Query gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 190
No_of_seqs 126 out of 7161
Neff 9.4
Searched_HMMs 33803
Date Wed Jun 1 19:30:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780953.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2k1s_A Inner membrane lipopro 100.0 5.5E-34 1.6E-38 209.2 16.2 142 46-188 2-144 (149)
2 >3ldt_A Outer membrane protein 100.0 1.4E-32 4.2E-37 201.3 13.2 137 50-187 26-163 (169)
3 >3khn_A MOTB protein, putative 100.0 3.8E-32 1.1E-36 198.9 15.3 143 46-189 19-167 (174)
4 >2hqs_H Peptidoglycan-associat 100.0 2.5E-30 7.5E-35 188.7 10.3 116 74-190 2-118 (118)
5 >1r1m_A Outer membrane protein 100.0 9.4E-31 2.8E-35 191.1 6.3 120 67-187 4-124 (164)
6 >2aiz_P Outer membrane protein 100.0 2.4E-30 7E-35 188.9 8.2 111 70-181 22-133 (134)
7 >2zov_A Chemotaxis protein MOT 100.0 2.6E-29 7.6E-34 183.1 10.7 122 62-187 52-183 (210)
8 >2zf8_A MOTY, component of sod 100.0 1.8E-29 5.2E-34 184.0 8.2 111 76-187 6-118 (124)
9 >2zvy_A Chemotaxis protein MOT 100.0 1.8E-28 5.3E-33 178.3 12.6 124 62-188 43-173 (183)
10 >3cyp_B Chemotaxis protein MOT 100.0 1.5E-28 4.5E-33 178.8 12.1 109 78-187 3-118 (138)
11 >2fmp_A DNA polymerase beta; n 56.1 4.7 0.00014 19.5 1.2 97 87-185 31-143 (143)
12 >3dfe_A Putative PII-like sign 52.6 8.8 0.00026 18.0 2.1 55 131-185 15-70 (111)
13 >1rbl_M Ribulose 1,5 bisphosph 47.4 18 0.00055 16.2 3.7 29 91-119 66-94 (109)
14 >1v97_A XD, xanthine dehydroge 42.9 12 0.00034 17.3 1.5 24 95-119 19-42 (62)
15 >1bxn_I Rubisco, protein (ribu 42.3 22 0.00066 15.8 3.7 31 90-120 59-89 (105)
16 >1svd_M Ribulose bisphosphate 42.0 23 0.00067 15.7 3.8 28 91-118 68-95 (110)
17 >1p99_A Hypothetical protein P 41.7 12 0.00035 17.3 1.4 20 125-144 140-159 (183)
18 >3iib_A Peptidase M28; YP_9267 41.4 23 0.00068 15.7 5.8 55 107-161 86-142 (282)
19 >1gk8_I Ribulose bisphosphate 39.9 24 0.00072 15.5 3.7 30 90-119 84-113 (140)
20 >2vx5_A Cellvibrio japonicus m 39.9 12 0.00036 17.2 1.2 27 90-116 214-241 (396)
21 >1bwv_S Rubisco, protein (ribu 39.5 25 0.00073 15.5 3.7 29 91-119 60-88 (105)
22 >2cz4_A Hypothetical protein T 38.6 26 0.00076 15.4 3.6 32 131-162 34-65 (119)
23 >2eg2_A Nitrogen regulatory pr 35.7 29 0.00084 15.2 4.3 33 131-163 10-42 (97)
24 >2f2f_C CDT C, cytolethal dist 34.6 9.5 0.00028 17.8 0.0 21 2-23 1-21 (186)
25 >3c9h_A ABC transporter, subst 33.5 22 0.00066 15.8 1.7 25 1-25 1-28 (355)
26 >1tgl_A Triacyl-glycerol acylh 33.0 32 0.00094 14.9 6.5 64 92-168 119-183 (269)
27 >2j9c_A GLNK1, hypothetical ni 32.3 33 0.00096 14.8 2.5 53 131-183 12-68 (99)
28 >3k6v_A Solute-binding protein 31.8 33 0.00099 14.8 3.6 25 4-28 12-36 (185)
29 >1hwu_A PII protein; herbaspir 31.3 34 0.001 14.7 4.0 34 131-164 10-43 (97)
30 >2w7y_A FCSSBP, probable sugar 28.3 21 0.00061 15.9 0.9 26 3-28 8-33 (185)
31 >2gw8_A PII signal transductio 25.5 43 0.0013 14.2 4.6 33 131-163 12-44 (114)
32 >2bcq_A DNA polymerase lambda; 23.2 48 0.0014 13.9 3.4 86 89-184 21-127 (128)
33 >1tia_A Lipase; hydrolase(carb 20.2 56 0.0016 13.5 7.2 59 93-167 121-179 (279)
34 >2if1_A EIF1, SUI1; translatio 20.1 51 0.0015 13.7 1.6 24 134-157 103-126 (126)
No 1
>>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12} (A:)
Probab=100.00 E-value=5.5e-34 Score=209.19 Aligned_cols=142 Identities=33% Similarity=0.494 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH
Q ss_conf 37888999999720178358860875899852211128-81310999999999999999858994899998037787200
Q gi|254780953|r 46 SLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLK 124 (190)
Q Consensus 46 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~ 124 (190)
+++.+...+...+..+++.+...++...+.++..++|+ +++.|++++++.|+.++.+|+.+|+..|.|+||||..|++.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~~~~i~~~~~v~F~~~s~~l~~~~~~~L~~ia~~L~~~p~~~i~I~Ghtd~~g~~~ 81 (149)
T 2k1s_A 2 YMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHD 81 (149)
T ss_dssp CSHHHHHHHHHHTTTTSCEEEEETTEEEEEEEHHHHBSSSSSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEECCCTTCHH
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 78899999999871599779997999999847860665997336989999999887777318875201022413544543
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHH
Q ss_conf 1112258999999998885238745169999703458889976977985299169999301011
Q gi|254780953|r 125 NNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNI 188 (190)
Q Consensus 125 ~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~ 188 (190)
+||.||.+||.+|++||...|+++.| |.+.|||+.+|+++|+++++|++||||||+|.++...
