HHsearch alignment for GI: 254780952 and conserved domain: pfam04257
>pfam04257 Exonuc_V_gamma Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyses ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.
Probab=99.54 E-value=3.8e-12 Score=102.08 Aligned_cols=312 Identities=15% Similarity=0.205 Sum_probs=178.1
Q ss_pred CCCCCEEEEECCCCCHHCCCCCHHHHHHHHH--CCCCCHHHHEECC-CHHHHHHHHHHH----CCCCCEEEECCCCCC-C
Q ss_conf 5567448873155310000000013666531--1365303111010-014788998752----023320320331000-1
Q gi|254780952|r 339 HDDAKVSIHVSQSDNSELSTIIQEIINIQNT--GMSLNNIAILVRT-SWQTRKFEDAFL----EQEIPHKVIGGSFYD-R 410 (685)
Q Consensus 339 ~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~--g~~~~diAVL~Rt-n~~~~~l~~~L~----~~gIP~~~~g~~~f~-~ 410 (685)
T Consensus 331 ~~D~Si~ih~chs~~REvEvL~d~LL~~l~~dp~L~P~DIlVm~Pdie~YaP~I~aVF~~~~~~~~iP~~iaD~~~~~~~ 410 (1008)
T pfam04257 331 PADRSLQIHSCHSPLREVEVLHDQLLALLAADPTLQPRDILVMTPDIETYAPYIEAVFGRAPDGRRIPYSIADRSARQEN 410 (1008)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCC
T ss_conf 89980799858987999999999999998509999842278887976887999999948998888477588275512131
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHCCCCC----CCCCCHHHHHHHHHHHHHCCC--------------------CHHHHH
Q ss_conf 12102899999884663024575304687----546502466888878877398--------------------468999
Q gi|254780952|r 411 QEIRDALAYFRLVCQEHRDEDFKRIINCP----KRGIGKESLHKIQYHASQHHI--------------------SLLQAS 466 (685)
Q Consensus 411 ~eV~~lla~Lr~i~~p~d~~a~~~il~~p----~~gi~~~~l~~l~~~a~~~~~--------------------~~~~~~ 466 (685)
T Consensus 411 pl~~~~~~LL~L~~sRf~~~evl~lL~~p~v~~rf~l~~~dl~~i~~wl~~agirWGlD~~~r~~~~~~~~~~~TW~~gL 490 (1008)
T pfam04257 411 PLLSAFLQLLNLPESRFTASELLDLLEVPAVRRRFGLDEDDLERLRQWLEEAGIRWGLDAEHRQALGLPGDEQNSWRFGL 490 (1008)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCHHHHH
T ss_conf 89999999984444478899999997497989875999899999999999659555577777874279864446499999
Q ss_pred HHHHCC-------------------CCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHCCCHHHHHCCCCHH
Q ss_conf 764104-------------------67997785433434333566653102-4660222333477709667885068845
Q gi|254780952|r 467 EKLIDS-------------------GQFRPQIRQSLQNFVKDIRRWNNCSK-KMDPAPIANMILEQSGYMAMWKNNKSSE 526 (685)
Q Consensus 467 ~~~~~~-------------------~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 526 (685)
T Consensus 491 ~RllLG~a~~~~~~~~~~i~P~~~v~~~~~~~lg~l~~~~~~L~~~~~~l~~~~~~~~W~~~l~~ll--~~~f~~~~~~~ 568 (1008)
T pfam04257 491 DRLLLGYAMPDENGIWGGILPYDDVEGLDAELLGKLAEFLDRLDKWRDRLSQPRTLEEWLERLRQLL--DDFFDPDEDDE 568 (1008)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HHHHCCCCCHH
T ss_conf 9998671027776554771234776862599999999999999999999728989999999999999--99856892029
Q ss_pred H-HHHHHHHHHHHHHHHHHC--C---CHHHHHHHHH--HHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCC
Q ss_conf 5-898884399999998302--6---8899999757--654221115458936999611345566983698468576684
Q gi|254780952|r 527 K-SQERLDNLRELLSIIEKH--E---TLEGFVLQAP--LRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLP 598 (685)
Q Consensus 527 ~-~~~~l~~l~~l~~~~~~~--~---sl~~fl~~~~--~~~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P 598 (685)
T Consensus 569 ~~~~~l~~~l~~~~~~~~~a~~~~~i~l~~v~~~l~~~l~~~~~~~~fl~G~Itfc~l~PmRsIPfkvVclLGmndg~fP 648 (1008)
T pfam04257 569 WELQLLRKALADLLEDAIAAGFDQPIPLEVVRDLLEERLSQQSGRQGFLTGGVTFCTLMPMRSIPFKVVCLLGMNDGDFP 648 (1008)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 99999999999999999856898865699999999998733355667677855771677667898014899679988798
Q ss_pred CHHC-------------CCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 2212-------------996787899999999985864116998313211257654333555688872331478
Q gi|254780952|r 599 HQLS-------------INEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYD 659 (685)
Q Consensus 599 ~~~~-------------~~~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El~~ 659 (685)
T Consensus 649 R~~~~~~fDLm~~~pr~GDrsrr~dDRylFLEaLlSAr~~LyiSyvG~----s---~~dn~~~~PS~lV~ELld 715 (1008)
T pfam04257 649 RQDQPPGFDLMAKHPRLGDRSRRDDDRYLFLEALLSAREHLYISYVGR----S---IRDNSERPPSVLVSELLD 715 (1008)
T ss_pred CCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECC----C---CCCCCCCCCCHHHHHHHH
T ss_conf 888899973223388888986457799999999984422089999243----5---889893798789999999