HHsearch alignment for GI: 254780953 and conserved domain: PRK09038
>PRK09038 flagellar motor protein MotD; Reviewed.
Probab=100.00 E-value=1.5e-36 Score=223.94 Aligned_cols=134 Identities=24% Similarity=0.405 Sum_probs=120.2
Q ss_pred HHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC----CHHHHHH
Q ss_conf 999720178358860875899852211128-81310999999999999999858994899998037787----2001112
Q gi|254780953|r 54 FQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIG----TLKNNLL 128 (190)
Q Consensus 54 l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g----~~~~N~~ 128 (190)
T Consensus 113 l~~~~~~~~v~v~~~~~gl~I~l~~~~lF~~GSA~L~~~~~~lL~~ia~~L~~~~n-~I~I~GHTD~~Pi~~~~~~sNWe 191 (285)
T PRK09038 113 LGPLIDSGQVTVRRNELWIEIEINSSLLFGSGDALLSDEAFAILEKVAEVLKPFPN-PIHVEGFTDNVPIATAQFPSNWE 191 (285)
T ss_pred HHHHHHCCCEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCHHH
T ss_conf 98641158359997399799995688686888432498799999999999984387-28999857887655566786489
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHHC
Q ss_conf 2589999999988852387451699997034588899769779852991699993010113
Q gi|254780953|r 129 ISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNIK 189 (190)
Q Consensus 129 LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~k 189 (190)
T Consensus 192 LSaaRA~aV~r~L~~~Gi~p~R-l~~~Gygd~~P~~~N~t~egRa~NRRVeIvILr~~~~~ 251 (285)
T PRK09038 192 LSAARAASVVRLLADDGVAPSR-LAAVGYGEFQPVADNDTAEGRARNRRVVLVILRNLDVR 251 (285)
T ss_pred HHHHHHHHHHHHHHHCCCCHHH-EEEEEECCCCCCCCCCCCHHHHHCCCEEEEEECCHHHH
T ss_conf 9999999999999975999678-79987657876899948002530787699996786764