T Consensus 82 ~N~~LS~~RA~aV~~~l~~~gv~~~r-i~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~~~ 144 (149)
T 2k1s_A 82 LNMRLSQQRADSVASALITQGVDASR-IRTQGLGPANPIASNSTAEGKAQNRRVEITLSPLLEH 144 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGG-EEEEECTTTCCSSCSSSHHHHHHHSEEEEEEEECSSC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCC-CEEEEECCCCCCCCCCCHHHHHHCCCEEEEEEECCHH
T ss_conf 32017889999999999981997663-3589965657668993977897449699999615140
No 2
>>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila} (A:)
Probab=100.00 E-value=1.4e-32 Score=201.29 Aligned_cols=137 Identities=28% Similarity=0.433 Sum_probs=127.2
Q ss_pred HHHHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH
Q ss_conf 8999999720178358860875899852211128-813109999999999999998589948999980377872001112
Q gi|254780953|r 50 AEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLL 128 (190)
Q Consensus 50 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~ 128 (190)
....+.......++.+...+..+.+.++..++|. +++.|+++++..|+.++.+|+.+|+..|.|+||||..|+..|||.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~F~~~s~~l~~~~~~~L~~la~~l~~~p~~~i~I~Ghtd~~g~~~~n~~ 105 (169)
T 3ldt_A 26 SKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFXFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRK 105 (169)
T ss_dssp HHHHHHHHHHHTTCEEEEETTEEEEEEETTTCCC-CCHHHHHHHCHHHHHHHHHHTTCTTSCEEEEEECTTSCCC--CHH
T ss_pred HHHHHHHHHHCCCCEEEEECCEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH
T ss_conf 99999999854995799969989999068825708963269889999999999999789957999997289897667577
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH
Q ss_conf 25899999999888523874516999970345888997697798529916999930101
Q gi|254780953|r 129 ISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190)
Q Consensus 129 LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190)
||.+||.+|+.||+..|+.+.| |.+.|||+.+|+++|+++++|++||||||+|+++..
T Consensus 106 LS~~RA~aV~~~L~~~Gi~~~r-i~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~~ 163 (169)
T 3ldt_A 106 LSQAQAETXXTFLWANGIAAKR-LKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSEG 163 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTT-EEECCTTCTTSCCCTTTSCGGGGTSEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHCCCCHHH-EEEEEECCCCCCCCCCCHHHHHHCCCEEEEEEECCC
T ss_conf 9999999999999985999899-899997566767999297899854988999996898
No 3
>>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str} (A:)
Probab=100.00 E-value=3.8e-32 Score=198.88 Aligned_cols=143 Identities=20% Similarity=0.256 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC---
Q ss_conf 37888999999720178358860875899852211128-81310999999999999999858994899998037787---
Q gi|254780953|r 46 SLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIG--- 121 (190)
Q Consensus 46 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g--- 121 (190)
..+.....+........+.+...++.+.+.++..++|+ +++.|+++++..|..++.+|+.+|...|.|+||||+.|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~F~~gs~~l~~~~~~~L~~ia~~l~~~~~~~i~I~GhtD~~g~~~ 98 (174)
T 3khn_A 19 TYNEXRTYFTVNGVEGVIGAVFDEGVITLRVPSEVLFAPGAVELAPGADRVLATLKDLFIRRREQNINIKGFTDDVQPSA 98 (174)
T ss_dssp HHHHHHHHHHHTTCTTTCEEEEETTEEEEEEEHHHHBCTTCCSBCTTHHHHHHHHHHHHHHTTTCEEEEEEECCSCCCCT
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC
T ss_conf 99999999986146775699983998999946873246997402988999999998754038742999974036766655
Q ss_pred --CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHHC
Q ss_conf --20011122589999999988852387451699997034588899769779852991699993010113
Q gi|254780953|r 122 --TLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNIK 189 (190)
Q Consensus 122 --~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~k 189 (190)
++.+||.||++||.+|+.||...|+.+.| |.+.|||+++|+++|+++++|++||||||.|.++...+
T Consensus 99 ~~~~~~n~~LS~~RA~~V~~~l~~~gi~~~r-i~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~~~~ 167 (174)
T 3khn_A 99 NARFKDNWEVSALRSVNVLRYFLGAGIEPAR-LTATGLGELDPLFPNTSDENRARNRRVEFVLERRVVRE 167 (174)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHHHTTCCGGG-EEEEEEETSSCSSCSSSHHHHHHHSEEEEEEEC----C
