 (223)
T ss_pred EEEECCCCCCHHHHHH
T ss_conf 8987589986789999
No 459
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=80.19 E-value=1.4 Score=22.82 Aligned_cols=20 Identities=45% Similarity=0.619 Sum_probs=16.1
Q ss_pred CCCCEEEEECCCCCHHHHHH
Q ss_conf 98966999588988358999
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLI 61 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~ 61 (685)
.+...+|.|++|+|||+.|.
T Consensus 68 rGQR~~Ifg~~g~GKt~Ll~ 87 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLG 87 (326)
T ss_pred CCCEEEEECCCCCCCCHHHH
T ss_conf 79878743699998466787
No 460
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=80.18 E-value=1.9 Score=21.77 Aligned_cols=14 Identities=36% Similarity=0.812 Sum_probs=10.8
Q ss_pred EEEEECCCCCHHHH
Q ss_conf 69995889883589
Q gi|254780952|r 46 LLILAGAGTGKTTV 59 (685)
Q Consensus 46 ~lV~AgaGsGKT~~ 59 (685)
++|.+.+||||||+
T Consensus 2 iiv~GvsGsGKSTi 15 (150)
T cd02021 2 IVVMGVSGSGKSTV 15 (150)
T ss_pred EEEECCCCCCHHHH
T ss_conf 89991899999999
No 461
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=80.04 E-value=2.2 Score=21.44 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=6.1
Q ss_pred CCCEEEEEECH
Q ss_conf 88759999530
Q gi|254780952|r 263 QGARICCVGDE 273 (685)
Q Consensus 263 ~~~~l~vVGD~ 273 (685)
.+.-||.||=|
T Consensus 348 kg~IlclvGpP 358 (784)
T PRK10787 348 KGPILCLVGPP 358 (784)
T ss_pred CCCEEEEECCC
T ss_conf 78779964699
No 462
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=80.01 E-value=0.63 Score=25.10 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=16.1
Q ss_pred CCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCC
Q ss_conf 8759999530688631133220134554205766
Q gi|254780952|r 264 GARICCVGDENQCIYEWRGAQFSHILNFQKDFKD 297 (685)
Q Consensus 264 ~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~ 297 (685)
.+.|.=+|+|.- ||. .|.+ .|-..|=|
T Consensus 176 ~Gki~Q~~~Pee-iY~----~P~~--~FvA~FiG 202 (331)
T TIGR01187 176 KGKIAQIGTPEE-IYE----EPSN--LFVARFIG 202 (331)
T ss_pred CCEEEEECCCHH-HHH----CCCC--CCCEEECC
T ss_conf 875888368468-751----7775--31000106
No 463
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=79.97 E-value=2 Score=21.61 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=15.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHH
Q ss_conf 6699958898835899999999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~ 66 (685)
++-|+|-.|||||+ |++++.|
T Consensus 1 Niai~gH~gaGKTt-L~EalL~ 21 (270)
T cd01886 1 NIGIIAHIDAGKTT-TTERILY 21 (270)
T ss_pred CEEEEECCCCCHHH-HHHHHHH
T ss_conf 98999689999889-9999998
No 464
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=79.89 E-value=1.7 Score=22.19 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEEC
Q ss_conf 898835899999999998089997886762114
Q gi|254780952|r 52 AGTGKTTVLIARMLHLICHKEIPPSKILAMTFT 84 (685)
Q Consensus 52 aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT 84 (685)
=|.|||++-++- ++.+...| .++|+|=+.
