HHsearch alignment for GI: 254780953 and conserved domain: COG2885
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=4.7e-37 Score=226.68 Aligned_cols=176 Identities=30% Similarity=0.421 Sum_probs=128.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHH
Q ss_conf 9999999975147887654444455554311110012337888999999720178358860875899852211128-813
Q gi|254780953|r 8 SMFIMTTISGCGLASREKKKVFLHKSNDTDIVNKRFGSSLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEV 86 (190)
Q Consensus 8 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a 86 (190)
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~~ds~ 92 (190)
T COG2885 14 AALPGAALGACASKLNGDSA-ALIGAGPGALGGAGAGVPLDVAEAELRAKEAGDGPAERRKARDIILNLPNDVLFDFDSS 92 (190)
T ss_pred HHHHHHHHHCCHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHCCCCCEEEECCCCH
T ss_conf 10045542110100125653-22465544343345676655220012211003563212233320001454068358834
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 10999999999999999858994899998037787200111225899999999888523874516999970345888997
Q gi|254780953|r 87 FLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTN 166 (190)
Q Consensus 87 ~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n 166 (190)
T Consensus 93 ~l~p~~~~~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv~~~~-i~~~G~G~~~Pia~n 171 (190)
T COG2885 93 VLKPKAQATLDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQGVVADR-ISTVGYGEEKPIASN 171 (190)
T ss_pred HHCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCCCCCCC
T ss_conf 4398999999999999987899779997557887986787688899999999999984997011-789861645777889
Q ss_pred CCHHHHHCCCCEEEEEECC
Q ss_conf 6977985299169999301
Q gi|254780953|r 167 DTKVGRQNNQRIEIQIFPR 185 (190)
Q Consensus 167 ~~~~~ra~NRRVei~i~~~ 185 (190)
T Consensus 172 ~t~~gra~NRRVei~i~~~ 190 (190)
T COG2885 172 ATEEGRAKNRRVEIKISPK 190 (190)
T ss_pred CCCHHCCCCCCEEEEEECC
T ss_conf 7800103467478986278