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCCCCCCCCHHHHHHCCCEEEEEEECCCCC
T ss_conf 6643201368899999999999871478666-79998424577799939789987396899998545788
No 4
>>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} (H:)
Probab=99.97 E-value=2.5e-30 Score=188.71 Aligned_cols=116 Identities=23% Similarity=0.342 Sum_probs=109.1
Q ss_pred EEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 9852211128-813109999999999999998589948999980377872001112258999999998885238745169
Q gi|254780953|r 74 CYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFI 152 (190)
Q Consensus 74 ~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i 152 (190)
+.++..++|+ +++.|+++++..|++++..|+.+|+..|.|+||||..|++.+||.||.+||.+|+.||...|+.+.| +
T Consensus 2 i~l~~~v~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Ghtd~~g~~~~n~~LS~~RA~aV~~~l~~~g~~~~r-i 80 (118)
T 2hqs_H 2 LQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQ-I 80 (118)
T ss_dssp --CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGG-E
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-E
T ss_conf 667999994099864598899999999999976999489998423323210366658899887689999975984340-6
Q ss_pred EEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHHCC
Q ss_conf 99970345888997697798529916999930101139
Q gi|254780953|r 153 SVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNIKK 190 (190)
Q Consensus 153 ~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~k~ 190 (190)
.+.|||+.+|++++++++++++||||||.|.++...++
T Consensus 81 ~~~g~G~~~p~~~~~~~~~~~~nRRVei~i~~~~~~~~ 118 (118)
T 2hqs_H 81 SIVSYGKEKPAVLGHDEAAYSKNRRAVLVYLEHHHHHH 118 (118)
T ss_dssp EEEECTTSSCSSCCSSHHHHHHHSEEEEECC-------
T ss_pred EEEECCCCCCCCCCCCHHHHHHCCCEEEEEEEEECCCC
T ss_conf 99982553778889197899764979999998506779
No 5
>>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} (A:)
Probab=99.96 E-value=9.4e-31 Score=191.12 Aligned_cols=120 Identities=21% Similarity=0.158 Sum_probs=111.0
Q ss_pred EECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 60875899852211128-81310999999999999999858994899998037787200111225899999999888523
Q gi|254780953|r 67 RIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRG 145 (190)
Q Consensus 67 ~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g 145 (190)
..++...+.+...++|. +++.|+++++..|+.++.+|+.+|+..|.|+||||..|++.|||.||.+||.+|+.||+..|
T Consensus 4 ~~~~~~~i~l~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Ghtd~~g~~~~N~~LS~~RA~aV~~~L~~~g 83 (164)
T 1r1m_A 4 PQYVDETISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNG 83 (164)
T ss_dssp CCEEEEEEEEEHHHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEECCEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 85026079977733551897226989999999999999778981899999738989855707999999999999999859
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH
Q ss_conf 874516999970345888997697798529916999930101
Q gi|254780953|r 146 VSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190)
Q Consensus 146 ~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190)
+++.| |.+.|||+.+|+++|++++++++||||||.+.+...
T Consensus 84 i~~~r-i~~~g~G~~~P~~~~~~~~~~~~NRRVei~~~~~~~ 124 (164)
T 1r1m_A 84 VPVSR-ISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREA 124 (164)
T ss_dssp CCGGG-EEEEECTTTTCCCHHHHHHHHHTCCSSCCSSHHHHH
T ss_pred CCHHH-EEEEEECCCCCCCCCCCHHHHHHCCCCCHHHCCHHH
T ss_conf 99899-899987676888989797898531441000000355
No 6
>>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} (P:)
Probab=99.96 E-value=2.4e-30 Score=188.87 Aligned_cols=111 Identities=22% Similarity=0.316 Sum_probs=102.8
Q ss_pred CEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 75899852211128-81310999999999999999858994899998037787200111225899999999888523874
Q gi|254780953|r 70 DMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSS 148 (190)
Q Consensus 70 ~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~ 148 (190)
....+.++..++|+ +++.|+++++..|+.++..|+.+|+..|.|+||||..|++.|||.||++||.+|++||+..|+.+
T Consensus 22 ~~~~~~~~~~i~F~~~s~~l~~~~~~~L~~~a~~l~~~p~~~i~I~Ghtd~~g~~~~N~~LS~~RA~aV~~~l~~~g~~~ 101 (134)
