HHsearch alignment for GI: 254780952 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=97.56 E-value=0.00028 Score=48.15 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=52.0
Q ss_pred CHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 988999985389-89669995889883589999999999808999788676211479999999999985164587896
Q gi|254780952|r 31 NAQQTHAVTIPD-DTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQ 107 (685)
Q Consensus 31 n~~Q~~av~~~~-~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~~~i~ 107 (685)
T Consensus 1 ~~~Q~~~i~~~~~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~-~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~ 77 (167)
T pfam00270 1 TPIQAEAIPAILEGKDVLVQAPTGSGKTLAFLLPALQALLKNP-DGPQALVLAPTRELAEQIYEELKKLGKYLGLKVA 77 (167)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9459999999976997899889997589999999999987477-8987999906088888999886432102676404