HHsearch alignment for GI: 254780952 and conserved domain: pfam01443
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=90.98 E-value=0.1 Score=30.58 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=28.0
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHH
Q ss_conf 10253210775113468878775111126788759999530688631
Q gi|254780952|r 233 IPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYE 279 (685)
Q Consensus 233 ~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~ 279 (685)
T Consensus 60 ~~~~iiDE~~~~~~g~l~~~~~~~~------~~~~~l~GDp~Q~~~~ 100 (226)
T pfam01443 60 GKILILDEYTLLPPGYILLLAAISG------AKLVILFGDPLQIPYH 100 (226)
T ss_pred CCEEEECCCCCCCHHHHHHHHHCCC------CCEEEEECCCCCCCCC
T ss_conf 7889989645668168999876068------8679998287616477