T 2aiz_P 22 VADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDA 101 (134)
T ss_dssp HHHHTTTSCEEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99996058808805998004988999999999999869984899973124343321012578999999999999708753
Q ss_pred CCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 516999970345888997697798529916999
Q gi|254780953|r 149 NRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQ 181 (190)
Q Consensus 149 ~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~ 181 (190)
.| |.+.|||+.+|+++|+++++|++||||||+
T Consensus 102 ~r-i~~~g~G~~~p~~~~~~~~~~~~NRRVei~ 133 (134)
T 2aiz_P 102 GK-LGTVSYGEEKPAVLGHDEAAYSKNRRAVLA 133 (134)
T ss_dssp GG-EEEEECTTTSCSSCSCSHHHHHHHSEEEEE
T ss_pred CE-EEEEECCCCCCCCCCCCHHHHHCCCCEEEE
T ss_conf 20-345763443778889197787533989995
No 7
>>2zov_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium} (A:)
Probab=99.96 E-value=2.6e-29 Score=183.09 Aligned_cols=122 Identities=19% Similarity=0.243 Sum_probs=102.2
Q ss_pred CCEEEEECCEEEE---EECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC-----CCHHHHHHHHHH
Q ss_conf 8358860875899---852211128-8131099999999999999985899489999803778-----720011122589
Q gi|254780953|r 62 GIVVSRIGDMITC---YIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSI-----GTLKNNLLISQE 132 (190)
Q Consensus 62 ~~~~~~~~~~~~~---~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~-----g~~~~N~~LS~~ 132 (190)
...+........+ .++..++|. +++.|+++++..|+.|+.+|+.+|. .|.|+||||+. |++.|||.||++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~i~F~~~sa~l~~~~~~~l~~ia~~l~~~~~-~i~I~GhtD~~~~~~~G~~~~N~~LS~~ 130 (210)
T 2zov_A 52 HLKIDLVQEGLRIQIIDSQNRPXFKTGSAEVEPYXRDILRAIAPVLNGIPN-RISLAGHTDDFPYANGEKGYSNWELSAD 130 (210)
T ss_dssp GEEEEEETTEEEEEEECCSSSCSBCTTSCCBCHHHHHHHHHHHHHHTTSCC-CEEEEEEEECSCCCSSCSSCCHHHHHHH
T ss_pred CCEEEECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 715998179529999848998486999744698799999999999983386-6999985487764457764205789999
Q ss_pred HHHHHHHHHHHH-CCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH
Q ss_conf 999999988852-3874516999970345888997697798529916999930101
Q gi|254780953|r 133 RADVIKSYLIQR-GVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190)
Q Consensus 133 RA~~V~~~L~~~-g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190)
||.+|+.||+.. |+.+.| |.+.|||+.+|+++|+ ++|++||||||+|++...
T Consensus 131 RA~aV~~~L~~~~gi~~~r-i~~~g~G~~~p~~~n~--~~~~~NRRVeI~i~~~~~ 183 (210)
T 2zov_A 131 RANASRRELVAGGLDNGKV-LRVVGXAATXRLSDRG--PDDAINRRISLLVLNKQA 183 (210)
T ss_dssp HHHHHHHHHHHTTCCTTCE-EEEEEECCC-----------CCCEEEEEEEEECHHH
T ss_pred HHHHHHHHHHHCCCCCCCE-EEEEEECCCCCCCCCC--CCHHHCCCEEEEEECCHH
T ss_conf 9999999999859980358-9999868887899899--645872988999978477
No 8
>>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} (A:155-278)
Probab=99.96 E-value=1.8e-29 Score=183.98 Aligned_cols=111 Identities=22% Similarity=0.336 Sum_probs=103.6
Q ss_pred ECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 52211128-81310999999999999999858994-89999803778720011122589999999988852387451699
Q gi|254780953|r 76 IPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPST-VIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFIS 153 (190)
Q Consensus 76 ~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~-~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~ 153 (190)
++..++|+ +++.|+++++..|++++.+|+.+|+. .|.|+||||+.|+..|||.||.+||.+|+.||+..|+++.| |.
T Consensus 6 ~~~~v~F~~~s~~L~~~~~~~L~~ia~~L~~~~~~~~I~I~Ghtd~~g~~~~n~~LS~~RA~~V~~~l~~~Gi~~~r-i~ 84 (124)
T 2zf8_A 6 AFTILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGLPEDR-IQ 84 (124)
T ss_dssp EEEECBSSSSSSSBCHHHHHHHHHHHHHHTTCCSCCEEEEEEC-------CCCHHHHHHHHHHHHHHHHHHSCCTTS-EE
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH-EE
T ss_conf 15289938997116999999999999999868996589999874899987887999999999999999985999799-89
Q ss_pred EEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH
Q ss_conf 9970345888997697798529916999930101
Q gi|254780953|r 154 VRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190)
Q Consensus 154 v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190)
+.|||+.+|+++|.+++++++||||||.|++...
