HHsearch alignment for GI: 254780953 and conserved domain: PRK06925

>PRK06925 flagellar motor protein MotS; Reviewed.
Probab=100.00  E-value=2.2e-34  Score=211.72  Aligned_cols=132  Identities=26%  Similarity=0.332  Sum_probs=115.1

Q ss_pred             HHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC----HHHH
Q ss_conf             99999720178358860875899852211128-813109999999999999998589948999980377872----0011
Q gi|254780953|r   52 DEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGT----LKNN  126 (190)
Q Consensus        52 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~----~~~N  126 (190)
T Consensus        92 ~~l~~~~l~~~v~v~~~~~gv~i~l~~~~lF~~Gsa~l~~~~~~~L~~ia~~l~~~~~-~I~V~GHTD~~p~~~~~~~sN  170 (230)
T PRK06925         92 TYIEENELSSQITAKRDERGVVLVLQEAVLFDTGEADVLKNAEPLLHKIAVLLKTIPN-DIQVEGHTDSRPISTYRYPSN  170 (230)
T ss_pred             HHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCCH
T ss_conf             9998630246637887698689996898787889653487799999999999973996-389987448765555678853


Q ss_pred             HHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECC
Q ss_conf             122589999999988852-38745169999703458889976977985299169999301
Q gi|254780953|r  127 LLISQERADVIKSYLIQR-GVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPR  185 (190)
Q Consensus       127 ~~LS~~RA~~V~~~L~~~-g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~  185 (190)
T Consensus       171 WeLS~aRA~~V~~~li~~~gi~~~r-l~~~Gygd~~P~~~n~t~e~ra~NRRVeI~i~~e  229 (230)
T PRK06925        171 WELSAARASSVIRYFTSKEKLDSSR-FIAVGYADTKPVKDNKTEEHMKENRRVEIVIKKQ  229 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHH-EEEEEECCCCCCCCCCCCCHHHCCCCEEEEEECC
T ss_conf             8999999999999999835998467-8998765787489995832032188679998458