RPSBLAST alignment for GI: 254780952 and conserved domain: TIGR01074
>gnl|CDD|130146 TIGR01074, rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. Length = 664
Score = 447 bits (1152), Expect = e-126
Identities = 233/647 (36%), Positives = 341/647 (52%), Gaps = 32/647 (4%)
Query: 29 GLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAI 88
LN QQ AV P L+LAGAG+GKT V+ ++ +LI + I A+TFTN+A
Sbjct: 1 KLNPQQQEAVEYVTG-PCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAA 59
Query: 89 QEMKNRLACYLGEKIPR---IQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQL 145
+EMK R+A LG+ R I TFH+ I+++ +G ++F++ D + ++K+L
Sbjct: 60 REMKERVAKTLGKGEARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQLALLKEL 119
Query: 146 LKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQSSLTEDAEIPKAIYIQYVAYLQKTK 205
+ L DDKD ++I I W+N P+ S+ E + Y Y A+L+
Sbjct: 120 TEGLIKDDKDL-LDKLISTISNWKNDLLTPEQALASARGEREQTFAHCYALYQAHLRAYN 178
Query: 206 SCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQG 264
+ DF LI+ +L + V ++ KI Y++VDEYQD NT QY L++LL
Sbjct: 179 ALDFDDLILLPTLLLQQNEEVRNRWQNKIRYLLVDEYQDTNTSQYELVKLLVGDR----- 233
Query: 265 ARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHN 324
AR VGD++Q IY WRGA+ +++ ++DF +IKLEQNYRST IL AN LI++N
Sbjct: 234 ARFTVVGDDDQSIYSWRGARPENLVLLKEDFPQLKVIKLEQNYRSTGRILKAANILIANN 293
Query: 325 KQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQ-NTGMSLNNIAILVRTS 383
F+KKLF++ K+ + ++ E I EII + + AIL R +
Sbjct: 294 PHVFEKKLFSELG--YGEKIKVIECNNEEHEAERIAGEIIAHKLVNKTQYKDYAILYRGN 351
Query: 384 WQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRG 442
Q+R E A ++ IP+K+ GG SF+ R EI+D L+Y RL+ D F RI+N PKR
Sbjct: 352 HQSRLLEKALMQNRIPYKLSGGTSFFSRPEIKDLLSYLRLLVNPDDDAAFLRIVNTPKRE 411
Query: 443 IGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDP 502
IG +L K+ A + + SL AS + + +SLQ F + +++ +P
Sbjct: 412 IGPATLEKLGELAMERNKSLFTASFDMGLLQTLSGRGYESLQRFTDWLVEIRRLAERSEP 471
Query: 503 APIANMILEQSGYMAMWKNNKSSEKSQE-RLDNLRELLSII---------EKHETLEGFV 552
++E Y S K+ E R+ N+ L S ++ TL V
Sbjct: 472 IEAVRSLIEDIDYENWLYETSPSPKAAEMRMKNVNTLFSWFKEMLEGDEEDEPMTLTQVV 531
Query: 553 LQAPLRENLGSFIPD--SNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEG 610
+ LR+ L + + +Q+MTLHA+KGLEF VFI G E+G+LPHQ SI E NVE
Sbjct: 532 TRLTLRDMLERGEDEEELDQVQLMTLHASKGLEFPYVFIVGMEEGILPHQSSIEEDNVEE 591
Query: 611 ERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLEL 657
ERRLAYVGITRA+K+ RR + E +P S+FL EL
Sbjct: 592 ERRLAYVGITRAQKELTFTLCKERRQYG----ELVRPEP-SRFLDEL 633