T Consensus 85 ~~g~G~~~p~~~~~~~~~~~~NRRVeI~i~~~~~ 118 (124)
T 2zf8_A 85 VQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQV 118 (124)
T ss_dssp CCEEC------------------CEEEECCCCC-
T ss_pred EEEECCCCCCCCCCCHHHHHHCCCEEEEEEEEEE
T ss_conf 9997565777999498899734989999986797
No 9
>>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A (A:)
Probab=99.96 E-value=1.8e-28 Score=178.35 Aligned_cols=124 Identities=22% Similarity=0.289 Sum_probs=101.8
Q ss_pred CCEEEEECCEEEE-EECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC-----CCHHHHHHHHHHHH
Q ss_conf 8358860875899-852211128-8131099999999999999985899489999803778-----72001112258999
Q gi|254780953|r 62 GIVVSRIGDMITC-YIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSI-----GTLKNNLLISQERA 134 (190)
Q Consensus 62 ~~~~~~~~~~~~~-~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~-----g~~~~N~~LS~~RA 134 (190)
.+.+...+....+ .++..++|+ +++.|+++++..|+.++..|+.+|. .|.|+||||+. |++.|||.||.+||
T Consensus 43 ~~~~~~~~~~~~~~~~~~~i~F~~~sa~l~~~~~~~l~~la~~l~~~~~-~i~I~Ghtd~~~~~~~g~~~~N~~LS~~RA 121 (183)
T 2zvy_A 43 KIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPN-RISLAGHTDDFPYANGEKGYSNWELSADRA 121 (183)
T ss_dssp EEEEETTEEEEEEECCSSSCSBCTTCCSBCHHHHHHHHHHHHHHTTSCC-CEEEEEECCSSCTTCSTTSSCHHHHHHHHH
T ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 5998078319999867888686899840581677999999999971476-089997236667555775311689999999
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHH
Q ss_conf 999998885238745169999703458889976977985299169999301011
Q gi|254780953|r 135 DVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNI 188 (190)
Q Consensus 135 ~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~ 188 (190)
.+|++||+..+..+.+++.+.|||+.+|+.+|. +++++||||||.|+++...
T Consensus 122 ~aV~~~L~~~~gi~~~ri~~~g~G~~~p~~~n~--~~~~~NRRVei~i~~~~~~ 173 (183)
T 2zvy_A 122 NASRRELVAGGLDNGKVLRVVGMAATMRLSDRG--PDDAINRRISLLVLNKQAE 173 (183)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEECTTTTCSSCSS--TTGGGGSEEEEEEECHHHH
T ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC--CCHHHHCCEEEEEECCHHH
T ss_conf 999999987058987889999967787789899--6337709989999896789
No 10
>>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* (B:)
Probab=99.96 E-value=1.5e-28 Score=178.77 Aligned_cols=109 Identities=27% Similarity=0.413 Sum_probs=100.1
Q ss_pred CCEECC-CHHH-CCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 211128-8131-099999999999999985899-489999803778----720011122589999999988852387451
Q gi|254780953|r 78 VHVSFV-SEVF-LEKKFLPMLQLIATILNKFPS-TVIAIQSHTDSI----GTLKNNLLISQERADVIKSYLIQRGVSSNR 150 (190)
Q Consensus 78 ~~~~f~-~~a~-l~~~~~~~L~~ia~~l~~~~~-~~i~I~GHTD~~----g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r 150 (190)
+.+||+ +++. |+++++..|++|+.+|+.+|+ ..|.|+||||+. |++.+||.||.+||.+|+.||+..|+++.|
T Consensus 3 ~~v~F~~~ss~~l~~~~~~~l~~ia~~l~~~~~~~~I~I~GhtD~~~~~~g~~~~N~~LS~~RA~~V~~~l~~~gi~~~r 82 (138)
T 3cyp_B 3 DPFTFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQ 82 (138)
T ss_dssp CCEECSSTTCCCCCHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCEECCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 86663899624339989999999999999689970899998608988777870779999999999999999985999565
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH
Q ss_conf 6999970345888997697798529916999930101
Q gi|254780953|r 151 FISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190)
Q Consensus 151 ~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190)
|.+.|||+.+|+++|+++++|++||||||.|.+...
T Consensus 83 -i~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~~ 118 (138)
T 3cyp_B 83 -LSFSSYGSTNPIAPNDSLENRMKNNRVEIFFSTDAN 118 (138)
T ss_dssp -EEEEECTTCSCSSCTTSHHHHHHHSEEEEEEEEEHH
T ss_pred -EEEEEECCCCCCCCCCCHHHHHHCCCEEEEEECCHH
T ss_conf -999984556767999397899724968999970827
No 11
>>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} (A:120-262)
Probab=56.08 E-value=4.7 Score=19.54 Aligned_cols=97 Identities=12% Similarity=0.208 Sum_probs=49.9
Q ss_pred HCCHHHHHHHHHHHHHHHHC-CCCEEEEEEEC----CCCCC---------HHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 10999999999999999858-99489999803----77872---------001112258999999998885238745169
Q gi|254780953|r 87 FLEKKFLPMLQLIATILNKF-PSTVIAIQSHT----DSIGT---------LKNNLLISQERADVIKSYLIQRGVSSNRFI 152 (190)
Q Consensus 87 ~l~~~~~~~L~~ia~~l~~~-~~~~i~I~GHT----D~~g~---------~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i 152 (190)
....++.+..+.|...|+.. +...+.+.|-. ...|. ...-...-..=...|..+|.+.+..... +
T Consensus 31 ipr~ea~~i~~~i~~~l~~~~~~~~v~~~GS~RRgket~gDiDili~~~~~~~~~~~~~~~l~~v~~~l~~~~~i~~~-l 109 (143)
T 2fmp_A 31 IPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDT-L 109 (143)
T ss_dssp EEHHHHHHHHHHHHHHHHHHCTTCEEEECHHHHTTCSEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEE-E
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE-E
T ss_conf 349999987899999998649850797035222244556775668855875420110267999999998647876431-0
Q ss_pred EEEEECCCCCCCCCCCHHHHH--CCCCEEEEEECC
Q ss_conf 999703458889976977985--299169999301
Q gi|254780953|r 153 SVRGFAYKYPIDTNDTKVGRQ--NNQRIEIQIFPR 185 (190)
Q Consensus 153 ~v~g~G~~~p~~~n~~~~~ra--~NRRVei~i~~~ 185 (190)
..|.....-+.......... .-|||+|.+.|+
T Consensus 110 -~~g~~k~~~~~~~~~~~~~~~~~~rRVDl~~vP~ 143 (143)
T 2fmp_A 110 -SKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPK 143 (143)
T ss_dssp -EECSSEEEEEECCCCCTTCCCCCCEEEEEEECCG
T ss_pred -CCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCH
T ss_conf -3787158999823664554567855889998168
No 12
>>3dfe_A Putative PII-like signaling protein; YP_323533.1, structural genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} (A:)
Probab=52.64 E-value=8.8 Score=18.02 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCH-HHHHCCCCEEEEEECC
Q ss_conf 899999999888523874516999970345888997697-7985299169999301
Q gi|254780953|r 131 QERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTK-VGRQNNQRIEIQIFPR 185 (190)
Q Consensus 131 ~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~-~~ra~NRRVei~i~~~ 185 (190)
..|...|.+.|...|+..--...+.|+|..+........ .....|.|+|+++.+.
