HHsearch alignment for GI: 254780953 and conserved domain: PRK06925
>PRK06925 flagellar motor protein MotS; Reviewed.
Probab=100.00 E-value=2.2e-34 Score=211.72 Aligned_cols=132 Identities=26% Similarity=0.332 Sum_probs=115.1
Q ss_pred HHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC----HHHH
Q ss_conf 99999720178358860875899852211128-813109999999999999998589948999980377872----0011
Q gi|254780953|r 52 DEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGT----LKNN 126 (190)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~----~~~N 126 (190)
T Consensus 92 ~~l~~~~l~~~v~v~~~~~gv~i~l~~~~lF~~Gsa~l~~~~~~~L~~ia~~l~~~~~-~I~V~GHTD~~p~~~~~~~sN 170 (230)
T PRK06925 92 TYIEENELSSQITAKRDERGVVLVLQEAVLFDTGEADVLKNAEPLLHKIAVLLKTIPN-DIQVEGHTDSRPISTYRYPSN 170 (230)
T ss_pred HHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCCH
T ss_conf 9998630246637887698689996898787889653487799999999999973996-389987448765555678853
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECC
Q ss_conf 122589999999988852-38745169999703458889976977985299169999301
Q gi|254780953|r 127 LLISQERADVIKSYLIQR-GVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPR 185 (190)
Q Consensus 127 ~~LS~~RA~~V~~~L~~~-g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~ 185 (190)
T Consensus 171 WeLS~aRA~~V~~~li~~~gi~~~r-l~~~Gygd~~P~~~n~t~e~ra~NRRVeI~i~~e 229 (230)
T PRK06925 171 WELSAARASSVIRYFTSKEKLDSSR-FIAVGYADTKPVKDNKTEEHMKENRRVEIVIKKQ 229 (230)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHH-EEEEEECCCCCCCCCCCCCHHHCCCCEEEEEECC
T ss_conf 8999999999999999835998467-8998765787489995832032188679998458