Query gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] Match_columns 190 No_of_seqs 126 out of 7161 Neff 9.4 Searched_HMMs 33803 Date Wed Jun 1 19:30:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780953.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2k1s_A Inner membrane lipopro 100.0 5.5E-34 1.6E-38 209.2 16.2 142 46-188 2-144 (149) 2 >3ldt_A Outer membrane protein 100.0 1.4E-32 4.2E-37 201.3 13.2 137 50-187 26-163 (169) 3 >3khn_A MOTB protein, putative 100.0 3.8E-32 1.1E-36 198.9 15.3 143 46-189 19-167 (174) 4 >2hqs_H Peptidoglycan-associat 100.0 2.5E-30 7.5E-35 188.7 10.3 116 74-190 2-118 (118) 5 >1r1m_A Outer membrane protein 100.0 9.4E-31 2.8E-35 191.1 6.3 120 67-187 4-124 (164) 6 >2aiz_P Outer membrane protein 100.0 2.4E-30 7E-35 188.9 8.2 111 70-181 22-133 (134) 7 >2zov_A Chemotaxis protein MOT 100.0 2.6E-29 7.6E-34 183.1 10.7 122 62-187 52-183 (210) 8 >2zf8_A MOTY, component of sod 100.0 1.8E-29 5.2E-34 184.0 8.2 111 76-187 6-118 (124) 9 >2zvy_A Chemotaxis protein MOT 100.0 1.8E-28 5.3E-33 178.3 12.6 124 62-188 43-173 (183) 10 >3cyp_B Chemotaxis protein MOT 100.0 1.5E-28 4.5E-33 178.8 12.1 109 78-187 3-118 (138) 11 >2fmp_A DNA polymerase beta; n 56.1 4.7 0.00014 19.5 1.2 97 87-185 31-143 (143) 12 >3dfe_A Putative PII-like sign 52.6 8.8 0.00026 18.0 2.1 55 131-185 15-70 (111) 13 >1rbl_M Ribulose 1,5 bisphosph 47.4 18 0.00055 16.2 3.7 29 91-119 66-94 (109) 14 >1v97_A XD, xanthine dehydroge 42.9 12 0.00034 17.3 1.5 24 95-119 19-42 (62) 15 >1bxn_I Rubisco, protein (ribu 42.3 22 0.00066 15.8 3.7 31 90-120 59-89 (105) 16 >1svd_M Ribulose bisphosphate 42.0 23 0.00067 15.7 3.8 28 91-118 68-95 (110) 17 >1p99_A Hypothetical protein P 41.7 12 0.00035 17.3 1.4 20 125-144 140-159 (183) 18 >3iib_A Peptidase M28; YP_9267 41.4 23 0.00068 15.7 5.8 55 107-161 86-142 (282) 19 >1gk8_I Ribulose bisphosphate 39.9 24 0.00072 15.5 3.7 30 90-119 84-113 (140) 20 >2vx5_A Cellvibrio japonicus m 39.9 12 0.00036 17.2 1.2 27 90-116 214-241 (396) 21 >1bwv_S Rubisco, protein (ribu 39.5 25 0.00073 15.5 3.7 29 91-119 60-88 (105) 22 >2cz4_A Hypothetical protein T 38.6 26 0.00076 15.4 3.6 32 131-162 34-65 (119) 23 >2eg2_A Nitrogen regulatory pr 35.7 29 0.00084 15.2 4.3 33 131-163 10-42 (97) 24 >2f2f_C CDT C, cytolethal dist 34.6 9.5 0.00028 17.8 0.0 21 2-23 1-21 (186) 25 >3c9h_A ABC transporter, subst 33.5 22 0.00066 15.8 1.7 25 1-25 1-28 (355) 26 >1tgl_A Triacyl-glycerol acylh 33.0 32 0.00094 14.9 6.5 64 92-168 119-183 (269) 27 >2j9c_A GLNK1, hypothetical ni 32.3 33 0.00096 14.8 2.5 53 131-183 12-68 (99) 28 >3k6v_A Solute-binding protein 31.8 33 0.00099 14.8 3.6 25 4-28 12-36 (185) 29 >1hwu_A PII protein; herbaspir 31.3 34 0.001 14.7 4.0 34 131-164 10-43 (97) 30 >2w7y_A FCSSBP, probable sugar 28.3 21 0.00061 15.9 0.9 26 3-28 8-33 (185) 31 >2gw8_A PII signal transductio 25.5 43 0.0013 14.2 4.6 33 131-163 12-44 (114) 32 >2bcq_A DNA polymerase lambda; 23.2 48 0.0014 13.9 3.4 86 89-184 21-127 (128) 33 >1tia_A Lipase; hydrolase(carb 20.2 56 0.0016 13.5 7.2 59 93-167 121-179 (279) 34 >2if1_A EIF1, SUI1; translatio 20.1 51 0.0015 13.7 1.6 24 134-157 103-126 (126) No 1 >>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12} (A:) Probab=100.00 E-value=5.5e-34 Score=209.19 Aligned_cols=142 Identities=33% Similarity=0.494 Sum_probs=134.5 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH Q ss_conf 37888999999720178358860875899852211128-81310999999999999999858994899998037787200 Q gi|254780953|r 46 SLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLK 124 (190) Q Consensus 46 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~ 124 (190) +++.+...+...+..+++.+...++...+.++..++|+ +++.|++++++.|+.++.+|+.+|+..|.|+||||..|++. T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~~~~i~~~~~v~F~~~s~~l~~~~~~~L~~ia~~L~~~p~~~i~I~Ghtd~~g~~~ 81 (149) T 2k1s_A 2 YMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHD 81 (149) T ss_dssp CSHHHHHHHHHHTTTTSCEEEEETTEEEEEEEHHHHBSSSSSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEECCCTTCHH T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC T ss_conf 78899999999871599779997999999847860665997336989999999887777318875201022413544543 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHH Q ss_conf 1112258999999998885238745169999703458889976977985299169999301011 Q gi|254780953|r 125 NNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNI 188 (190) Q Consensus 125 ~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~ 188 (190) +||.||.+||.+|++||...|+++.| |.+.|||+.+|+++|+++++|++||||||+|.++... T Consensus 82 ~N~~LS~~RA~aV~~~l~~~gv~~~r-i~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~~~ 144 (149) T 2k1s_A 82 LNMRLSQQRADSVASALITQGVDASR-IRTQGLGPANPIASNSTAEGKAQNRRVEITLSPLLEH 144 (149) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGG-EEEEECTTTCCSSCSSSHHHHHHHSEEEEEEEECSSC T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCC-CEEEEECCCCCCCCCCCHHHHHHCCCEEEEEEECCHH T ss_conf 32017889999999999981997663-3589965657668993977897449699999615140 No 2 >>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila} (A:) Probab=100.00 E-value=1.4e-32 Score=201.29 Aligned_cols=137 Identities=28% Similarity=0.433 Sum_probs=127.2 Q ss_pred HHHHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH Q ss_conf 8999999720178358860875899852211128-813109999999999999998589948999980377872001112 Q gi|254780953|r 50 AEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLL 128 (190) Q Consensus 50 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~ 128 (190) ....