HHsearch alignment for GI: 254780953 and conserved domain: cd07185
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=99.96 E-value=1.3e-29 Score=185.01 Aligned_cols=103 Identities=37% Similarity=0.597 Sum_probs=97.5
Q ss_pred CEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 11128-81310999999999999999858994899998037787200111225899999999888523874516999970
Q gi|254780953|r 79 HVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGF 157 (190)
Q Consensus 79 ~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~ 157 (190)
T Consensus 3 ~v~F~~~s~~l~~~~~~~L~~ia~~l~~~~~~~v~v~GhtD~~G~~~~N~~LS~~RA~~V~~~L~~~Gi~~~r-i~~~g~ 81 (106)
T cd07185 3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASR-ITAVGY 81 (106)
T ss_pred EEEECCCCCEECHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH-EEEEEE
T ss_conf 9996899776198899999999999985899379999984899998998999999999999999984999899-899997
Q ss_pred CCCCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 3458889976977985299169999
Q gi|254780953|r 158 AYKYPIDTNDTKVGRQNNQRIEIQI 182 (190)
Q Consensus 158 G~~~p~~~n~~~~~ra~NRRVei~i 182 (190)
T Consensus 82 G~~~p~~~~~~~~~~~~NRRVei~~ 106 (106)
T cd07185 82 GESRPIASNDTEEGRAKNRRVEIVI 106 (106)
T ss_pred CCCCCCCCCCCHHHHHHCCCEEEEC
T ss_conf 5557689990988998559889969