HHsearch alignment for GI: 254780953 and conserved domain: PRK12799

>PRK12799 motB flagellar motor protein MotB; Reviewed.
Probab=99.91  E-value=4.6e-23  Score=148.51  Aligned_cols=124  Identities=21%  Similarity=0.348  Sum_probs=106.6

Q ss_pred             CCCEEEEECCEEEEEECCC---EECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCH----H-HHHHHHH
Q ss_conf             7835886087589985221---1128-8131099999999999999985899489999803778720----0-1112258
Q gi|254780953|r   61 TGIVVSRIGDMITCYIPVH---VSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTL----K-NNLLISQ  131 (190)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~---~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~----~-~N~~LS~  131 (190)
T Consensus       136 ~qLlIdiTpEGLRIQIvD~qnRPMF~~GSA~l~Py~rdIL~aIApvLn~vPN-kIsISGHTDA~PYa~G~~gYSNWELSA  214 (424)
T PRK12799        136 PHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPN-KLSLSGHTDDLPYARGERGYSNWELSA  214 (424)
T ss_pred             CCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCCCHHHH
T ss_conf             1746997089358999857999760127775788999999999999865898-348863168855568998876562236


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH
Q ss_conf             99999999888523874516999970345888997697798529916999930101
Q gi|254780953|r  132 ERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN  187 (190)
Q Consensus       132 ~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~  187 (190)
T Consensus       215 DRANAARReLvaGGm~e~KvlRVvGmAst~~ld~~~p~~--PvNRRISIiVLnK~~  268 (424)
T PRK12799        215 DRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASDD--PVNRRISILVLNKQS  268 (424)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCC--CCCCEEEEEEECHHH
T ss_conf             668799999997689811367898512134146679998--543657899966688