RPSBLAST alignment for GI: 254780952 and conserved domain: TIGR01074

>gnl|CDD|130146 TIGR01074, rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. Length = 664
 Score =  447 bits (1152), Expect = e-126
 Identities = 233/647 (36%), Positives = 341/647 (52%), Gaps = 32/647 (4%)

Query: 29  GLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAI 88
            LN QQ  AV      P L+LAGAG+GKT V+  ++ +LI +       I A+TFTN+A 
Sbjct: 1   KLNPQQQEAVEYVTG-PCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAA 59

Query: 89  QEMKNRLACYLGEKIPR---IQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQL 145
           +EMK R+A  LG+   R   I TFH+    I+++    +G  ++F++ D  +   ++K+L
Sbjct: 60  REMKERVAKTLGKGEARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQLALLKEL 119

Query: 146 LKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQSSLTEDAEIPKAIYIQYVAYLQKTK 205
            + L  DDKD    ++I  I  W+N    P+    S+  E  +     Y  Y A+L+   
Sbjct: 120 TEGLIKDDKDL-LDKLISTISNWKNDLLTPEQALASARGEREQTFAHCYALYQAHLRAYN 178

Query: 206 SCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQG 264
           + DF  LI+    +L  +  V  ++  KI Y++VDEYQD NT QY L++LL         
Sbjct: 179 ALDFDDLILLPTLLLQQNEEVRNRWQNKIRYLLVDEYQDTNTSQYELVKLLVGDR----- 233

Query: 265 ARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHN 324
           AR   VGD++Q IY WRGA+  +++  ++DF    +IKLEQNYRST  IL  AN LI++N
Sbjct: 234 ARFTVVGDDDQSIYSWRGARPENLVLLKEDFPQLKVIKLEQNYRSTGRILKAANILIANN 293

Query: 325 KQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQ-NTGMSLNNIAILVRTS 383
              F+KKLF++       K+ +    ++  E   I  EII  +        + AIL R +
Sbjct: 294 PHVFEKKLFSELG--YGEKIKVIECNNEEHEAERIAGEIIAHKLVNKTQYKDYAILYRGN 351

Query: 384 WQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRG 442
            Q+R  E A ++  IP+K+ GG SF+ R EI+D L+Y RL+     D  F RI+N PKR 
Sbjct: 352 HQSRLLEKALMQNRIPYKLSGGTSFFSRPEIKDLLSYLRLLVNPDDDAAFLRIVNTPKRE 411

Query: 443 IGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDP 502
           IG  +L K+   A + + SL  AS  +        +  +SLQ F   +      +++ +P
Sbjct: 412 IGPATLEKLGELAMERNKSLFTASFDMGLLQTLSGRGYESLQRFTDWLVEIRRLAERSEP 471

Query: 503 APIANMILEQSGYMAMWKNNKSSEKSQE-RLDNLRELLSII---------EKHETLEGFV 552
                 ++E   Y         S K+ E R+ N+  L S           ++  TL   V
Sbjct: 472 IEAVRSLIEDIDYENWLYETSPSPKAAEMRMKNVNTLFSWFKEMLEGDEEDEPMTLTQVV 531

Query: 553 LQAPLRENLGSFIPD--SNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEG 610
            +  LR+ L     +   + +Q+MTLHA+KGLEF  VFI G E+G+LPHQ SI E NVE 
Sbjct: 532 TRLTLRDMLERGEDEEELDQVQLMTLHASKGLEFPYVFIVGMEEGILPHQSSIEEDNVEE 591

Query: 611 ERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLEL 657
           ERRLAYVGITRA+K+        RR +     E  +P   S+FL EL
Sbjct: 592 ERRLAYVGITRAQKELTFTLCKERRQYG----ELVRPEP-SRFLDEL 633