T Consensus 15 ~~~~~~v~~aL~~~Gv~G~Tv~~v~G~G~~~g~~~~~~~~~~~~~~v~ie~vV~~d 70 (111)
T 3dfe_A 15 KVLLKKVAKIIEEAGATGYTVVDTGGKGSRNVRSTGKPNTSDTDSNVKFEVLTENR 70 (111)
T ss_dssp GGGHHHHHHHHHHHTCSCCEEEEEBC------------------CEEEEEEEESSH
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCH
T ss_conf 99999999999857998879995472388886266613201246836999998574
No 13
>>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase (small chain); lyase(carbon-carbon); HET: CAP; 2.20A {Synechococcus elongatus pcc 6301} (M:)
Probab=47.43 E-value=18 Score=16.22 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 99999999999998589948999980377
Q gi|254780953|r 91 KFLPMLQLIATILNKFPSTVIAIQSHTDS 119 (190)
Q Consensus 91 ~~~~~L~~ia~~l~~~~~~~i~I~GHTD~ 119 (190)
+...+|.+|...++.||+..|+|.|+-..
T Consensus 66 d~~~Vl~ele~c~~~~p~~YVRliG~D~~ 94 (109)
T 1rbl_M 66 APQQVLDEVRECRSEYGDCYIRVAGFDNI 94 (109)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEEEEETT
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 67899999999999799766989999688
No 14
>>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} (A:223-284)
Probab=42.90 E-value=12 Score=17.35 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 9999999998589948999980377
Q gi|254780953|r 95 MLQLIATILNKFPSTVIAIQSHTDS 119 (190)
Q Consensus 95 ~L~~ia~~l~~~~~~~i~I~GHTD~ 119 (190)
.++++.+++.++|+..| |.|.||=
T Consensus 19 tl~el~~ll~~~P~A~i-iaGgTdl 42 (62)
T 1v97_A 19 TLKELLDLKAQHPEAKL-VVGNTEI 42 (62)
T ss_dssp SHHHHHHHHHHCTTCEE-CSSCTTH
T ss_pred CHHHHHHHHHHCCCCEE-EEECCHH
T ss_conf 79999999987899879-9974647
No 15
>>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small chain); lyase (carbon-carbon); 2.70A {Ralstonia eutropha} (I:1-105)
Probab=42.27 E-value=22 Score=15.75 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 9999999999999985899489999803778
Q gi|254780953|r 90 KKFLPMLQLIATILNKFPSTVIAIQSHTDSI 120 (190)
Q Consensus 90 ~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~ 120 (190)
.+..++|.+|...++.||+..|++.|+-...
T Consensus 59 ~d~~~Vl~eie~c~~~~p~~YVRliG~D~~~ 89 (105)
T 1bxn_I 59 RDAAGILMEINNARNTFPNHYIRVTAFDSTH 89 (105)
T ss_dssp CCHHHHHHHHHHHHHHCSSSEEEEEEECTTT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 8999999999999998998769999994887
No 16
>>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} (M:)
Probab=41.99 E-value=23 Score=15.73 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 9999999999999858994899998037
Q gi|254780953|r 91 KFLPMLQLIATILNKFPSTVIAIQSHTD 118 (190)
Q Consensus 91 ~~~~~L~~ia~~l~~~~~~~i~I~GHTD 118 (190)
+..++|.+|...++.||+..|++.|+-.
T Consensus 68 ~~~~Vl~ele~c~~~~p~~YVRlig~D~ 95 (110)
T 1svd_M 68 NVDNVLAEIEACRSAYPTHQVKLVAYDN 95 (110)
T ss_dssp CHHHHHHHHHHHHHHSTTSEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 7889999999999979977699999717
No 17
>>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:1-119,A:232-295)
Probab=41.69 E-value=12 Score=17.28 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 11122589999999988852
Q gi|254780953|r 125 NNLLISQERADVIKSYLIQR 144 (190)
Q Consensus 125 ~N~~LS~~RA~~V~~~L~~~ 144 (190)
+-.-.-.-....|+.|+.+.
