HHsearch alignment for GI: 254780953 and conserved domain: PRK08457
>PRK08457 motB flagellar motor protein MotB; Reviewed.
Probab=100.00 E-value=4.6e-33 Score=204.37 Aligned_cols=126 Identities=25% Similarity=0.368 Sum_probs=108.3
Q ss_pred CCCCEEEEECCEEEEEECCCEECC-CHHHCC-HHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCC----HHHHHHHHHH
Q ss_conf 178358860875899852211128-813109-9999999999999985899-48999980377872----0011122589
Q gi|254780953|r 60 DTGIVVSRIGDMITCYIPVHVSFV-SEVFLE-KKFLPMLQLIATILNKFPS-TVIAIQSHTDSIGT----LKNNLLISQE 132 (190)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~-~~~~~~L~~ia~~l~~~~~-~~i~I~GHTD~~g~----~~~N~~LS~~ 132 (190)
T Consensus 101 ~~~~~i~~~~~gi~i~l~~~~lF~~GsA~l~~~~~~~~L~~ia~il~~lp~~~~I~V~GHTD~~Pi~~~~f~SNWELSaa 180 (251)
T PRK08457 101 REGAALDQSDNGVALKLPSNLLFENGSAEIINQDMMLYLKRIAKIIQKLPKRVKIEVRGYTDNSPLNKTRYKSSYELAAN 180 (251)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 53024540367269980687545798801168039999999999998489974599871589997777888873999999
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHHC
Q ss_conf 999999988852387451699997034588899769779852991699993010113
Q gi|254780953|r 133 RADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNIK 189 (190)
Q Consensus 133 RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~k 189 (190)
T Consensus 181 RA~~V~r~Li~~Gi~p~R-l~a~Gygd~~Pi~~N---e~ra~NRRVeI~i~~~~~d~ 233 (251)
T PRK08457 181 RAYNVMKVLIQYGINPNR-LSFSSYGSNNPIAPN---ENRLKNNRVEIFFKVDANDT 233 (251)
T ss_pred HHHHHHHHHHHCCCCHHH-EEEEEECCCCCCCCC---CCHHHCCCEEEEEECCCCCC
T ss_conf 999999999985998789-789853278879899---76556395799994288755