RPSBLAST alignment for GI: 254780952 and conserved domain: TIGR02785
>gnl|CDD|163019 TIGR02785, addA_Gpos, recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. Length = 1232
Score = 86.7 bits (215), Expect = 2e-17
Identities = 108/548 (19%), Positives = 199/548 (36%), Gaps = 137/548 (25%)
Query: 225 VLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQ 284
+ Y EK ++VDEYQD N Q +L+LL K + + VGD Q IY +R A
Sbjct: 381 AAEFYREKFKEVLVDEYQDTNLLQESILQLL--KRGEEDEGNLFMVGDVKQSIYRFRQAD 438
Query: 285 FSHILNFQKDFKDAN-----IIKLEQNYRSTTHILNTANKLISH---------------- 323
S L F I L +N+RS +L+T N L
Sbjct: 439 PSLFLEKYHRFAQEGNEHGKRIDLAENFRSRKEVLDTTNYLFKQLMDEEVGEIDYDEEAQ 498
Query: 324 ----NKQ----RFDKKLFTQRDCHDDAKVSIHVSQSDNSELST--------------IIQ 361
N + +K + + + L +I+
Sbjct: 499 LKFGNAKYPENPDNKTELLLYEKLAIEEEEEEEIDEEEEILDKAQQEATMVAERIKALIK 558
Query: 362 EIINI------QNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGGSFY-DRQEIR 414
E + + ++ +I IL R+ + + F + IP V Y E+R
Sbjct: 559 EGFKVYDKKTGEYRPVTYRDIVILTRSRGWNLQIMEEFKKYGIPVFVNDAENYFQTTEVR 618
Query: 415 DALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQ 474
L+ R++ ++D ++ P G +E L I+ S +A + + + +
Sbjct: 619 VMLSLLRVIDNPYQDIPLVAVLRSPIVGFDEEELALIRLQ--NKDSSFYEAVKSYVKAQK 676
Query: 475 FR-PQIRQSLQNFVKDIRRWNNCSKKMDPAPIANMI---LEQSGYM-------------- 516
++ + L+NF+ +++W ++ I+ +I +GY
Sbjct: 677 LIEDELYEKLKNFLDSLQKWREFARTH---SISELIWKIYNDTGYYDYVGGLPNGKQRQA 733
Query: 517 ---AMWKNNKSSEKSQERLDNLRELLSIIEKHETLEGFVLQAPLRE---NLGSFI---PD 567
A+++ + EK+ + L + + IE+ ++E +L S +
Sbjct: 734 NLYALYERARQYEKTSFK--GLFQFIRFIER------------MQERQKDLASAVAVGEA 779
Query: 568 SNCIQIMTLHAAKGLEFDTVFISGWEQG----------LLPHQLSINEGNVEGERRLA-- 615
N +++MT+H +KGLEF VF+ G + LL QL + ++ + RL+
Sbjct: 780 ENAVRLMTIHKSKGLEFPVVFVLGMGKQFNKQDLNSSYLLNRQLGLGITYIDPQERLSYP 839
Query: 616 -----------------------YVGITRAKKKCHLFYTINRRTHDFTRVERYQPS-QVS 651
YV +TRAK+K L ++ +++ + VS
Sbjct: 840 SLPKVAIKQKMKRELLSEEMRVLYVALTRAKEKLILVGSVKDEK---KESKKWLAALAVS 896
Query: 652 QFLLELYD 659
++L D
Sbjct: 897 GWVLPAND 904