+.......++.+...+..+.+.++..++|. +++.|+++++..|+.++.+|+.+|+..|.|+||||..|+..|||. T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~F~~~s~~l~~~~~~~L~~la~~l~~~p~~~i~I~Ghtd~~g~~~~n~~ 105 (169) T 3ldt_A 26 SKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFXFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRK 105 (169) T ss_dssp HHHHHHHHHHHTTCEEEEETTEEEEEEETTTCCC-CCHHHHHHHCHHHHHHHHHHTTCTTSCEEEEEECTTSCCC--CHH T ss_pred HHHHHHHHHHCCCCEEEEECCEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH T ss_conf 99999999854995799969989999068825708963269889999999999999789957999997289897667577 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH Q ss_conf 25899999999888523874516999970345888997697798529916999930101 Q gi|254780953|r 129 ISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190) Q Consensus 129 LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190) ||.+||.+|+.||+..|+.+.| |.+.|||+.+|+++|+++++|++||||||+|+++.. T Consensus 106 LS~~RA~aV~~~L~~~Gi~~~r-i~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~~ 163 (169) T 3ldt_A 106 LSQAQAETXXTFLWANGIAAKR-LKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSEG 163 (169) T ss_dssp HHHHHHHHHHHHHHHTTCCTTT-EEECCTTCTTSCCCTTTSCGGGGTSEEEEEEECCCC T ss_pred HHHHHHHHHHHHHHHCCCCHHH-EEEEEECCCCCCCCCCCHHHHHHCCCEEEEEEECCC T ss_conf 9999999999999985999899-899997566767999297899854988999996898 No 3 >>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str} (A:) Probab=100.00 E-value=3.8e-32 Score=198.88 Aligned_cols=143 Identities=20% Similarity=0.256 Sum_probs=129.4 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC--- Q ss_conf 37888999999720178358860875899852211128-81310999999999999999858994899998037787--- Q gi|254780953|r 46 SLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIG--- 121 (190) Q Consensus 46 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g--- 121 (190) ..+.....+........+.+...++.+.+.++..++|+ +++.|+++++..|..++.+|+.+|...|.|+||||+.| T Consensus 19 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~F~~gs~~l~~~~~~~L~~ia~~l~~~~~~~i~I~GhtD~~g~~~ 98 (174) T 3khn_A 19 TYNEXRTYFTVNGVEGVIGAVFDEGVITLRVPSEVLFAPGAVELAPGADRVLATLKDLFIRRREQNINIKGFTDDVQPSA 98 (174) T ss_dssp HHHHHHHHHHHTTCTTTCEEEEETTEEEEEEEHHHHBCTTCCSBCTTHHHHHHHHHHHHHHTTTCEEEEEEECCSCCCCT T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC T ss_conf 99999999986146775699983998999946873246997402988999999998754038742999974036766655 Q ss_pred --CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHHC Q ss_conf --20011122589999999988852387451699997034588899769779852991699993010113 Q gi|254780953|r 122 --TLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNIK 189 (190) Q Consensus 122 --~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~k 189 (190) ++.+||.||++||.+|+.||...|+.+.| |.+.|||+++|+++|+++++|++||||||.|.++...+ T Consensus 99 ~~~~~~n~~LS~~RA~~V~~~l~~~gi~~~r-i~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~~~~ 167 (174) T 3khn_A 99 NARFKDNWEVSALRSVNVLRYFLGAGIEPAR-LTATGLGELDPLFPNTSDENRARNRRVEFVLERRVVRE 167 (174) T ss_dssp TSSCSSHHHHHHHHHHHHHHHHHHTTCCGGG-EEEEEEETSSCSSCSSSHHHHHHHSEEEEEEEC----C T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCCCCCCCCHHHHHHCCCEEEEEEECCCCC T ss_conf 6643201368899999999999871478666-79998424577799939789987396899998545788 No 4 >>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} (H:) Probab=99.97 E-value=2.5e-30 Score=188.71 Aligned_cols=116 Identities=23% Similarity=0.342 Sum_probs=109.1 Q ss_pred EEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 9852211128-813109999999999999998589948999980377872001112258999999998885238745169 Q gi|254780953|r 74 CYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFI 152 (190) Q Consensus 74 ~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i 152 (190) +.++..++|+ +++.|+++++..|++++..|+.+|+..|.|+||||..|++.+||.||.+||.+|+.||...|+.+.| + T Consensus 2 i~l~~~v~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Ghtd~~g~~~~n~~LS~~RA~aV~~~l~~~g~~~~r-i 80 (118) T 2hqs_H 2 LQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQ-I 80 (118) T ss_dssp --CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGG-E T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-E T ss_conf 667999994099864598899999999999976999489998423323210366658899887689999975984340-6 Q ss_pred EEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHHCC Q ss_conf 99970345888997697798529916999930101139 Q gi|254780953|r 153 SVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNIKK 190 (190) Q Consensus 153 ~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~k~ 190 (190) .+.|||+.