HHsearch alignment for GI: 254780953 and conserved domain: PRK09038

>PRK09038 flagellar motor protein MotD; Reviewed.
Probab=100.00  E-value=1.5e-36  Score=223.94  Aligned_cols=134  Identities=24%  Similarity=0.405  Sum_probs=120.2

Q ss_pred             HHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC----CHHHHHH
Q ss_conf             999720178358860875899852211128-81310999999999999999858994899998037787----2001112
Q gi|254780953|r   54 FQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIG----TLKNNLL  128 (190)
Q Consensus        54 l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g----~~~~N~~  128 (190)
T Consensus       113 l~~~~~~~~v~v~~~~~gl~I~l~~~~lF~~GSA~L~~~~~~lL~~ia~~L~~~~n-~I~I~GHTD~~Pi~~~~~~sNWe  191 (285)
T PRK09038        113 LGPLIDSGQVTVRRNELWIEIEINSSLLFGSGDALLSDEAFAILEKVAEVLKPFPN-PIHVEGFTDNVPIATAQFPSNWE  191 (285)
T ss_pred             HHHHHHCCCEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCHHH
T ss_conf             98641158359997399799995688686888432498799999999999984387-28999857887655566786489


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHHC
Q ss_conf             2589999999988852387451699997034588899769779852991699993010113
Q gi|254780953|r  129 ISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNIK  189 (190)
Q Consensus       129 LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~k  189 (190)
T Consensus       192 LSaaRA~aV~r~L~~~Gi~p~R-l~~~Gygd~~P~~~N~t~egRa~NRRVeIvILr~~~~~  251 (285)
T PRK09038        192 LSAARAASVVRLLADDGVAPSR-LAAVGYGEFQPVADNDTAEGRARNRRVVLVILRNLDVR  251 (285)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHH-EEEEEECCCCCCCCCCCCHHHHHCCCEEEEEECCHHHH
T ss_conf             9999999999999975999678-79987657876899948002530787699996786764