HHsearch alignment for GI: 254780952 and conserved domain: pfam01443

>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=90.98  E-value=0.1  Score=30.58  Aligned_cols=41  Identities=24%  Similarity=0.302  Sum_probs=28.0

Q ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHH
Q ss_conf             10253210775113468878775111126788759999530688631
Q gi|254780952|r  233 IPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYE  279 (685)
Q Consensus       233 ~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~  279 (685)
T Consensus        60 ~~~~iiDE~~~~~~g~l~~~~~~~~------~~~~~l~GDp~Q~~~~  100 (226)
T pfam01443        60 GKILILDEYTLLPPGYILLLAAISG------AKLVILFGDPLQIPYH  100 (226)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHCCC------CCEEEEECCCCCCCCC
T ss_conf             7889989645668168999876068------8679998287616477