HHsearch alignment for GI: 254780953 and conserved domain: PRK08457

>PRK08457 motB flagellar motor protein MotB; Reviewed.
Probab=100.00  E-value=4.6e-33  Score=204.37  Aligned_cols=126  Identities=25%  Similarity=0.368  Sum_probs=108.3

Q ss_pred             CCCCEEEEECCEEEEEECCCEECC-CHHHCC-HHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCC----HHHHHHHHHH
Q ss_conf             178358860875899852211128-813109-9999999999999985899-48999980377872----0011122589
Q gi|254780953|r   60 DTGIVVSRIGDMITCYIPVHVSFV-SEVFLE-KKFLPMLQLIATILNKFPS-TVIAIQSHTDSIGT----LKNNLLISQE  132 (190)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~-~~~~~~L~~ia~~l~~~~~-~~i~I~GHTD~~g~----~~~N~~LS~~  132 (190)
T Consensus       101 ~~~~~i~~~~~gi~i~l~~~~lF~~GsA~l~~~~~~~~L~~ia~il~~lp~~~~I~V~GHTD~~Pi~~~~f~SNWELSaa  180 (251)
T PRK08457        101 REGAALDQSDNGVALKLPSNLLFENGSAEIINQDMMLYLKRIAKIIQKLPKRVKIEVRGYTDNSPLNKTRYKSSYELAAN  180 (251)
T ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf             53024540367269980687545798801168039999999999998489974599871589997777888873999999


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHHC
Q ss_conf             999999988852387451699997034588899769779852991699993010113
Q gi|254780953|r  133 RADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNIK  189 (190)
Q Consensus       133 RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~k  189 (190)
T Consensus       181 RA~~V~r~Li~~Gi~p~R-l~a~Gygd~~Pi~~N---e~ra~NRRVeI~i~~~~~d~  233 (251)
T PRK08457        181 RAYNVMKVLIQYGINPNR-LSFSSYGSNNPIAPN---ENRLKNNRVEIFFKVDANDT  233 (251)
T ss_pred             HHHHHHHHHHHCCCCHHH-EEEEEECCCCCCCCC---CCHHHCCCEEEEEECCCCCC
T ss_conf             999999999985998789-789853278879899---76556395799994288755