T Consensus 11 GGVGKTT~avNL-A~~La~~G---~rVLlIDlD 39 (246)
T TIGR03371 11 GGVGRTTLTAAL-ASALKLLG---EPVLAIDLD 39 (246)
T ss_pred CCCCHHHHHHHH-HHHHHHCC---CCEEEEECC
T ss_conf 985499999999-99999689---978999759
No 465
>KOG0780 consensus
Probab=79.77 E-value=2.2 Score=21.34 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHHHHC
Q ss_conf 28999999999999973
Q gi|254780952|r 133 LDSAESRTIIKQLLKDL 149 (685)
Q Consensus 133 ~~~~~~~~~~~~~~~~~ 149 (685)
.++..-...+++++..+
T Consensus 23 ~~~~~l~~~L~eI~~AL 39 (483)
T KOG0780 23 IDETALNTMLKEICRAL 39 (483)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 20778999999999999
No 466
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=79.61 E-value=2.4 Score=21.18 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 69995889883589999999999808999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIP 74 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~ 74 (685)
+..-+.||.|||+.|..-...+. ..|++
T Consensus 8 IylG~apGVGKTy~ML~eA~~l~-~~G~D 35 (211)
T pfam02702 8 IFLGAAPGVGKTYAMLSEAHELL-ERGVD 35 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCCCC
T ss_conf 98535998778999999999999-78995
No 467
>PRK12678 transcription termination factor Rho; Provisional
Probab=79.61 E-value=2.3 Score=21.32 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=13.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999830268899999757
Q gi|254780952|r 535 LRELLSIIEKHETLEGFVLQAP 556 (685)
Q Consensus 535 l~~l~~~~~~~~sl~~fl~~~~ 556 (685)
+..|+..+.+..+-.+||..+.
T Consensus 636 ~e~l~~~l~~t~~N~efl~~~~ 657 (667)
T PRK12678 636 IELLLSRLKKTKSNYEFLMQVQ 657 (667)
T ss_pred HHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999861798899999987
No 468
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.57 E-value=1.7 Score=22.17 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=12.1
Q ss_pred CCCEEEEEC-CCCCHHHHH
Q ss_conf 896699958-898835899
Q gi|254780952|r 43 DTPLLILAG-AGTGKTTVL 60 (685)
Q Consensus 43 ~~~~lV~Ag-aGsGKT~~L 60 (685)
.|-++-+.| -||||||.|
T Consensus 25 ~Gei~gl~G~NGaGKSTLl 43 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLI 43 (173)
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 9939999878997999999
No 469
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=79.43 E-value=2.3 Score=21.28 Aligned_cols=27 Identities=41% Similarity=0.682 Sum_probs=16.9
Q ss_pred CEEEEECC--CCCHHHHHHHHHHHHHHCCC
Q ss_conf 66999588--98835899999999998089
Q gi|254780952|r 45 PLLILAGA--GTGKTTVLIARMLHLICHKE 72 (685)
Q Consensus 45 ~~lV~Aga--GsGKT~~L~~ri~~Ll~~~~ 72 (685)
+-+|+||+ |+|||++-+.-+..|. +++
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL~-~rg 29 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRALR-RRG 29 (451)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHH-HCC
T ss_conf 93599548888858999999999998-668
No 470
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=79.37 E-value=1.9 Score=21.90 Aligned_cols=31 Identities=39% Similarity=0.562 Sum_probs=21.2
Q ss_pred EEEECCCC--CHHHHHHHHHHHHHHCC-CCCHHH
Q ss_conf 99958898--83589999999999808-999788
Q gi|254780952|r 47 LILAGAGT--GKTTVLIARMLHLICHK-EIPPSK 77 (685)
Q Consensus 47 lV~AgaGs--GKT~~L~~ri~~Ll~~~-~~~p~~ 77 (685)
+|+||-+| |||+.-+.-.++|...+ +|.|-+
T Consensus 2 VviAGt~S~vGKT~I~~g~m~~L~~~~~~VQ~fK 35 (464)
T TIGR00379 2 VVIAGTSSKVGKTTISTGIMKALSRRKLEVQPFK 35 (464)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 7883056875478999999999861863246544
No 471
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=79.35 E-value=3.3 Score=20.20 Aligned_cols=36 Identities=14% Similarity=0.422 Sum_probs=24.0
Q ss_pred CEEEEEC--CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEEC
Q ss_conf 6699958--898835899999999998089997886762114
Q gi|254780952|r 45 PLLILAG--AGTGKTTVLIARMLHLICHKEIPPSKILAMTFT 84 (685)
Q Consensus 45 ~~lV~Ag--aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT 84 (685)
|+.++|- =|+|||||-++-.+.|... | .++++|=+.
