HHsearch alignment for GI: 254780953 and conserved domain: TIGR03350
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=100.00 E-value=3.5e-34 Score=210.63 Aligned_cols=131 Identities=27% Similarity=0.400 Sum_probs=121.4
Q ss_pred HHHHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC----HH
Q ss_conf 8999999720178358860875899852211128-813109999999999999998589948999980377872----00
Q gi|254780953|r 50 AEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGT----LK 124 (190)
Q Consensus 50 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~----~~ 124 (190)
T Consensus 2 ~~~~l~~~i~~g~v~V~~~~~~v~l~l~~~~lF~~gsa~L~~~~~~~L~~va~~L~~~~~-~I~I~GHTD~~~~~~~~~~ 80 (137)
T TIGR03350 2 LRALLAPEIAAGLLTVDEDGDRSVVRLRGDELFASGSAEVRADFEPLLDRIAKALAAVPG-RITVVGHTDNVPIRTSRFP 80 (137)
T ss_pred HHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCC
T ss_conf 689999999769649999799999995798718899632098799999999999970998-5999998389877787751
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 1112258999999998885238745169999703458889976977985299169999
Q gi|254780953|r 125 NNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQI 182 (190)
Q Consensus 125 ~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i 182 (190)
T Consensus 81 ~N~~LS~~RA~aV~~~L~~~Gi~~~r-l~~~g~G~~~P~~~n~~~~~r~~NRRVEI~i 137 (137)
T TIGR03350 81 SNWHLSEARAKAVADVLAQGGVPAGR-VRAEGRGDSEPIASNATAAGRAQNRRVEIDV 137 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHE-EEEEECCCCCCCCCCCCHHHHHHCCEEEEEC
T ss_conf 04679999999999999972997240-8997012778679993977997549089979