HHsearch alignment of GI: 254780953 and MMDB domain: 2k1s_A_

>2k1s_A (A:) Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12}
Probab=100.00  E-value=5.5e-34  Score=209.19  Aligned_cols=142  Identities=33%  Similarity=0.494  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH
Q ss_conf             37888999999720178358860875899852211128-81310999999999999999858994899998037787200
Q gi|254780953|r   46 SLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLK  124 (190)
Q Consensus        46 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~  124 (190)
                      +++.+...+...+..+++.+...++...+.++..++|+ +++.|++++++.|+.++.+|+.+|+..|.|+||||..|++.
T Consensus         2 ~~~~~~~~l~~~~~~~~~~v~~~~~~~~i~~~~~v~F~~~s~~l~~~~~~~L~~ia~~L~~~p~~~i~I~Ghtd~~g~~~   81 (149)
T 2k1s_A            2 YMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHD   81 (149)
T ss_dssp             CSHHHHHHHHHHTTTTSCEEEEETTEEEEEEEHHHHBSSSSSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEECCCTTCHH
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf             78899999999871599779997999999847860665997336989999999887777318875201022413544543


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHH
Q ss_conf             1112258999999998885238745169999703458889976977985299169999301011
Q gi|254780953|r  125 NNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNI  188 (190)
Q Consensus       125 ~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~  188 (190)
                      +||.||.+||.+|++||...|+++.| |.+.|||+.+|+++|+++++|++||||||+|.++...
T Consensus        82 ~N~~LS~~RA~aV~~~l~~~gv~~~r-i~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~~~  144 (149)
T 2k1s_A           82 LNMRLSQQRADSVASALITQGVDASR-IRTQGLGPANPIASNSTAEGKAQNRRVEITLSPLLEH  144 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCGGG-EEEEECTTTCCSSCSSSHHHHHHHSEEEEEEEECSSC
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCC-CEEEEECCCCCCCCCCCHHHHHHCCCEEEEEEECCHH
T ss_conf             32017889999999999981997663-3589965657668993977897449699999615140