HHsearch alignment for GI: 254780953 and conserved domain: TIGR03350

>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=100.00  E-value=3.5e-34  Score=210.63  Aligned_cols=131  Identities=27%  Similarity=0.400  Sum_probs=121.4

Q ss_pred             HHHHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC----HH
Q ss_conf             8999999720178358860875899852211128-813109999999999999998589948999980377872----00
Q gi|254780953|r   50 AEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGT----LK  124 (190)
Q Consensus        50 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~----~~  124 (190)
T Consensus         2 ~~~~l~~~i~~g~v~V~~~~~~v~l~l~~~~lF~~gsa~L~~~~~~~L~~va~~L~~~~~-~I~I~GHTD~~~~~~~~~~   80 (137)
T TIGR03350         2 LRALLAPEIAAGLLTVDEDGDRSVVRLRGDELFASGSAEVRADFEPLLDRIAKALAAVPG-RITVVGHTDNVPIRTSRFP   80 (137)
T ss_pred             HHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCC
T ss_conf             689999999769649999799999995798718899632098799999999999970998-5999998389877787751


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf             1112258999999998885238745169999703458889976977985299169999
Q gi|254780953|r  125 NNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQI  182 (190)
Q Consensus       125 ~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i  182 (190)
T Consensus        81 ~N~~LS~~RA~aV~~~L~~~Gi~~~r-l~~~g~G~~~P~~~n~~~~~r~~NRRVEI~i  137 (137)
T TIGR03350        81 SNWHLSEARAKAVADVLAQGGVPAGR-VRAEGRGDSEPIASNATAAGRAQNRRVEIDV  137 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHE-EEEEECCCCCCCCCCCCHHHHHHCCEEEEEC
T ss_conf             04679999999999999972997240-8997012778679993977997549089979