HHsearch alignment of GI: 254780953 and MMDB domain: 2zf8_A_155-278
>2zf8_A (A:155-278) MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus}
Probab=99.96 E-value=1.8e-29 Score=183.98 Aligned_cols=111 Identities=22% Similarity=0.336 Sum_probs=103.6
Q ss_pred ECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 52211128-81310999999999999999858994-89999803778720011122589999999988852387451699
Q gi|254780953|r 76 IPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPST-VIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFIS 153 (190)
Q Consensus 76 ~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~-~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~ 153 (190)
++..++|+ +++.|+++++..|++++.+|+.+|+. .|.|+||||+.|+..|||.||.+||.+|+.||+..|+++.| |.
T Consensus 6 ~~~~v~F~~~s~~L~~~~~~~L~~ia~~L~~~~~~~~I~I~Ghtd~~g~~~~n~~LS~~RA~~V~~~l~~~Gi~~~r-i~ 84 (124)
T 2zf8_A 6 AFTILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGLPEDR-IQ 84 (124)
T ss_dssp EEEECBSSSSSSSBCHHHHHHHHHHHHHHTTCCSCCEEEEEEC-------CCCHHHHHHHHHHHHHHHHHHSCCTTS-EE
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH-EE
T ss_conf 15289938997116999999999999999868996589999874899987887999999999999999985999799-89
Q ss_pred EEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH
Q ss_conf 9970345888997697798529916999930101
Q gi|254780953|r 154 VRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190)
Q Consensus 154 v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190)
+.|||+.+|+++|.+++++++||||||.|++...
T Consensus 85 ~~g~G~~~p~~~~~~~~~~~~NRRVeI~i~~~~~ 118 (124)
T 2zf8_A 85 VQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQV 118 (124)
T ss_dssp CCEEC------------------CEEEECCCCC-
T ss_pred EEEECCCCCCCCCCCHHHHHHCCCEEEEEEEEEE
T ss_conf 9997565777999498899734989999986797