+|++++++++++++||||||.|.++...++ T Consensus 81 ~~~g~G~~~p~~~~~~~~~~~~nRRVei~i~~~~~~~~ 118 (118) T 2hqs_H 81 SIVSYGKEKPAVLGHDEAAYSKNRRAVLVYLEHHHHHH 118 (118) T ss_dssp EEEECTTSSCSSCCSSHHHHHHHSEEEEECC------- T ss_pred EEEECCCCCCCCCCCCHHHHHHCCCEEEEEEEEECCCC T ss_conf 99982553778889197899764979999998506779 No 5 >>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} (A:) Probab=99.96 E-value=9.4e-31 Score=191.12 Aligned_cols=120 Identities=21% Similarity=0.158 Sum_probs=111.0 Q ss_pred EECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 60875899852211128-81310999999999999999858994899998037787200111225899999999888523 Q gi|254780953|r 67 RIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRG 145 (190) Q Consensus 67 ~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g 145 (190) ..++...+.+...++|. +++.|+++++..|+.++.+|+.+|+..|.|+||||..|++.|||.||.+||.+|+.||+..| T Consensus 4 ~~~~~~~i~l~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Ghtd~~g~~~~N~~LS~~RA~aV~~~L~~~g 83 (164) T 1r1m_A 4 PQYVDETISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNG 83 (164) T ss_dssp CCEEEEEEEEEHHHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTT T ss_pred CCEECCEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 85026079977733551897226989999999999999778981899999738989855707999999999999999859 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH Q ss_conf 874516999970345888997697798529916999930101 Q gi|254780953|r 146 VSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190) Q Consensus 146 ~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190) +++.| |.+.|||+.+|+++|++++++++||||||.+.+... T Consensus 84 i~~~r-i~~~g~G~~~P~~~~~~~~~~~~NRRVei~~~~~~~ 124 (164) T 1r1m_A 84 VPVSR-ISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREA 124 (164) T ss_dssp CCGGG-EEEEECTTTTCCCHHHHHHHHHTCCSSCCSSHHHHH T ss_pred CCHHH-EEEEEECCCCCCCCCCCHHHHHHCCCCCHHHCCHHH T ss_conf 99899-899987676888989797898531441000000355 No 6 >>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} (P:) Probab=99.96 E-value=2.4e-30 Score=188.87 Aligned_cols=111 Identities=22% Similarity=0.316 Sum_probs=102.8 Q ss_pred CEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 75899852211128-81310999999999999999858994899998037787200111225899999999888523874 Q gi|254780953|r 70 DMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSS 148 (190) Q Consensus 70 ~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~ 148 (190) ....+.++..++|+ +++.|+++++..|+.++..|+.+|+..|.|+||||..|++.|||.||++||.+|++||+..|+.+ T Consensus 22 ~~~~~~~~~~i~F~~~s~~l~~~~~~~L~~~a~~l~~~p~~~i~I~Ghtd~~g~~~~N~~LS~~RA~aV~~~l~~~g~~~ 101 (134) T 2aiz_P 22 VADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDA 101 (134) T ss_dssp HHHHTTTSCEEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCG T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99996058808805998004988999999999999869984899973124343321012578999999999999708753 Q ss_pred CCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEE Q ss_conf 516999970345888997697798529916999 Q gi|254780953|r 149 NRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQ 181 (190) Q Consensus 149 ~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~ 181 (190) .| |.+.|||+.+|+++|+++++|++||||||+ T Consensus 102 ~r-i~~~g~G~~~p~~~~~~~~~~~~NRRVei~ 133 (134) T 2aiz_P 102 GK-LGTVSYGEEKPAVLGHDEAAYSKNRRAVLA 133 (134) T ss_dssp GG-EEEEECTTTSCSSCSCSHHHHHHHSEEEEE T ss_pred CE-EEEEECCCCCCCCCCCCHHHHHCCCCEEEE T ss_conf 20-345763443778889197787533989995 No 7 >>2zov_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium} (A:) Probab=99.96 E-value=2.6e-29 Score=183.09 Aligned_cols=122 Identities=19% Similarity=0.243 Sum_probs=102.2 Q ss_pred CCEEEEECCEEEE---EECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC-----CCHHHHHHHHHH Q ss_conf 8358860875899---852211128-8131099999999999999985899489999803778-----720011122589 Q gi|254780953|r 62 GIVVSRIGDMITC---YIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSI-----GTLKNNLLISQE 132 (190) Q Consensus 62 ~~~~~~~~~~~~~---~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~-----g~~~~N~~LS~~ 132 (190) ...+........+ .++..++|. +++.|+++++..|+.|+.+|+.+|. .|.|+||||+. |++.|||.||++ T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~i~F~~~sa~l~~~~~~~l~~ia~~l~~~~~-~i~I~GhtD~~~~~~~G~~~~N~~LS~~ 130 (210) T 2zov_A 52 HLKIDLVQEGLRIQIIDSQNRPXFKTGSAEVEPYXRDILRAIAPVLNGIPN-RISLAGHTDDFPYANGEKGYSNWELSAD 130 (210) T ss_dssp GEEEEEETTEEEEEEECCSSSCSBCTTSCCBCHHHHHHHHHHHHHHTTSCC-CEEEEEEEECSCCCSSCSSCCHHHHHHH T ss_pred CCEEEECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCHHHHHHH T ss_conf 715998179529999848998486999744698799999999999983386-6999985487764457764205789999 Q ss_pred HHHHHHHHHHHH-CCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH Q ss_conf 999999988852-3874516999970345888997697798529916999930101 Q gi|254780953|r 133 RADVIKSYLIQR-GVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190) Q Consensus 133 RA~~V~~~L~~~-g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190) ||.+|+.||+.. |+.+.| |.+.|||+.