T Consensus 140 ~~~l~~~~~s~~v~~~i~~~ 159 (183)
T 1p99_A 140 YAKIVELYHSKEAQKALQED 159 (183)
T ss_dssp HHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHC
T ss_conf 99999997799999999973
No 18
>>3iib_A Peptidase M28; YP_926796.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} (A:1-69,A:232-444)
Probab=41.39 E-value=23 Score=15.67 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=27.5
Q ss_pred CCCEEEEEEECCCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 99489999803778720--01112258999999998885238745169999703458
Q gi|254780953|r 107 PSTVIAIQSHTDSIGTL--KNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKY 161 (190)
Q Consensus 107 ~~~~i~I~GHTD~~g~~--~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~ 161 (190)
|+-.|.|.||.|+.+.- +.-..-+..=.-.++++|...+..+.|-|++..++..+
T Consensus 86 ~~e~Vii~aHlDS~~~g~GA~Dd~sGva~~leaar~L~~~~~~p~rtI~fv~~~~EE 142 (282)
T 3iib_A 86 ADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEE 142 (282)
T ss_dssp EEEEEEEEEECCCCSSSCCTTTTHHHHHHHHHHHHHHHTSSSCCSEEEEEEEESCGG
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 985899950124554558966761458999999999976325766652699963664
No 19
>>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} (I:)
Probab=39.94 E-value=24 Score=15.54 Aligned_cols=30 Identities=13% Similarity=0.344 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 999999999999998589948999980377
Q gi|254780953|r 90 KKFLPMLQLIATILNKFPSTVIAIQSHTDS 119 (190)
Q Consensus 90 ~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~ 119 (190)
.+...+|.+|...++.||+..|+|.|+=..
T Consensus 84 ~d~~~Vl~ele~C~~~~p~~YVRliG~D~~ 113 (140)
T 1gk8_I 84 RDPMQVLREIVACTKAFPDAYVRLVAFDNQ 113 (140)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 898999999999987688747999886165
No 20
>>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:)
Probab=39.87 E-value=12 Score=17.25 Aligned_cols=27 Identities=4% Similarity=0.114 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHC-CCCEEEEEEE
Q ss_conf 99999999999999858-9948999980
Q gi|254780953|r 90 KKFLPMLQLIATILNKF-PSTVIAIQSH 116 (190)
Q Consensus 90 ~~~~~~L~~ia~~l~~~-~~~~i~I~GH 116 (190)
.+....++.+++.+++. |+..|.+.|-
T Consensus 214 ~~y~~~~~~~~~~ir~~~p~~~i~~~~~ 241 (396)
T 2vx5_A 214 QDYIALWRFTVHYLRDEKKLRNLIYAYS 241 (396)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 9999999999999997368741899960
No 21
>>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation,complex (rubisco/reaction intermediate), high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} (S:1-105)
Probab=39.46 E-value=25 Score=15.50 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 99999999999998589948999980377
Q gi|254780953|r 91 KFLPMLQLIATILNKFPSTVIAIQSHTDS 119 (190)
Q Consensus 91 ~~~~~L~~ia~~l~~~~~~~i~I~GHTD~ 119 (190)
+...+|.+|...++.+|+..|++.|+-..
T Consensus 60 ~~~~Vl~eie~C~~~~p~~YVRliG~D~~ 88 (105)
T 1bwv_S 60 DPAAVLFEINACRKARSNFYIKVVGFSSV 88 (105)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 99999999999999798676889999776
No 22
>>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus HB8} (A:)
Probab=38.55 E-value=26 Score=15.42 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
Q ss_conf 89999999988852387451699997034588
Q gi|254780953|r 131 QERADVIKSYLIQRGVSSNRFISVRGFAYKYP 162 (190)
Q Consensus 131 ~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p 162 (190)
..+.+.|.+.|...|+..--...+.|+|...-
T Consensus 34 ~~~l~~V~~aL~~~Gv~G~Tv~~v~G~G~~~~ 65 (119)
T 2cz4_A 34 SLLEKRLVEEVKRLGAKGYTITPARGEGSRGI 65 (119)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCT
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
T ss_conf 88899999999987995379997489744687
No 23
>>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A (A:1-97)
Probab=35.73 E-value=29 Score=15.16 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 899999999888523874516999970345888
Q gi|254780953|r 131 QERADVIKSYLIQRGVSSNRFISVRGFAYKYPI 163 (190)
Q Consensus 131 ~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~ 163 (190)
..|...|.+.|...|+..--...+.|+|..+..
T Consensus 10 p~k~~~v~~aL~~~Gv~g~Tv~~V~G~G~~~~~ 42 (97)
T 2eg2_A 10 PFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGH 42 (97)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEC------
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
T ss_conf 999999999999689973999952612677775
No 24
>>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} (C:)
Probab=34.64 E-value=9.5 Score=17.82 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 4789999999999975147887
Q gi|254780953|r 2 IKELGLSMFIMTTISGCGLASR 23 (190)
Q Consensus 2 ~k~l~l~~~~~~~l~g~~~~~~ 23 (190)
|||+.+ +|+++++++|+..+.