T Consensus 1 hIIaVaNqKGGvGKTTtavnLA~aLA~~-G---~rVllIDlD 38 (261)
T pfam09140 1 HVIVVGNEKGGSGKSTTAVHVAVALLYL-G---ARVATIDLD 38 (261)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-C---CCEEEEECC
T ss_conf 9799971789872999999999999988-9---978999799
No 472
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=79.25 E-value=1.3 Score=22.98 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=13.7
Q ss_pred CCCEE-EEECCCCCHHHHH
Q ss_conf 89669-9958898835899
Q gi|254780952|r 43 DTPLL-ILAGAGTGKTTVL 60 (685)
Q Consensus 43 ~~~~l-V~AgaGsGKT~~L 60 (685)
.|-.+ ++++-||||||+|
T Consensus 30 ~Gef~tlLGPSGcGKTTlL 48 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLL 48 (352)
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 8868999899888889999
No 473
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=79.25 E-value=2 Score=21.64 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=22.2
Q ss_pred CCCCCEE---EEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEE
Q ss_conf 8989669---99588988358999999999980899978867621
Q gi|254780952|r 41 PDDTPLL---ILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMT 82 (685)
Q Consensus 41 ~~~~~~l---V~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iT 82 (685)
+..|+.. |++.||.||.|.+-.-+..|+. .| .++.+|.
T Consensus 33 p~~GnA~~vG~TG~PGaGKSTl~~~l~~~lrR-rG---~~VaViA 73 (333)
T TIGR00750 33 PKTGNAHVVGITGVPGAGKSTLVEKLIMELRR-RG---LKVAVIA 73 (333)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC---CEEEEEE
T ss_conf 43279078766468888577799999899976-59---7689998
No 474
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=79.11 E-value=3.9 Score=19.65 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=17.1
Q ss_pred CCCEEHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 122102532107751134-68878775
Q gi|254780952|r 230 HEKIPYIMVDEYQDINTP-QYLLLRLL 255 (685)
Q Consensus 230 ~~r~~~ilVDEfQDtn~~-Q~~ll~~L 255 (685)
...++.|+|||...++.- |..+++.+
T Consensus 107 ~~~~kviiidead~mt~~A~nallk~l 133 (325)
T COG0470 107 EGGYKVVIIDEADKLTEDAANALLKTL 133 (325)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 677269997320326988887675433
No 475
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=79.04 E-value=4.3 Score=19.36 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=35.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCCEEEE-ECCCCCHHHHHHHHHHHHHH------CCCCCHHHEEE
Q ss_conf 211123211368321588876299889999853898966999-58898835899999999998------08999788676
Q gi|254780952|r 8 SHFSHILKGDFVPSCVPNYLKGLNAQQTHAVTIPDDTPLLIL-AGAGTGKTTVLIARMLHLIC------HKEIPPSKILA 80 (685)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~Ln~~Q~~av~~~~~~~~lV~-AgaGsGKT~~L~~ri~~Ll~------~~~~~p~~Il~ 80 (685)
+-|..++..++.|++-- -++-|+=-.-+. ..|...++ +--|+|||+.+..-...|.. +....|+.++.
T Consensus 58 ~~f~~v~a~~~~~~eWd---rs~~P~lId~~f--r~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvly 132 (402)
T COG3598 58 QSFIQVQAEAMRLSEWD---RSNSPQLIDEFF--RKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLY 132 (402)
T ss_pred HHEEEEHHHHCCHHHCC---CCCCHHHHHHHH--HCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 31067204115765517---311756635776--5170589844886237689999999998647774533558880799
Q ss_pred EEE
Q ss_conf 211
Q gi|254780952|r 81 MTF 83 (685)
Q Consensus 81 iTF 83 (685)
+|-
T Consensus 133 vsl 135 (402)
T COG3598 133 VSL 135 (402)
T ss_pred EEE
T ss_conf 982
No 476
>PRK08356 hypothetical protein; Provisional
Probab=79.01 E-value=2 Score=21.70 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=20.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHH
Q ss_conf 69995889883589999999999808999788676211479999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQ 89 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~ 89 (685)
+-|++.|||||+++ +..+.+.|. ..++|..--..
