RPSBLAST alignment for GI: 254780952 and conserved domain: TIGR00609

>gnl|CDD|161956 TIGR00609, recB, exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1087
 Score = 96.0 bits (239), Expect = 3e-20
 Identities = 152/822 (18%), Positives = 261/822 (31%), Gaps = 226/822 (27%)

Query: 38  VTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPP---SKILAMTFTNQAIQEMKNR 94
           +TIP +   LI A AGTGKT  +    L L+   E  P    +IL +TFTN A +E+K R
Sbjct: 4   LTIPLNGTFLIEASAGTGKTFTIAQLYLRLL--LEGGPLTVEEILVVTFTNAATEELKTR 61

Query: 95  L---------AC----------------YLGEKIPR----------------IQTFHSFC 113
           +         A                    EK+ +                I T H FC
Sbjct: 62  IRGRIHQALRALKAALTSQELPEPLKEAIQDEKVKQAITRLRNALATMDEAAIYTIHGFC 121

Query: 114 ASILRKHGEVVGLP-TDFAILDSAESRTII------------------------------ 142
             +L +H            I D +     I                              
Sbjct: 122 QRMLEQHAFESDEIFDVELIEDESLLLAEITKDFWRRNFYNLPFDIAQIVLKTKKSPQAV 181

Query: 143 -KQLLKDLQIDDKDYDPHEVI--EKIDYWQNRGWNPKDIPQSSLTEDAE----------- 188
             Q+L DL +      P   +  E++  W  + +   D    ++ E+ +           
Sbjct: 182 LTQILADLLLQSYLAFPSPPLDLEQLIKWHEQIYKDLDKLDHAVFEEIDKLNAERNNLFC 241

Query: 189 IPKAIYIQYVAYLQKT--------KSCDFGGLII---KTIEVLHHPHVLKKYHEKIPYIM 237
           +   +++  +  +Q+         +   F  L+      ++      + +   E+ P  +
Sbjct: 242 LKDRVFLTLLKEVQEELKKEKKRRREIGFDDLLSRLETALKSAEGEKLAQAIREQYPIAL 301

Query: 238 VDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKD 297
           +DE+QD +  QY +   L   + +   +    +GD  Q IY +RGA     L  +    D
Sbjct: 302 IDEFQDTDPQQYRIFSKLFIAQKT--TSLFL-IGDPKQAIYSFRGADIFTYLQAKSKA-D 357

Query: 298 ANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSEL- 356
           A    L  N+RST  ++ + NKL S     F   L           V  H   S  S + 
Sbjct: 358 ARYT-LGTNWRSTPALVGSLNKLFSLISNPF---LEK----PIFIPVLAHQKNSKGSFVI 409

Query: 357 STIIQEIINIQNTGMSLNNIAILVRTSWQT----------------RKFEDAFLEQEIPH 400
           +   Q  I+   T +    +    +T  Q                   F   F  + +  
Sbjct: 410 NGQEQPPIHFFTTEVESEGVDDYRQTIAQKCAREIALWLASAALGLANFIATFGGRPLRA 469

Query: 401 KVIGGSFYDRQE---IRDALAYFRLV---CQE----HRDEDFKRIINCPKRGIGKESLHK 450
             I      R+E   IR AL   ++      +       E+ + ++   +  +  E+   
Sbjct: 470 GDIAVLVRGRKEANQIRKALKKAQIPSVYLSDKSSVFATEEAQELLALLEALLEPENEGT 529

Query: 451 IQYHASQH--HISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDPAPIANM 508
           ++   +     +S L+      D          + +  V+  R +++             
Sbjct: 530 LRAALASSIFGLSALELETLNQDE--------ITWERVVEKFREYHD------------- 568

Query: 509 ILEQSGYMAM------WKNNK----SSEKSQERLDNLRELLSIIEKHETLEGFVLQAPLR 558
           I  + G +AM       K       S    +  L NL  L  ++   E       +  L 
Sbjct: 569 IWRKIGVLAMFQRLMLEKGIGERLLSQPGGERILTNLLHLAELL--QEAAHQERNKLSLL 626

Query: 559 ENLGSFI--------------PDSNCIQIMTLHAAKGLEFDTVFI--------------- 589
             L   I               D+  ++I+T+H +KGLE+  VF+               
Sbjct: 627 RWLEDQISNEEEEEEEIIRLESDAELVKIVTIHKSKGLEYPIVFLPFITDAKKSNFASLH 686

Query: 590 ---SGWEQGLLPHQLSINEGNVEGER-----RLAYVGITRAKKKCHLF--YTINRRTHDF 639
              S   Q    +Q   N+     ER     RL YV +TRAKK+  +     I  +  + 
Sbjct: 687 DQHSHEYQLYDFNQSEENQKLARVERLAEDLRLLYVALTRAKKQLFIGIAPLITSKLSNL 746

Query: 640 TRVERYQPSQVSQFLLELYDPSHTQEIIYDDIYGTFSEHWNQ 681
                +  +   Q            E   D+I G   +    
Sbjct: 747 AYSALHNSALGYQ--------KQDGET--DNITG-LKQCLAA 777