+|+++|+ ++|++||||||+|++... T Consensus 131 RA~aV~~~L~~~~gi~~~r-i~~~g~G~~~p~~~n~--~~~~~NRRVeI~i~~~~~ 183 (210) T 2zov_A 131 RANASRRELVAGGLDNGKV-LRVVGXAATXRLSDRG--PDDAINRRISLLVLNKQA 183 (210) T ss_dssp HHHHHHHHHHHTTCCTTCE-EEEEEECCC-----------CCCEEEEEEEEECHHH T ss_pred HHHHHHHHHHHCCCCCCCE-EEEEEECCCCCCCCCC--CCHHHCCCEEEEEECCHH T ss_conf 9999999999859980358-9999868887899899--645872988999978477 No 8 >>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} (A:155-278) Probab=99.96 E-value=1.8e-29 Score=183.98 Aligned_cols=111 Identities=22% Similarity=0.336 Sum_probs=103.6 Q ss_pred ECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 52211128-81310999999999999999858994-89999803778720011122589999999988852387451699 Q gi|254780953|r 76 IPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPST-VIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFIS 153 (190) Q Consensus 76 ~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~-~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~ 153 (190) ++..++|+ +++.|+++++..|++++.+|+.+|+. .|.|+||||+.|+..|||.||.+||.+|+.||+..|+++.| |. T Consensus 6 ~~~~v~F~~~s~~L~~~~~~~L~~ia~~L~~~~~~~~I~I~Ghtd~~g~~~~n~~LS~~RA~~V~~~l~~~Gi~~~r-i~ 84 (124) T 2zf8_A 6 AFTILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGLPEDR-IQ 84 (124) T ss_dssp EEEECBSSSSSSSBCHHHHHHHHHHHHHHTTCCSCCEEEEEEC-------CCCHHHHHHHHHHHHHHHHHHSCCTTS-EE T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH-EE T ss_conf 15289938997116999999999999999868996589999874899987887999999999999999985999799-89 Q ss_pred EEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH Q ss_conf 9970345888997697798529916999930101 Q gi|254780953|r 154 VRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190) Q Consensus 154 v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190) +.|||+.+|+++|.+++++++||||||.|++... T Consensus 85 ~~g~G~~~p~~~~~~~~~~~~NRRVeI~i~~~~~ 118 (124) T 2zf8_A 85 VQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQV 118 (124) T ss_dssp CCEEC------------------CEEEECCCCC- T ss_pred EEEECCCCCCCCCCCHHHHHHCCCEEEEEEEEEE T ss_conf 9997565777999498899734989999986797 No 9 >>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A (A:) Probab=99.96 E-value=1.8e-28 Score=178.35 Aligned_cols=124 Identities=22% Similarity=0.289 Sum_probs=101.8 Q ss_pred CCEEEEECCEEEE-EECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC-----CCHHHHHHHHHHHH Q ss_conf 8358860875899-852211128-8131099999999999999985899489999803778-----72001112258999 Q gi|254780953|r 62 GIVVSRIGDMITC-YIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSI-----GTLKNNLLISQERA 134 (190) Q Consensus 62 ~~~~~~~~~~~~~-~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~-----g~~~~N~~LS~~RA 134 (190) .+.+...+....+ .++..++|+ +++.|+++++..|+.++..|+.+|. .|.|+||||+. |++.|||.||.+|| T Consensus 43 ~~~~~~~~~~~~~~~~~~~i~F~~~sa~l~~~~~~~l~~la~~l~~~~~-~i~I~Ghtd~~~~~~~g~~~~N~~LS~~RA 121 (183) T 2zvy_A 43 KIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPN-RISLAGHTDDFPYANGEKGYSNWELSADRA 121 (183) T ss_dssp EEEEETTEEEEEEECCSSSCSBCTTCCSBCHHHHHHHHHHHHHHTTSCC-CEEEEEECCSSCTTCSTTSSCHHHHHHHHH T ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCCCHHHHHHHHH T ss_conf 5998078319999867888686899840581677999999999971476-089997236667555775311689999999 Q ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHH Q ss_conf 999998885238745169999703458889976977985299169999301011 Q gi|254780953|r 135 DVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNI 188 (190) Q Consensus 135 ~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~ 188 (190) .+|++||+..+..+.+++.+.|||+.+|+.+|. +++++||||||.|+++... T Consensus 122 ~aV~~~L~~~~gi~~~ri~~~g~G~~~p~~~n~--~~~~~NRRVei~i~~~~~~ 173 (183) T 2zvy_A 122 NASRRELVAGGLDNGKVLRVVGMAATMRLSDRG--PDDAINRRISLLVLNKQAE 173 (183) T ss_dssp HHHHHHHHHTTCCTTCEEEEEECTTTTCSSCSS--TTGGGGSEEEEEEECHHHH T ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC--CCHHHHCCEEEEEECCHHH T ss_conf 999999987058987889999967787789899--6337709989999896789 No 10 >>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* (B:) Probab=99.96 E-value=1.5e-28 Score=178.77 Aligned_cols=109 Identities=27% Similarity=0.413 Sum_probs=100.1 Q ss_pred CCEECC-CHHH-CCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 211128-8131-099999999999999985899-489999803778----720011122589999999988852387451 Q gi|254780953|r 78 VHVSFV-SEVF-LEKKFLPMLQLIATILNKFPS-TVIAIQSHTDSI----GTLKNNLLISQERADVIKSYLIQRGVSSNR 150 (190) Q Consensus 78 ~~~~f~-~~a~-l~~~~~~~L~~ia~~l~~~~~-~~i~I~GHTD~~----g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r 150 (190) +.+||+ +++. |+++++..|++|+.+|+.+|+ ..|.|+||||+. |++.+||.||.+||.+|+.||+..|+++.| T Consensus 3 ~~v~F~~~ss~~l~~~~~~~l~~ia~~l~~~~~~~~I~I~GhtD~~~~~~g~~~~N~~LS~~RA~~V~~~l~~~gi~~~r 82 (138) T 3cyp_B 3 DPFTFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQ 82 (138) T ss_dssp CCEECSSTTCCCCCHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTCCGGG T ss_pred CCEECCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE T ss_conf 86663899624339989999999999999689970899998608988777870779999999999999999985999565 Q ss_pred EEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH Q ss_conf 6999970345888997697798529916999930101 Q gi|254780953|r 151 FISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190) Q Consensus 151 ~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190) |.