T Consensus 8 IgitG~~gSGK~tv-----a~~l~~~G~-----~~~s~sd~lrd 41 (195)
T PRK08356 8 VGIAGKIAAGKTTV-----AKFLEELGF-----CRISCSEPLID 41 (195)
T ss_pred EEEECCCCCCHHHH-----HHHHHHCCC-----EEEECCHHHHH
T ss_conf 99858998878999-----999998699-----28842278999
No 477
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=78.97 E-value=3 Score=20.47 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC-CCCCHHHEEEEEECH
Q ss_conf 6999588988358999999999980-899978867621147
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICH-KEIPPSKILAMTFTN 85 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~-~~~~p~~Il~iTFT~ 85 (685)
+++-+-=||||| |.++.++.++.+ .|. ++.||+
T Consensus 5 iviEGiDGaGKT-T~~~~l~~~l~~l~g~------~~~~t~ 38 (211)
T TIGR00041 5 IVIEGIDGAGKT-TQLNLLKKLLKELEGY------KVLFTR 38 (211)
T ss_pred EEEECCCCCCHH-HHHHHHHHHHHHHCCC------EEEEEE
T ss_conf 888511587589-9999999997751383------478871
No 478
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=78.95 E-value=1.9 Score=21.89 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 699958898835899999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~ 66 (685)
++|++.+|+||| +|+.|+..
T Consensus 3 i~vvG~~~vGKT-sli~r~~~ 22 (162)
T cd04123 3 VVLLGEGRVGKT-SLVLRYVE 22 (162)
T ss_pred EEEECCCCCCHH-HHHHHHHH
T ss_conf 999999996799-99999983
No 479
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=78.86 E-value=2 Score=21.61 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 69995889883589999999999808999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIP 74 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~ 74 (685)
+-|++|-|||||+ ++.++.+.|++
T Consensus 3 IgiTG~IgsGKSt-----v~~~l~~~G~~ 26 (179)
T pfam01121 3 VGLTGGIGSGKST-----VANLFADLGVP 26 (179)
T ss_pred EEEECCCCCCHHH-----HHHHHHHCCCC
T ss_conf 9985786478999-----99999987991
No 480
>TIGR00606 rad50 rad50; InterPro: IPR004584 Rad50 is involved in recombination, recombinational repair, and/or non-homologous end joining. It is a component of an exonuclease complex with MRE11 homologs. The Saccharomyces cerevisiae Rad50/MRE11 complex possesses single-stranded endonuclease activity and ATP-dependent double-strand-specific exonuclease activity. Rad50 provides an ATP-dependent control of MRE11 by unwinding and repositioning DNA ends into the MRE11 active site. This family is distantly related to the SbcC family of bacterial proteins. When the N- and C-terminal globular regions of Rad50 from Pyrococcus furiosus P58301 from SWISSPROT are co-expressed in Escherichia coli, they spontaneously associate to form a stable complex that possesses ATP-binding and weak ATP-hydrolysing activities. The structure formed is known as the Rad50 catalytic domain (Rad50cd1). In the presence of ATP, two Rad50cd1 molecules interact via their ATP-binding and highly conserved 'signature' motifs to form a dimer. As ATP is buried deep within this dimer interface, the two Rad50cd1 molecules may have to completely disengage after ATP hydrolysis to allow the release of ADP before binding of a new ATP molecule. ATP binding is also accompanied by a 30° rotation of two distinct domains within each Rad50cd1 part of the dimer. This rotation and dimerisation creates a positively charged surface which, potentially, could provide a DNA-binding site capable of accommodating two DNA molecules. The Mre11-docking site within Rad50 has been mapped to two 40-residue heptad-repeat sequences that lie adjacent to the N- and C-terminal ATPase segments. A distinct region within this domain forms a conserved hydrophobic patch that is believed to be the actual Mre11-binding site and lies immediately adjacent to the putative DNA-binding site of Rad50. As Rad50 dimerises in the presence of ATP and forms a stoichiometric complex with Mre11 (one Mre11 subunit binding to one Rad50 subunit), it is possible that the MR complex forms a closely coordinated DNA-binding unit that has the potential to act on two DNA molecules simultaneously. Within this unit, ATP-dependent control of nuclease action might be achieved via Rad50 unwinding or repositioning DNA ends into the active-site of Mre11 . ; GO: 0005524 ATP binding, 0006281 DNA repair, 0030870 Mre11 complex.
