HHsearch alignment for GI: 254780953 and conserved domain: PRK12799
>PRK12799 motB flagellar motor protein MotB; Reviewed.
Probab=99.91 E-value=4.6e-23 Score=148.51 Aligned_cols=124 Identities=21% Similarity=0.348 Sum_probs=106.6
Q ss_pred CCCEEEEECCEEEEEECCC---EECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCH----H-HHHHHHH
Q ss_conf 7835886087589985221---1128-8131099999999999999985899489999803778720----0-1112258
Q gi|254780953|r 61 TGIVVSRIGDMITCYIPVH---VSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTL----K-NNLLISQ 131 (190)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~---~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~----~-~N~~LS~ 131 (190)
T Consensus 136 ~qLlIdiTpEGLRIQIvD~qnRPMF~~GSA~l~Py~rdIL~aIApvLn~vPN-kIsISGHTDA~PYa~G~~gYSNWELSA 214 (424)
T PRK12799 136 PHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPN-KLSLSGHTDDLPYARGERGYSNWELSA 214 (424)
T ss_pred CCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCCCHHHH
T ss_conf 1746997089358999857999760127775788999999999999865898-348863168855568998876562236
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH
Q ss_conf 99999999888523874516999970345888997697798529916999930101
Q gi|254780953|r 132 ERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190)
Q Consensus 132 ~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190)
T Consensus 215 DRANAARReLvaGGm~e~KvlRVvGmAst~~ld~~~p~~--PvNRRISIiVLnK~~ 268 (424)
T PRK12799 215 DRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASDD--PVNRRISILVLNKQS 268 (424)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCC--CCCCEEEEEEECHHH
T ss_conf 668799999997689811367898512134146679998--543657899966688