+.|||+.+|+++|+++++|++||||||.|.+... T Consensus 83 -i~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~~ 118 (138) T 3cyp_B 83 -LSFSSYGSTNPIAPNDSLENRMKNNRVEIFFSTDAN 118 (138) T ss_dssp -EEEEECTTCSCSSCTTSHHHHHHHSEEEEEEEEEHH T ss_pred -EEEEEECCCCCCCCCCCHHHHHHCCCEEEEEECCHH T ss_conf -999984556767999397899724968999970827 No 11 >>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} (A:120-262) Probab=56.08 E-value=4.7 Score=19.54 Aligned_cols=97 Identities=12% Similarity=0.208 Sum_probs=49.9 Q ss_pred HCCHHHHHHHHHHHHHHHHC-CCCEEEEEEEC----CCCCC---------HHHHHHHHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 10999999999999999858-99489999803----77872---------001112258999999998885238745169 Q gi|254780953|r 87 FLEKKFLPMLQLIATILNKF-PSTVIAIQSHT----DSIGT---------LKNNLLISQERADVIKSYLIQRGVSSNRFI 152 (190) Q Consensus 87 ~l~~~~~~~L~~ia~~l~~~-~~~~i~I~GHT----D~~g~---------~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i 152 (190) ....++.+..+.|...|+.. +...+.+.|-. ...|. ...-...-..=...|..+|.+.+..... + T Consensus 31 ipr~ea~~i~~~i~~~l~~~~~~~~v~~~GS~RRgket~gDiDili~~~~~~~~~~~~~~~l~~v~~~l~~~~~i~~~-l 109 (143) T 2fmp_A 31 IPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDT-L 109 (143) T ss_dssp EEHHHHHHHHHHHHHHHHHHCTTCEEEECHHHHTTCSEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEE-E T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE-E T ss_conf 349999987899999998649850797035222244556775668855875420110267999999998647876431-0 Q ss_pred EEEEECCCCCCCCCCCHHHHH--CCCCEEEEEECC Q ss_conf 999703458889976977985--299169999301 Q gi|254780953|r 153 SVRGFAYKYPIDTNDTKVGRQ--NNQRIEIQIFPR 185 (190) Q Consensus 153 ~v~g~G~~~p~~~n~~~~~ra--~NRRVei~i~~~ 185 (190) ..|.....-+.......... .-|||+|.+.|+ T Consensus 110 -~~g~~k~~~~~~~~~~~~~~~~~~rRVDl~~vP~ 143 (143) T 2fmp_A 110 -SKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPK 143 (143) T ss_dssp -EECSSEEEEEECCCCCTTCCCCCCEEEEEEECCG T ss_pred -CCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCH T ss_conf -3787158999823664554567855889998168 No 12 >>3dfe_A Putative PII-like signaling protein; YP_323533.1, structural genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} (A:) Probab=52.64 E-value=8.8 Score=18.02 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=26.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCH-HHHHCCCCEEEEEECC Q ss_conf 899999999888523874516999970345888997697-7985299169999301 Q gi|254780953|r 131 QERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTK-VGRQNNQRIEIQIFPR 185 (190) Q Consensus 131 ~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~-~~ra~NRRVei~i~~~ 185 (190) ..|...|.+.|...|+..--...+.|+|..+........ .....|.|+|+++.+. T Consensus 15 ~~~~~~v~~aL~~~Gv~G~Tv~~v~G~G~~~g~~~~~~~~~~~~~~v~ie~vV~~d 70 (111) T 3dfe_A 15 KVLLKKVAKIIEEAGATGYTVVDTGGKGSRNVRSTGKPNTSDTDSNVKFEVLTENR 70 (111) T ss_dssp GGGHHHHHHHHHHHTCSCCEEEEEBC------------------CEEEEEEEESSH T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCH T ss_conf 99999999999857998879995472388886266613201246836999998574 No 13 >>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase (small chain); lyase(carbon-carbon); HET: CAP; 2.20A {Synechococcus elongatus pcc 6301} (M:) Probab=47.43 E-value=18 Score=16.22 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=21.1 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCC Q ss_conf 99999999999998589948999980377 Q gi|254780953|r 91 KFLPMLQLIATILNKFPSTVIAIQSHTDS 119 (190) Q Consensus 91 ~~~~~L~~ia~~l~~~~~~~i~I~GHTD~ 119 (190) +...+|.+|...++.||+..|+|.|+-.. T Consensus 66 d~~~Vl~ele~c~~~~p~~YVRliG~D~~ 94 (109) T 1rbl_M 66 APQQVLDEVRECRSEYGDCYIRVAGFDNI 94 (109) T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEEEEETT T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEECC T ss_conf 67899999999999799766989999688 No 14 >>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} (A:223-284) Probab=42.90 E-value=12 Score=17.35 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCC Q ss_conf 9999999998589948999980377 Q gi|254780953|r 95 MLQLIATILNKFPSTVIAIQSHTDS 119 (190) Q Consensus 95 ~L~~ia~~l~~~~~~~i~I~GHTD~ 119 (190) .++++.+++.++|+..| |.|.||= T Consensus 19 tl~el~~ll~~~P~A~i-iaGgTdl 42 (62) T 1v97_A 19 TLKELLDLKAQHPEAKL-VVGNTEI 42 (62) T ss_dssp SHHHHHHHHHHCTTCEE-CSSCTTH T ss_pred CHHHHHHHHHHCCCCEE-EEECCHH T ss_conf 79999999987899879-9974647 No 15 >>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small chain); lyase (carbon-carbon); 2.70A {Ralstonia eutropha} (I:1-105) Probab=42.27 E-value=22 Score=15.75 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=23.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCCC Q ss_conf 9999999999999985899489999803778 Q gi|254780953|r 90 KKFLPMLQLIATILNKFPSTVIAIQSHTDSI 120 (190) Q Consensus 90 ~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~ 120 (190) .