Probab=78.63 E-value=1.4 Score=22.77 Aligned_cols=28 Identities=32% Similarity=0.676 Sum_probs=0.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 999588988358999999999980899978
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICHKEIPPS 76 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~ 76 (685)
+++++-|+||||++- ...-|..|..||.
T Consensus 32 ~l~GPNG~GKTT~IE--~L~y~~TG~~P~~ 59 (1328)
T TIGR00606 32 LLVGPNGAGKTTIIE--ALKYVTTGDFPPG 59 (1328)
T ss_pred EEECCCCCCHHHHHH--HHHHHCCCCCCCC
T ss_conf 012778875258987--5433204889888
No 481
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=78.53 E-value=2.3 Score=21.21 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=0.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6699958898835899999999998089
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKE 72 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~ 72 (685)
|+||.++-||||| .+.+++..-|..+|
T Consensus 210 h~L~~GTtG~GKs-~~lr~LL~~iR~rG 236 (613)
T TIGR02759 210 HILIHGTTGSGKS-VALRKLLRWIRQRG 236 (613)
T ss_pred CEEEECCCCCHHH-HHHHHHHHHHHHCC
T ss_conf 5266454174389-99999999998639
No 482
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=78.50 E-value=2.1 Score=21.58 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=0.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHH
Q ss_conf 6699958898835899999999
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~ 66 (685)
++-|+|--||||| ||++++.|
T Consensus 4 niai~gH~gaGKT-tL~EalL~ 24 (267)
T cd04169 4 TFAIISHPDAGKT-TLTEKLLL 24 (267)
T ss_pred EEEEECCCCCCHH-HHHHHHHH
T ss_conf 7999847999989-99999998
No 483
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=78.50 E-value=3.3 Score=20.20 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 69995889883589999999999808
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHK 71 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~ 71 (685)
+-|++--||||||.+..-|..|-..+
T Consensus 4 i~ivG~snSGKTTLi~kli~~l~~~G 29 (159)
T cd03116 4 IGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 99996799999999999999999779
No 484
>PRK07773 replicative DNA helicase; Validated
Probab=78.45 E-value=4.5 Score=19.24 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCCCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHH
Q ss_conf 9896699958-8988358999999999980899978867621147999999999998
Q gi|254780952|r 42 DDTPLLILAG-AGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLAC 97 (685)
Q Consensus 42 ~~~~~lV~Ag-aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~ 97 (685)
..|.+.|+|| ||.|||.-...-+.+.-...+.+ ++..+. ...+.++-.|+..
T Consensus 201 ~~~~l~i~a~rp~~GKt~~~~~~a~~~a~~~~~~---v~~FSL-EMs~~ql~~Rlls 253 (868)
T PRK07773 201 HPGQMIIVAARPGVGKSTLGLDFARSCSIRHRLA---SVIFSL-EMSKEEIVMRLLS 253 (868)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC---EEEEEE-CCCHHHHHHHHHH
T ss_conf 8776799982897777789999999999865996---589730-5678899999998
No 485
>KOG0390 consensus
Probab=78.31 E-value=4.6 Score=19.22 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHCCCHHHHHHHHC------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCH-----HHEEEEE
Q ss_conf 88876299889999853------------89896699958898835899999999998089997-----8867621
Q gi|254780952|r 24 PNYLKGLNAQQTHAVTI------------PDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPP-----SKILAMT 82 (685)
Q Consensus 24 ~~~l~~Ln~~Q~~av~~------------~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p-----~~Il~iT 82 (685)
|-.-+-|-|-|++.+.+ ..+| +.+.-.||+|||.-.+.-+--++... |- .+.|++.
