HHsearch alignment for GI: 254780952 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=100.00 E-value=0 Score=790.55 Aligned_cols=478 Identities=40% Similarity=0.641 Sum_probs=432.4
Q ss_pred CCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC---CCEE
Q ss_conf 9988999985389896699958898835899999999998089997886762114799999999999851645---8789
Q gi|254780952|r 30 LNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEK---IPRI 106 (685)
Q Consensus 30 Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~---~~~i 106 (685)
T Consensus 1 Ln~~Q~~av~~-~~~~llV~AgAGSGKT~~L~~Ri~~li~~~~~~p~~IL~lTFT~kAA~Em~~Ri~~~l~~~~~~~~~i 79 (494)
T pfam00580 1 LNPEQRKAVTH-LGGPLLVLAGAGTGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAAREMKERILKLLGKAEASELNI 79 (494)
T ss_pred CCHHHHHHHCC-CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 99889999809-99997999718706899999999999981899974787670289999999999998738344688678
Q ss_pred EEHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCC-HHHHHHHHHHHHHCCCCHHHHHHCC
Q ss_conf 6178999999998499848-798980728999999999999973998--54789-8999999866754158964612114
Q gi|254780952|r 107 QTFHSFCASILRKHGEVVG-LPTDFAILDSAESRTIIKQLLKDLQID--DKDYD-PHEVIEKIDYWQNRGWNPKDIPQSS 182 (685)
Q Consensus 107 ~T~Hsf~~~il~~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~i~~~k~~~~~~~~~~~~~ 182 (685)
T Consensus 80 ~T~Hsf~~~iLr~~~~~~g~~~~~f~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~ 159 (494)
T pfam00580 80 STFHSFCLRILRKYANRIGDLLPNFSILDELDQLALLKEILKKDRLDLDSKLLRPLLELKELISKAKNELLSPEELQQAS 159 (494)
T ss_pred EHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 54999999999998998377777882166788999999999874136684433689999999999987599999997524
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf --653899999999975577775300111000124543012-06889740122102532107751134688787751111
Q gi|254780952|r 183 --LTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKE 259 (685)
Q Consensus 183 --~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~ 259 (685)
T Consensus 160 ~~~~~~~~~~~~~~~~y~~~~~~~~~~Df~Dll~~~~~lL~~~~~~~~~~~~r~~~ilVDEfQDtn~~Q~~il~~L~~~- 238 (494)
T pfam00580 160 YAATPRDKLAAEFYQEYQERLKENNALDFDDLLLLTLELLRSDPELLEAYRERFKYILVDEFQDTNPIQYELLKLLAGG- 238 (494)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCEEECHHHCCCHHHHHHHHHHHHCC-
T ss_conf 1357589999999999999999869989899999999997319999999986072654034302649999999998658-
Q ss_pred CCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHH-HHHHCCC
Q ss_conf 267887599995306886311332201345542057664067876126751467875202444343201012-2221023
Q gi|254780952|r 260 DSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKK-LFTQRDC 338 (685)
Q Consensus 260 ~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~-l~~~~~~ 338 (685)
T Consensus 239 ----~~~l~~VGD~~QSIY~FRGAd~~~~~~f~~~~~~~~~i~L~~NyRS~~~Il~~aN~l~~~~~~~~~~~~l~~~~~- 313 (494)
T pfam00580 239 ----HPNLFLVGDPDQSIYGFRGADIENILKFEKDFPAAKVITLEQNYRSTPEILNAANKLISNNTARKEKRLLWSQKG- 313 (494)
T ss_pred ----CCEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf ----983999817971442017999699999998666566725889989887899999999972602244543545578-
Q ss_pred CCCCCEEEEECCCCCHHCCCCCHHHHHHHHHC--CCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHH
Q ss_conf 55674488731553100000000136665311--36530311101001478899875202332032033-1000112102
Q gi|254780952|r 339 HDDAKVSIHVSQSDNSELSTIIQEIINIQNTG--MSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRD 415 (685)
Q Consensus 339 ~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g--~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~ 415 (685)
T Consensus 314 -~~~~v~~~~~~~~~~Ea~~ia~~I~~l~~~~~~~~~~DiAIL~R~~~~~~~l~~~L~~~gIP~~~~~~~~f~~~~ev~d 392 (494)
T pfam00580 314 -SGEKVTVYEAETEQEEAEFIADEIKALHKSGAAIPFGDIAVLVRSNSQSRAIEEALLKAGIPYKILGGLSFFDRKEIKD 392 (494)
T ss_pred -CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf -8996079837999999999999999998779998856568998252318999999997799989989842001899999
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89999988466302457530468754650246688887887739846899976410--4679977854334343335666
Q gi|254780952|r 416 ALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLID--SGQFRPQIRQSLQNFVKDIRRW 493 (685)
Q Consensus 416 lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~l~~~ 493 (685)
T Consensus 393 lla~Lr~i~np~d~~al~rvl~~P~~g~~~~~l~~l~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l~~f~~~~~~~ 472 (494)
T pfam00580 393 LLALLRLIDNPKDDLALLRILNTPKRGIGPTTLDKLRNLAKDRQISLFKALNQLLEKLNELLSARAYKKLLLFLALIEEL 472 (494)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999987698868999999814878989999999999998759999999999986301326989999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHCCC
Q ss_conf 5310246602223334777096
Q gi|254780952|r 494 NNCSKKMDPAPIANMILEQSGY 515 (685)
Q Consensus 494 ~~~~~~~~~~~l~~~i~~~~~~ 515 (685)
T Consensus 473 r~~~~~~~~~~l~~~i~~~tgy 494 (494)
T pfam00580 473 EKLLLEILLEALLDEVLELLGY 494 (494)
T ss_pred HHHHCCCCHHHHHHHHHHHHCC
T ss_conf 9976439999999999986194