HHsearch alignment for GI: 254780952 and conserved domain: pfam04257

>pfam04257 Exonuc_V_gamma Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyses ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.
Probab=99.54  E-value=3.8e-12  Score=102.08  Aligned_cols=312  Identities=15%  Similarity=0.205  Sum_probs=178.1

Q ss_pred             CCCCCEEEEECCCCCHHCCCCCHHHHHHHHH--CCCCCHHHHEECC-CHHHHHHHHHHH----CCCCCEEEECCCCCC-C
Q ss_conf             5567448873155310000000013666531--1365303111010-014788998752----023320320331000-1
Q gi|254780952|r  339 HDDAKVSIHVSQSDNSELSTIIQEIINIQNT--GMSLNNIAILVRT-SWQTRKFEDAFL----EQEIPHKVIGGSFYD-R  410 (685)
Q Consensus       339 ~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~--g~~~~diAVL~Rt-n~~~~~l~~~L~----~~gIP~~~~g~~~f~-~  410 (685)
T Consensus       331 ~~D~Si~ih~chs~~REvEvL~d~LL~~l~~dp~L~P~DIlVm~Pdie~YaP~I~aVF~~~~~~~~iP~~iaD~~~~~~~  410 (1008)
T pfam04257       331 PADRSLQIHSCHSPLREVEVLHDQLLALLAADPTLQPRDILVMTPDIETYAPYIEAVFGRAPDGRRIPYSIADRSARQEN  410 (1008)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCC
T ss_conf             89980799858987999999999999998509999842278887976887999999948998888477588275512131


Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHCCCCC----CCCCCHHHHHHHHHHHHHCCC--------------------CHHHHH
Q ss_conf             12102899999884663024575304687----546502466888878877398--------------------468999
Q gi|254780952|r  411 QEIRDALAYFRLVCQEHRDEDFKRIINCP----KRGIGKESLHKIQYHASQHHI--------------------SLLQAS  466 (685)
Q Consensus       411 ~eV~~lla~Lr~i~~p~d~~a~~~il~~p----~~gi~~~~l~~l~~~a~~~~~--------------------~~~~~~  466 (685)
T Consensus       411 pl~~~~~~LL~L~~sRf~~~evl~lL~~p~v~~rf~l~~~dl~~i~~wl~~agirWGlD~~~r~~~~~~~~~~~TW~~gL  490 (1008)
T pfam04257       411 PLLSAFLQLLNLPESRFTASELLDLLEVPAVRRRFGLDEDDLERLRQWLEEAGIRWGLDAEHRQALGLPGDEQNSWRFGL  490 (1008)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCHHHHH
T ss_conf             89999999984444478899999997497989875999899999999999659555577777874279864446499999


Q ss_pred             HHHHCC-------------------CCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHCCCHHHHHCCCCHH
Q ss_conf             764104-------------------67997785433434333566653102-4660222333477709667885068845
Q gi|254780952|r  467 EKLIDS-------------------GQFRPQIRQSLQNFVKDIRRWNNCSK-KMDPAPIANMILEQSGYMAMWKNNKSSE  526 (685)
Q Consensus       467 ~~~~~~-------------------~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~  526 (685)
T Consensus       491 ~RllLG~a~~~~~~~~~~i~P~~~v~~~~~~~lg~l~~~~~~L~~~~~~l~~~~~~~~W~~~l~~ll--~~~f~~~~~~~  568 (1008)
T pfam04257       491 DRLLLGYAMPDENGIWGGILPYDDVEGLDAELLGKLAEFLDRLDKWRDRLSQPRTLEEWLERLRQLL--DDFFDPDEDDE  568 (1008)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HHHHCCCCCHH
T ss_conf             9998671027776554771234776862599999999999999999999728989999999999999--99856892029


Q ss_pred             H-HHHHHHHHHHHHHHHHHC--C---CHHHHHHHHH--HHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCC
Q ss_conf             5-898884399999998302--6---8899999757--654221115458936999611345566983698468576684
Q gi|254780952|r  527 K-SQERLDNLRELLSIIEKH--E---TLEGFVLQAP--LRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLP  598 (685)
Q Consensus       527 ~-~~~~l~~l~~l~~~~~~~--~---sl~~fl~~~~--~~~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P  598 (685)
T Consensus       569 ~~~~~l~~~l~~~~~~~~~a~~~~~i~l~~v~~~l~~~l~~~~~~~~fl~G~Itfc~l~PmRsIPfkvVclLGmndg~fP  648 (1008)
T pfam04257       569 WELQLLRKALADLLEDAIAAGFDQPIPLEVVRDLLEERLSQQSGRQGFLTGGVTFCTLMPMRSIPFKVVCLLGMNDGDFP  648 (1008)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCC
T ss_conf             99999999999999999856898865699999999998733355667677855771677667898014899679988798


Q ss_pred             CHHC-------------CCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf             2212-------------996787899999999985864116998313211257654333555688872331478
Q gi|254780952|r  599 HQLS-------------INEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYD  659 (685)
Q Consensus       599 ~~~~-------------~~~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El~~  659 (685)
T Consensus       649 R~~~~~~fDLm~~~pr~GDrsrr~dDRylFLEaLlSAr~~LyiSyvG~----s---~~dn~~~~PS~lV~ELld  715 (1008)
T pfam04257       649 RQDQPPGFDLMAKHPRLGDRSRRDDDRYLFLEALLSAREHLYISYVGR----S---IRDNSERPPSVLVSELLD  715 (1008)
T ss_pred             CCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECC----C---CCCCCCCCCCHHHHHHHH
T ss_conf             888899973223388888986457799999999984422089999243----5---889893798789999999