T Consensus 233 P~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~G-CImAd~~GlGKTlq~IsflwtlLrq~--P~~~~~~~k~lVV~ 305 (776)
T KOG0390 233 PLLKKILRPHQREGFEFLYKNLAGLIRPKNSGG-CIMADEPGLGKTLQCISFIWTLLRQF--PQAKPLINKPLVVA 305 (776)
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHHHC--CCCCCCCCCCEEEC
T ss_conf 447641281578778997864113111588875-47207887640788899999999868--67554446607984
No 486
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=78.31 E-value=2 Score=21.74 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=0.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 96699958898835899999999
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~ 66 (685)
+.++|++.+|+||| +|+.|+.+
T Consensus 1 ~Ki~vvG~~~vGKT-sli~r~~~ 22 (161)
T cd01861 1 HKLVFLGDQSVGKT-SIITRFMY 22 (161)
T ss_pred CEEEEECCCCCCHH-HHHHHHHH
T ss_conf 97999997997899-99999931
No 487
>pfam08303 tRNA_lig_kinase tRNA ligase kinase domain. This domain is found in fungal tRNA ligases and has kinase activity. tRNA ligases are enzymes required for the splicing of precursor tRNA molecules containing introns.
Probab=78.26 E-value=1.1 Score=23.36 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=0.0
Q ss_pred EECCCCCHHHHHHH
Q ss_conf 95889883589999
Q gi|254780952|r 49 LAGAGTGKTTVLIA 62 (685)
Q Consensus 49 ~AgaGsGKT~~L~~ 62 (685)
+|.+|+|||++-..
T Consensus 5 IAtIGCGKTTv~~a 18 (169)
T pfam08303 5 IATIGCGKTTVSLT 18 (169)
T ss_pred CCCCCCCHHHHHHH
T ss_conf 12688559999999
No 488
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=78.24 E-value=2.7 Score=20.74 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=0.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEE-EEEEC
Q ss_conf 966999588988358999999999980899978867-62114
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKIL-AMTFT 84 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il-~iTFT 84 (685)
.++++++..|+|||+. +..|+.. .|..+. ++++|
T Consensus 3 r~iil~Gpsg~GK~tl----~~~l~~~---~~~~~~~~v~~T 37 (184)
T smart00072 3 RPIVLSGPSGVGKGTL----LAELIQE---IPDAFERVVSHT 37 (184)
T ss_pred CEEEEECCCCCCHHHH----HHHHHHH---CCCCEEEEEEEE
T ss_conf 7799999999999999----9999863---964505778767
No 489
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.21 E-value=2.2 Score=21.43 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=0.0
Q ss_pred EEECCCC-CHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9958898-835899999999998089997
Q gi|254780952|r 48 ILAGAGT-GKTTVLIARMLHLICHKEIPP 75 (685)
Q Consensus 48 V~AgaGs-GKT~~L~~ri~~Ll~~~~~~p 75 (685)
++|..|| |||||-.- +.++|...|.++
T Consensus 125 ~IaVTGTnGKTTTtsl-i~~iL~~~g~~~ 152 (476)
T PRK00141 125 WLAVTGTNGKTTTTAM-LAAMMQAGGFAA 152 (476)
T ss_pred EEEEECCCCHHHHHHH-HHHHHHHCCCCC
T ss_conf 3889689967989999-999998379972
No 490
>KOG0348 consensus
Probab=78.20 E-value=4.6 Score=19.19 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHCCCHHHHHHHHCCCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH-----EEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 7629988999985389896-69995889883589999999999808999788-----67621147999999999998516
Q gi|254780952|r 27 LKGLNAQQTHAVTIPDDTP-LLILAGAGTGKTTVLIARMLHLICHKEIPPSK-----ILAMTFTNQAIQEMKNRLACYLG 100 (685)
Q Consensus 27 l~~Ln~~Q~~av~~~~~~~-~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~-----Il~iTFT~~AA~el~~Ri~~~l~ 100 (685)
++.++.-|+++|-.-.+|. ++|.|--|||||-.-.--|+..|....-.-.+ -|+|.-||--|...-+-+.+++.
