HHsearch alignment of GI: 254780953 and MMDB domain: 1r1m_A_
>1r1m_A (A:) Outer membrane protein class 4; 1.90A {Neisseria meningitidis}
Probab=99.96 E-value=9.4e-31 Score=191.12 Aligned_cols=120 Identities=21% Similarity=0.158 Sum_probs=111.0
Q ss_pred EECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 60875899852211128-81310999999999999999858994899998037787200111225899999999888523
Q gi|254780953|r 67 RIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRG 145 (190)
Q Consensus 67 ~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g 145 (190)
..++...+.+...++|. +++.|+++++..|+.++.+|+.+|+..|.|+||||..|++.|||.||.+||.+|+.||+..|
T Consensus 4 ~~~~~~~i~l~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Ghtd~~g~~~~N~~LS~~RA~aV~~~L~~~g 83 (164)
T 1r1m_A 4 PQYVDETISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNG 83 (164)
T ss_dssp CCEEEEEEEEEHHHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEECCEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 85026079977733551897226989999999999999778981899999738989855707999999999999999859
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH
Q ss_conf 874516999970345888997697798529916999930101
Q gi|254780953|r 146 VSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190)
Q Consensus 146 ~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190)
+++.| |.+.|||+.+|+++|++++++++||||||.+.+...
T Consensus 84 i~~~r-i~~~g~G~~~P~~~~~~~~~~~~NRRVei~~~~~~~ 124 (164)
T 1r1m_A 84 VPVSR-ISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREA 124 (164)
T ss_dssp CCGGG-EEEEECTTTTCCCHHHHHHHHHTCCSSCCSSHHHHH
T ss_pred CCHHH-EEEEEECCCCCCCCCCCHHHHHHCCCCCHHHCCHHH
T ss_conf 99899-899987676888989797898531441000000355