+..++|.+|...++.||+..|++.|+-... T Consensus 59 ~d~~~Vl~eie~c~~~~p~~YVRliG~D~~~ 89 (105) T 1bxn_I 59 RDAAGILMEINNARNTFPNHYIRVTAFDSTH 89 (105) T ss_dssp CCHHHHHHHHHHHHHHCSSSEEEEEEECTTT T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEEECCC T ss_conf 8999999999999998998769999994887 No 16 >>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} (M:) Probab=41.99 E-value=23 Score=15.73 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=22.9 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 9999999999999858994899998037 Q gi|254780953|r 91 KFLPMLQLIATILNKFPSTVIAIQSHTD 118 (190) Q Consensus 91 ~~~~~L~~ia~~l~~~~~~~i~I~GHTD 118 (190) +..++|.+|...++.||+..|++.|+-. T Consensus 68 ~~~~Vl~ele~c~~~~p~~YVRlig~D~ 95 (110) T 1svd_M 68 NVDNVLAEIEACRSAYPTHQVKLVAYDN 95 (110) T ss_dssp CHHHHHHHHHHHHHHSTTSEEEEEEEET T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEEC T ss_conf 7889999999999979977699999717 No 17 >>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:1-119,A:232-295) Probab=41.69 E-value=12 Score=17.28 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 11122589999999988852 Q gi|254780953|r 125 NNLLISQERADVIKSYLIQR 144 (190) Q Consensus 125 ~N~~LS~~RA~~V~~~L~~~ 144 (190) +-.-.-.-....|+.|+.+. T Consensus 140 ~~~l~~~~~s~~v~~~i~~~ 159 (183) T 1p99_A 140 YAKIVELYHSKEAQKALQED 159 (183) T ss_dssp HHHHHHHHHSHHHHHHHHHH T ss_pred HHHHHHHHCCHHHHHHHHHC T ss_conf 99999997799999999973 No 18 >>3iib_A Peptidase M28; YP_926796.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} (A:1-69,A:232-444) Probab=41.39 E-value=23 Score=15.67 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=27.5 Q ss_pred CCCEEEEEEECCCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC Q ss_conf 99489999803778720--01112258999999998885238745169999703458 Q gi|254780953|r 107 PSTVIAIQSHTDSIGTL--KNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKY 161 (190) Q Consensus 107 ~~~~i~I~GHTD~~g~~--~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~ 161 (190) |+-.|.|.||.|+.+.- +.-..-+..=.-.++++|...+..+.|-|++..++..+ T Consensus 86 ~~e~Vii~aHlDS~~~g~GA~Dd~sGva~~leaar~L~~~~~~p~rtI~fv~~~~EE 142 (282) T 3iib_A 86 ADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEE 142 (282) T ss_dssp EEEEEEEEEECCCCSSSCCTTTTHHHHHHHHHHHHHHHTSSSCCSEEEEEEEESCGG T ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC T ss_conf 985899950124554558966761458999999999976325766652699963664 No 19 >>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} (I:) Probab=39.94 E-value=24 Score=15.54 Aligned_cols=30 Identities=13% Similarity=0.344 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCC Q ss_conf 999999999999998589948999980377 Q gi|254780953|r 90 KKFLPMLQLIATILNKFPSTVIAIQSHTDS 119 (190) Q Consensus 90 ~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~ 119 (190) .+...+|.+|...++.||+..|+|.|+=.. T Consensus 84 ~d~~~Vl~ele~C~~~~p~~YVRliG~D~~ 113 (140) T 1gk8_I 84 RDPMQVLREIVACTKAFPDAYVRLVAFDNQ 113 (140) T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEEEEETT T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEECCC T ss_conf 898999999999987688747999886165 No 20 >>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:) Probab=39.87 E-value=12 Score=17.25 Aligned_cols=27 Identities=4% Similarity=0.114 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHHHC-CCCEEEEEEE Q ss_conf 99999999999999858-9948999980 Q gi|254780953|r 90 KKFLPMLQLIATILNKF-PSTVIAIQSH 116 (190) Q Consensus 90 ~~~~~~L~~ia~~l~~~-~~~~i~I~GH 116 (190) .+....++.+++.+++. |+..|.+.|- T Consensus 214 ~~y~~~~~~~~~~ir~~~p~~~i~~~~~ 241 (396) T 2vx5_A 214 QDYIALWRFTVHYLRDEKKLRNLIYAYS 241 (396) T ss_dssp HHHHHHHHHHHHHHHTTSCCCSEEEEEC T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 9999999999999997368741899960 No 21 >>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation,complex (rubisco/reaction intermediate), high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} (S:1-105) Probab=39.46 E-value=25 Score=15.50 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCC Q ss_conf 99999999999998589948999980377 Q gi|254780953|r 91 KFLPMLQLIATILNKFPSTVIAIQSHTDS 119 (190) Q Consensus 91 ~~~~~L~~ia~~l~~~~~~~i~I~GHTD~ 119 (190) +...+|.+|...++.+|+..|++.|+-.. T Consensus 60 ~~~~Vl~eie~C~~~~p~~YVRliG~D~~ 88 (105) T 1bwv_S 60 DPAAVLFEINACRKARSNFYIKVVGFSSV 88 (105) T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEEEEECC T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEECC T ss_conf 99999999999999798676889999776 No 22 >>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus HB8} (A:) Probab=38.55 E-value=26 Score=15.42 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=14.8 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC Q ss_conf 89999999988852387451699997034588 Q gi|254780953|r 131 QERADVIKSYLIQRGVSSNRFISVRGFAYKYP 162 (190) Q Consensus 131 ~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p 162 (190) ..+.+.|.+.|...|+..--...+.|+|...