T Consensus 157 i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~ 236 (708)
T KOG0348 157 ISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLK 236 (708)
T ss_pred CCCCCHHHHCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHC
T ss_conf 57640676502035525863478857788621799999999997268655556883489980419999999999998725
Q ss_pred C
Q ss_conf 4
Q gi|254780952|r 101 E 101 (685)
Q Consensus 101 ~ 101 (685)
.
T Consensus 237 ~ 237 (708)
T KOG0348 237 P 237 (708)
T ss_pred C
T ss_conf 7
No 491
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=77.98 E-value=4.4 Score=19.35 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=0.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 99958898835899999999998089997886762114799999999999851645
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEK 102 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~ 102 (685)
++.+.+|||||.+-.+-+.+.+..+ ++++++.---.-+-.+..|+....|..
T Consensus 1 ll~G~tGsGkte~y~~~~~~~l~~g----~~~~~l~Pei~l~~q~~~~~~~~fg~~ 52 (524)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG----KSALVLVPEIALTPQTLQRFKGRFGSQ 52 (524)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 9545678861688899999997337----717897042110167899999971872
No 492
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.96 E-value=2.1 Score=21.57 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=0.0
Q ss_pred EEECCCC-CHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9958898-835899999999998089997
Q gi|254780952|r 48 ILAGAGT-GKTTVLIARMLHLICHKEIPP 75 (685)
Q Consensus 48 V~AgaGs-GKT~~L~~ri~~Ll~~~~~~p 75 (685)
++|..|| |||||-.- +.++|...|.++
T Consensus 124 ~IaVTGTnGKTTTtsl-i~~iL~~~g~~~ 151 (481)
T PRK01438 124 WLAVTGTNGKTTTVQM-LASILRAAGLRA 151 (481)
T ss_pred EEEEECCCCCHHHHHH-HHHHHHHCCCCE
T ss_conf 8999389974609999-999999669970
No 493
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.93 E-value=2.1 Score=21.51 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=0.0
Q ss_pred EEECCCC-CHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9958898-835899999999998089997
Q gi|254780952|r 48 ILAGAGT-GKTTVLIARMLHLICHKEIPP 75 (685)
Q Consensus 48 V~AgaGs-GKT~~L~~ri~~Ll~~~~~~p 75 (685)
|+|..|| |||||-.- +++++...|.++
T Consensus 112 ~IaVTGTnGKTTTtsl-i~~iL~~~g~~~ 139 (445)
T PRK04308 112 VIAITGSNGKTTVTSL-VGYLCIKCGLDT 139 (445)
T ss_pred EEEEECCCCCHHHHHH-HHHHHHHCCCCE
T ss_conf 7999489983779999-999999759962
No 494
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.71 E-value=3.6 Score=19.92 Aligned_cols=44 Identities=20% Similarity=0.500 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH--EEE----EEECHHHHHHHHHHH
Q ss_conf 69995889883589999999999808999788--676----211479999999999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSK--ILA----MTFTNQAIQEMKNRL 95 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~--Il~----iTFT~~AA~el~~Ri 95 (685)
+.+++.-||||||++ +++ .+-..|.+ |.+ +++.++...+++.++
T Consensus 31 vaiiG~nGsGKSTLl-----~~l-~Gll~P~~G~I~v~G~~i~~~~~~~~~~r~~v 80 (275)
T PRK13639 31 IAILGPNGAGKSTLF-----LHF-NGILKPSSGSVLIKGEPIKYDKKSLLNVRKTV 80 (275)
T ss_pred EEEECCCCCHHHHHH-----HHH-HCCCCCCCEEEEECCEECCCCCHHHHHHHHHC
T ss_conf 999999996499999-----999-73989996399999999988806599998741
No 495
>KOG1801 consensus
Probab=77.71 E-value=1.8 Score=21.91 Aligned_cols=50 Identities=38% Similarity=0.465 Sum_probs=0.0
Q ss_pred CEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHH---HHHHHHHHHHHHHEEEE
Q ss_conf 369996113455669836984685766842212996787899---99999998586411699
Q gi|254780952|r 570 CIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGE---RRLAYVGITRAKKKCHL 628 (685)
Q Consensus 570 ~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEE---rRL~YVA~TRAk~~L~l 628 (685)
.+.+.|+-+.+|+|=|+-++..+ ++.+++.+..+ ||+. ||+||||..|++
