HHsearch alignment for GI: 254780953 and conserved domain: PRK07734
>PRK07734 motB flagellar motor protein MotB; Reviewed.
Probab=100.00 E-value=1.7e-34 Score=212.38 Aligned_cols=130 Identities=23% Similarity=0.314 Sum_probs=115.6
Q ss_pred CCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC----CHHHHHHHHHHH
Q ss_conf 0178358860875899852211128-81310999999999999999858994899998037787----200111225899
Q gi|254780953|r 59 QDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIG----TLKNNLLISQER 133 (190)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g----~~~~N~~LS~~R 133 (190)
T Consensus 123 l~~~v~v~~~~~Gl~I~l~~~~lF~~GsA~l~~~~~~lL~~ia~~l~~~~~~~I~V~GHTD~~Pi~~~~~~sNWeLSaaR 202 (259)
T PRK07734 123 LSSSLQTKLTEEGLLVTILDNILFDSGKADVRLEDLPLAKEMSNLLVSNPPRNITISGHTDNVPIANAQFASNWELSVMR 202 (259)
T ss_pred CCCCEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 03653799748837999537766688987569779999999999998579963899985577666677676448999999
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHH
Q ss_conf 9999998885238745169999703458889976977985299169999301011
Q gi|254780953|r 134 ADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNI 188 (190)
Q Consensus 134 A~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~ 188 (190)
T Consensus 203 A~sV~~~L~~~~gi~~~rl~v~G~gd~~Pi~~n~t~egra~NRRVeI~il~~~~~ 257 (259)
T PRK07734 203 AVNFMQVLLENKELDPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLILPLTEK 257 (259)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEECCCCC
T ss_conf 9999999998169995679999855787489996920142178679999576302