- T Consensus 34 ~~~l~~V~~aL~~~Gv~G~Tv~~v~G~G~~~~ 65 (119) T 2cz4_A 34 SLLEKRLVEEVKRLGAKGYTITPARGEGSRGI 65 (119) T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCT T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC T ss_conf 88899999999987995379997489744687 No 23 >>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A (A:1-97) Probab=35.73 E-value=29 Score=15.16 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=25.8 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC Q ss_conf 899999999888523874516999970345888 Q gi|254780953|r 131 QERADVIKSYLIQRGVSSNRFISVRGFAYKYPI 163 (190) Q Consensus 131 ~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~ 163 (190) ..|...|.+.|...|+..--...+.|+|..+.. T Consensus 10 p~k~~~v~~aL~~~Gv~g~Tv~~V~G~G~~~~~ 42 (97) T 2eg2_A 10 PFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGH 42 (97) T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEC------ T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC T ss_conf 999999999999689973999952612677775 No 24 >>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} (C:) Probab=34.64 E-value=9.5 Score=17.82 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=14.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCC Q ss_conf 4789999999999975147887 Q gi|254780953|r 2 IKELGLSMFIMTTISGCGLASR 23 (190) Q Consensus 2 ~k~l~l~~~~~~~l~g~~~~~~ 23 (190) |||+.+ +|+++++++|+..+. T Consensus 1 MkK~~i-~f~~~~i~~~ss~~~ 21 (186) T 2f2f_C 1 MKKYLL-SFLLSMILTLTSHAE 21 (186) T ss_dssp ---------------------- T ss_pred CCHHHH-HHHHHHHHHCCCCCC T ss_conf 931169-999999986114665 No 25 >>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:) Probab=33.49 E-value=22 Score=15.75 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=12.9 Q ss_pred CHHHHHHHHHHHHH---HHHCCCCCCCC Q ss_conf 94789999999999---97514788765 Q gi|254780953|r 1 MIKELGLSMFIMTT---ISGCGLASREK 25 (190) Q Consensus 1 m~k~l~l~~~~~~~---l~g~~~~~~~~ 25 (190) |+|++.++++++++ ++||+...... T Consensus 1 Mkk~~~~~~~~~~~~~~la~c~~~~~~~ 28 (355) T 3c9h_A 1 MRICLFLCLCLCMASPALAQVAVFPALS 28 (355) T ss_dssp ---------------CEEEEEEEECCTT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9369999999999999999987433335 No 26 >>1tgl_A Triacyl-glycerol acylhydrolase; hydrolase(carboxylic esterase); 1.90A {Rhizomucor miehei} (A:) Probab=33.05 E-value=32 Score=14.91 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=39.4 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEECCCCCCCCCCC Q ss_conf 9999999999998589948999980377872001112258999999998885238-7451699997034588899769 Q gi|254780953|r 92 FLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGV-SSNRFISVRGFAYKYPIDTNDT 168 (190) Q Consensus 92 ~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~-~~~r~i~v~g~G~~~p~~~n~~ 168 (190) ....++.+...+.++|+..|.|.||. |.-.=|.-.+-+|..+.. .+.+.+.+..||. |..-|.. T Consensus 119 ~~~i~~~i~~~~~~~~~~~i~itGHS-----------LGGAlA~l~a~~l~~~~~~~~~~~i~~~tfG~--PrvGn~~ 183 (269) T 1tgl_A 119 QNELVATVLDQFKQYPSYKVAVTGHS-----------LGGATALLCALDLYQREEGLSSSNLFLYTQGQ--PRVGNPA 183 (269) T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCC-----------HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC--CCCCCHH T ss_conf 99999999999875676314774231-----------77899999999998634466543343254279--8757989 No 27 >>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E* (A:1-99) Probab=32.34 E-value=33 Score=14.84 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=33.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCH----HHHHCCCCEEEEEE Q ss_conf 899999999888523874516999970345888997697----79852991699993 Q gi|254780953|r 131 QERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTK----VGRQNNQRIEIQIF 183 (190) Q Consensus 131 ~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~----~~ra~NRRVei~i~ 183 (190) ..|...|.+.|...|+..--...+.|||........... ...-.-+++||++- T Consensus 12 p~k~~~v~~aL~~~Gv~g~Tv~~v~G~G~~~g~~~~~~~~~~~~~~~~kv~ieivv~ 68 (99) T 2j9c_A 12 PEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVK 68 (99) T ss_dssp GGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEE T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCEEEECCCCEEEEEEEEC T ss_conf 889999999999689971999975734888982313335202502075699999988 No 28 >>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A (A:1-123,A:293-354) Probab=31.76 E-value=33 Score=14.78 Aligned_cols=25 Identities=4% Similarity=-0.029 Sum_probs=15.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 8999999999997514788765444 Q gi|254780953|r 4 ELGLSMFIMTTISGCGLASREKKKV 28 (190) Q Consensus 4 ~l~l~~~~~~~l~g~~~~~~~~~~~ 28 (190) .+.++++++++++||+......... T Consensus 12 ~~~~~~~~~~~lagC~~~~~~~~~~ 36 (185) T 3k6v_A 12 DYDIPTTENLYFQGAMADNQPEPGN 36 (185) T ss_dssp ------------------------- T ss_pred CCCCHHHHHHHHHHEECCCCCCCCC T ss_conf 4652426666643101258899998 No 29 >>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} (A:1-97) Probab=31.32 E-value=34 Score=14.74 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=25.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC Q ss_conf 8999999998885238745169999703458889 Q gi|254780953|r 131 QERADVIKSYLIQRGVSSNRFISVRGFAYKYPID 164 (190) Q Consensus 131 ~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~ 164 (190) ..