RPSBLAST alignment for GI: 254780952 and conserved domain: pfam00580

>gnl|CDD|144246 pfam00580, UvrD-helicase, UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family. Length = 494

 Score =  392 bits (1008), Expect = e-109
 Identities = 195/505 (38%), Positives = 285/505 (56%), Gaps = 30/505 (5%)

Query: 30  LNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQ 89
           LN +Q  AVT     PLL+LAGAGTGKT VL  R+ +LI    I P +ILA+TFTN+A +
Sbjct: 1   LNPEQRKAVT-HLGGPLLVLAGAGTGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAAR 59

Query: 90  EMKNRLACYLGEKIPR---IQTFHSFCASILRKHGEVVG-LPTDFAILDSAESRTIIKQL 145
           EMK R+   LG+       I TFHSFC  ILRK+   +G L  +F+ILD  +   ++K++
Sbjct: 60  EMKERILKLLGKAEASELNISTFHSFCLRILRKYANRIGDLLPNFSILDELDQLALLKEI 119

Query: 146 LKDLQIDDKDYDPH------EVIEKIDYWQNRGWNPKDIPQSSLTEDAEIPKA--IYIQY 197
           LK    D  D D        E+ E I   +N   +P+++ Q+S         A   Y +Y
Sbjct: 120 LKK---DRLDLDSKLLRPLLELKELISKAKNELLSPEELQQASYAATPRDKLAAEFYQEY 176

Query: 198 VAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLC 256
              L++  + DF  L++ T+E+L   P +L+ Y E+  YI+VDE+QD N  QY LL+LL 
Sbjct: 177 QERLKENNALDFDDLLLLTLELLRSDPELLEAYRERFKYILVDEFQDTNPIQYELLKLLA 236

Query: 257 QKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNT 316
                     +  VGD +Q IY +RGA   +IL F+KDF  A +I LEQNYRST  ILN 
Sbjct: 237 -----GGHPNLFLVGDPDQSIYGFRGADIENILKFEKDFPAAKVITLEQNYRSTPEILNA 291

Query: 317 ANKLISHNKQRFDK-KLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQNTG--MSL 373
           ANKLIS+N  R +K  L++Q+      KV+++ ++++  E   I  EI  +  +G  +  
Sbjct: 292 ANKLISNNTARKEKRLLWSQKG--SGEKVTVYEAETEQEEAEFIADEIKALHKSGAAIPF 349

Query: 374 NNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAYFRLVCQEHRDEDF 432
            +IA+LVR++ Q+R  E+A L+  IP+K++GG SF+DR+EI+D LA  RL+     D   
Sbjct: 350 GDIAVLVRSNSQSRAIEEALLKAGIPYKILGGLSFFDRKEIKDLLALLRLIDNPKDDLAL 409

Query: 433 KRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIR--QSLQNFVKDI 490
            RI+N PKRGIG  +L K++  A    ISL +A  +L++        R  + L  F+  I
Sbjct: 410 LRILNTPKRGIGPTTLDKLRNLAKDRQISLFKALNQLLEKLNELLSARAYKKLLLFLALI 469

Query: 491 RRWNNCSKKMDPAPIANMILEQSGY 515
                   ++    + + +LE  GY
Sbjct: 470 EELEKLLLEILLEALLDEVLELLGY 494