HHsearch alignment for GI: 254780952 and conserved domain: pfam07652
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=94.78 E-value=0.11 Score=30.33 Aligned_cols=46 Identities=24% Similarity=0.251 Sum_probs=32.7
Q ss_pred EEEECCCCCHHHH-HHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHH
Q ss_conf 9995889883589-9999999998089997886762114799999999999
Q gi|254780952|r 47 LILAGAGTGKTTV-LIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLA 96 (685)
Q Consensus 47 lV~AgaGsGKT~~-L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~ 96 (685)
T Consensus 6 ~ld~HPGaGKTr~vLP~~v~~~i~~----~lRtlVLaPTRVV~~Em~eAL~ 52 (146)
T pfam07652 6 VLDLHPGAGKTRKVLPELVRECIDR----RLRTLVLAPTRVVLAEMEEALR 52 (146)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHC
T ss_conf 9853899997022489999999972----8618997727999999999975