|...|.+.|...|+..--.-.+.|||..+... T Consensus 10 p~~~~~v~~aL~~~Gv~g~Tv~~V~G~G~~~g~~ 43 (97) T 1hwu_A 10 PFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHT 43 (97) T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEEC------ T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC T ss_conf 8999999999997799749999704267667742 No 30 >>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} (A:1-143,A:308-349) Probab=28.35 E-value=21 Score=15.94 Aligned_cols=26 Identities=4% Similarity=-0.019 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 78999999999997514788765444 Q gi|254780953|r 3 KELGLSMFIMTTISGCGLASREKKKV 28 (190) Q Consensus 3 k~l~l~~~~~~~l~g~~~~~~~~~~~ 28 (190) +.+.++++++++++||+......... T Consensus 8 ~~~~~~l~~al~LagCgg~~~~~~~~ 33 (185) T 2w7y_A 8 HHHSSGLVPRGSHXASGTSKDASGGS 33 (185) T ss_dssp -------------------------- T ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 20577788612774467889888888 No 31 >>2gw8_A PII signal transduction protein; transcriptional regulation, structural genomics, oxford protein production facility, OPPF; 1.85A {Neisseria meningitidis MC58} (A:) Probab=25.55 E-value=43 Score=14.15 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=22.2 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC Q ss_conf 899999999888523874516999970345888 Q gi|254780953|r 131 QERADVIKSYLIQRGVSSNRFISVRGFAYKYPI 163 (190) Q Consensus 131 ~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~ 163 (190) ..|+..|.+.|..-|+..--...+.|+|...-. T Consensus 12 p~k~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~ 44 (114) T 2gw8_A 12 PFKLDDVREALTEIGITGMTVSEVKGFGRQKGH 44 (114) T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECC---- T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC T ss_conf 999999999999789971999963421366686 No 32 >>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} (A:129-256) Probab=23.20 E-value=48 Score=13.89 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=41.7 Q ss_pred CHHHHHHHHHHHHHHHH-CCCCEEEEEEECC----C---------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 99999999999999985-8994899998037----7---------87200111225899999999888523874516999 Q gi|254780953|r 89 EKKFLPMLQLIATILNK-FPSTVIAIQSHTD----S---------IGTLKNNLLISQERADVIKSYLIQRGVSSNRFISV 154 (190) Q Consensus 89 ~~~~~~~L~~ia~~l~~-~~~~~i~I~GHTD----~---------~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v 154 (190) ..+.....+-|-..++. .|+..|.|-|--- . .+.......| -..+...|.+.|.....+... T Consensus 21 R~Ev~~i~~~v~~~~~~~~p~~~v~i~GsyRRGk~~sgDvDiLithp~~~~~~~l----l~~vv~~L~~~g~i~~~l~~~ 96 (128) T 2bcq_A 21 REEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGI----FSRLLDSLRQEGFLTDDLVSQ 96 (128) T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEECHHHHTTCSEESSEEEEEECTTSSTTTTC----HHHHHHHHHHTTCEEEEEECC T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHH----HHHHHHHHHHCCCEEEEEEEE T ss_conf 9988988899999998469974699623111313301440045534770778899----999999998707524455542 Q ss_pred -------EEECCCCCCCCCCCHHHHHCCCCEEEEEEC Q ss_conf -------970345888997697798529916999930 Q gi|254780953|r 155 -------RGFAYKYPIDTNDTKVGRQNNQRIEIQIFP 184 (190) Q Consensus 155 -------~g~G~~~p~~~n~~~~~ra~NRRVei~i~~ 184 (190) +.+|-.+ .|+.+ .+-|||+|.+.| T Consensus 97 ~~~~~~~K~~gi~~--lp~~~----~~~RRvDi~~~P 127 (128) T 2bcq_A 97 EENGQQQKYLGVCR--LPGPG----RRHRRLDIIVVP 127 (128) T ss_dssp TTSTTCCEEEEEEC--CSSTT----CCCEEEEEEECC T ss_pred CCCCCCEEEEEEEE--CCCCC----CCCCEEEEEECC T ss_conf 14577436898676--47788----767346888538 No 33 >>1tia_A Lipase; hydrolase(carboxylic esterase); 2.10A {Penicillium camemberti} (A:) Probab=20.19 E-value=56 Score=13.54 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=35.9 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC Q ss_conf 999999999998589948999980377872001112258999999998885238745169999703458889976 Q gi|254780953|r 93 LPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTND 167 (190) Q Consensus 93 ~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~ 167 (190) ...++.|-..++++|+.+|.|.||. |+-.=|.-..-+|...+..+ +.+..||. |..-|. T Consensus 121 ~~i~~~i~~~~~~~~~~~i~vTGHS-----------LGGAiA~L~a~~l~~~~~~~---~~~~tfG~--PrvGn~ 179 (279) T 1tia_A 121 DDIIKELKEVVAQNPNYELVVVGHS-----------LGAAVATLAATDLRGKGYPS---AKLYAYAS--PRVGNA 179 (279) T ss_pred HHHHHHHHHHHHHCCCCEEEEECCC-----------HHHHHHHHHHHHHHHCCCCC---CEEEEECC--CCCCCH T ss_conf 9999999999976899359985251-----------78999999999998638985---21798468--542789 No 34 >>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} (A:) Probab=20.15 E-value=51 Score=13.73 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 999999888523874516999970 Q gi|254780953|r 134 ADVIKSYLIQRGVSSNRFISVRGF 157 (190) Q Consensus 134 A~~V~~~L~~~g~~~~r~i~v~g~ 157 (190) ...|+++|+..|..+.+.|.+.|| T Consensus 103 ~~~i~~~L~~~g~~~~~~I~vhg~ 126 (126) T 2if1_A 103 RKNICQFLVEIGLAKDDQLKVHGF 126 (126) T ss_dssp HHHHHHHHHHHTSSCTTTEECCCC T ss_pred HHHHHHHHHHCCCCCCCCEEECCC T ss_conf 999999999839997044884679 Done!