T Consensus 731 ~i~v~tvD~fqg~e~diii~s~v--------rs~~~g~igf~~~~~Rln-vALtra~~~l~v 783 (827)
T KOG1801 731 DLSVSTVDSFQGGERDIIIISTV--------RSIDEGSIGFECNLRRLN-VALTRARTCFWL 783 (827)
T ss_pred CEEEEECCCCCCCCCCEEEEECC--------EECCCCCEEEECCHHHHH-HHHCCCCCCEEE
T ss_conf 12444536543687663787323--------014777601431177888-860313121577
No 496
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=77.69 E-value=2.4 Score=21.17 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9896699958898835899999999
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~ 66 (685)
.+...+|+|++|+|||+.++.-|.+
T Consensus 161 rGQR~lIiGd~gtGKT~iaidtIin 185 (502)
T PRK09281 161 RGQRELIIGDRQTGKTAIAIDTIIN 185 (502)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8756675247873388999999985
No 497
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=77.68 E-value=3.7 Score=19.83 Aligned_cols=56 Identities=30% Similarity=0.302 Sum_probs=0.0
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCC------CCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 9958898835899999999998089------99788676211479999999999985164587896
Q gi|254780952|r 48 ILAGAGTGKTTVLIARMLHLICHKE------IPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQ 107 (685)
Q Consensus 48 V~AgaGsGKT~~L~~ri~~Ll~~~~------~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~ 107 (685)
|++.||+||.+.+-.-+.+++..+. ++|.+ .||--|---=|-|...+.....++|+
T Consensus 54 iTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS----~~sgGaiLGDr~Rm~~~~~~~~~fiR 115 (325)
T PRK09435 54 ITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS----TRTGGSILGDKTRMERLSRHPNAFIR 115 (325)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC----CCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 427999868899999999999679858999978999----98886101038888761479984884
No 498
>KOG0745 consensus
Probab=77.60 E-value=1.7 Score=22.09 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 683215888762998899998538989669995889883589999999999
Q gi|254780952|r 18 FVPSCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 18 ~~~~~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
.||-.--.....|.+.+.. |.... -++++++.-|||||. |+..+|+.|
T Consensus 203 ~~~~~~r~~~~~ld~~~~d-v~LeK-SNvLllGPtGsGKTl-laqTLAr~l 250 (564)
T KOG0745 203 QWPNNQRQIAKALDEDDED-VELEK-SNVLLLGPTGSGKTL-LAQTLARVL 250 (564)
T ss_pred CCCCCCCHHCCCCCCCCCC-EEEEC-CCEEEECCCCCCHHH-HHHHHHHHH
T ss_conf 3655421010355543454-15403-547997788876438-999999970
No 499
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=77.57 E-value=2.9 Score=20.51 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEHH
Q ss_conf 69995889883589999999999808999788676211479999999999985164587896178
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQTFH 110 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~T~H 110 (685)
+-|.|.-|+|||++. +++.++....++.|.-|=.=.|-+--..||++.+....... ..++-||
T Consensus 2 IaVtGsSGAGtsTv~-r~f~~IF~re~v~a~vIegD~fHryDR~emk~~~~~a~~~g-~~~Shfg 64 (277)
T cd02029 2 IAVTGSSGAGTTTVK-RAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAG-RNFSHFG 64 (277)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC-CCCCCCC
T ss_conf 899338888478799-99999872058852899678665467899999999998647-8766678
No 500
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=77.54 E-value=1.9 Score=21.90 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9896699958898835899999999
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLH 66 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~ 66 (685)
.+..+.|.|++|+|||+.+..-+..
T Consensus 68 ~GQr~~If~~~g~GKt~l~~~~i~~ 92 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIIN 92 (274)
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHH
T ss_conf 7867515588875578899999997
Done!