T Consensus 1 MkK~~i-~f~~~~i~~~ss~~~ 21 (186)
T 2f2f_C 1 MKKYLL-SFLLSMILTLTSHAE 21 (186)
T ss_dssp ----------------------
T ss_pred CCHHHH-HHHHHHHHHCCCCCC
T ss_conf 931169-999999986114665
No 25
>>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:)
Probab=33.49 E-value=22 Score=15.75 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHH---HHHCCCCCCCC
Q ss_conf 94789999999999---97514788765
Q gi|254780953|r 1 MIKELGLSMFIMTT---ISGCGLASREK 25 (190)
Q Consensus 1 m~k~l~l~~~~~~~---l~g~~~~~~~~ 25 (190)
|+|++.++++++++ ++||+......
T Consensus 1 Mkk~~~~~~~~~~~~~~la~c~~~~~~~ 28 (355)
T 3c9h_A 1 MRICLFLCLCLCMASPALAQVAVFPALS 28 (355)
T ss_dssp ---------------CEEEEEEEECCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9369999999999999999987433335
No 26
>>1tgl_A Triacyl-glycerol acylhydrolase; hydrolase(carboxylic esterase); 1.90A {Rhizomucor miehei} (A:)
Probab=33.05 E-value=32 Score=14.91 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEECCCCCCCCCCC
Q ss_conf 9999999999998589948999980377872001112258999999998885238-7451699997034588899769
Q gi|254780953|r 92 FLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGV-SSNRFISVRGFAYKYPIDTNDT 168 (190)
Q Consensus 92 ~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~-~~~r~i~v~g~G~~~p~~~n~~ 168 (190)
....++.+...+.++|+..|.|.||. |.-.=|.-.+-+|..+.. .+.+.+.+..||. |..-|..
T Consensus 119 ~~~i~~~i~~~~~~~~~~~i~itGHS-----------LGGAlA~l~a~~l~~~~~~~~~~~i~~~tfG~--PrvGn~~ 183 (269)
T 1tgl_A 119 QNELVATVLDQFKQYPSYKVAVTGHS-----------LGGATALLCALDLYQREEGLSSSNLFLYTQGQ--PRVGNPA 183 (269)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCC-----------HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC--CCCCCHH
T ss_conf 99999999999875676314774231-----------77899999999998634466543343254279--8757989
No 27
>>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E* (A:1-99)
Probab=32.34 E-value=33 Score=14.84 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCH----HHHHCCCCEEEEEE
Q ss_conf 899999999888523874516999970345888997697----79852991699993
Q gi|254780953|r 131 QERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTK----VGRQNNQRIEIQIF 183 (190)
Q Consensus 131 ~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~----~~ra~NRRVei~i~ 183 (190)
..|...|.+.|...|+..--...+.|||........... ...-.-+++||++-
T Consensus 12 p~k~~~v~~aL~~~Gv~g~Tv~~v~G~G~~~g~~~~~~~~~~~~~~~~kv~ieivv~ 68 (99)
T 2j9c_A 12 PEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVK 68 (99)
T ss_dssp GGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCEEEECCCCEEEEEEEEC
T ss_conf 889999999999689971999975734888982313335202502075699999988
No 28
>>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A (A:1-123,A:293-354)
Probab=31.76 E-value=33 Score=14.78 Aligned_cols=25 Identities=4% Similarity=-0.029 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8999999999997514788765444
Q gi|254780953|r 4 ELGLSMFIMTTISGCGLASREKKKV 28 (190)
Q Consensus 4 ~l~l~~~~~~~l~g~~~~~~~~~~~ 28 (190)
.+.++++++++++||+.........
T Consensus 12 ~~~~~~~~~~~lagC~~~~~~~~~~ 36 (185)
T 3k6v_A 12 DYDIPTTENLYFQGAMADNQPEPGN 36 (185)
T ss_dssp -------------------------
T ss_pred CCCCHHHHHHHHHHEECCCCCCCCC
T ss_conf 4652426666643101258899998
No 29
>>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} (A:1-97)
Probab=31.32 E-value=34 Score=14.74 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
Q ss_conf 8999999998885238745169999703458889
Q gi|254780953|r 131 QERADVIKSYLIQRGVSSNRFISVRGFAYKYPID 164 (190)
Q Consensus 131 ~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~ 164 (190)
..|...|.+.|...|+..--.-.+.|||..+...
T Consensus 10 p~~~~~v~~aL~~~Gv~g~Tv~~V~G~G~~~g~~ 43 (97)
T 1hwu_A 10 PFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHT 43 (97)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEEC------
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
T ss_conf 8999999999997799749999704267667742
No 30
>>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} (A:1-143,A:308-349)
Probab=28.35 E-value=21 Score=15.94 Aligned_cols=26 Identities=4% Similarity=-0.019 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 78999999999997514788765444
Q gi|254780953|r 3 KELGLSMFIMTTISGCGLASREKKKV 28 (190)
Q Consensus 3 k~l~l~~~~~~~l~g~~~~~~~~~~~ 28 (190)
+.+.++++++++++||+.........
T Consensus 8 ~~~~~~l~~al~LagCgg~~~~~~~~ 33 (185)
T 2w7y_A 8 HHHSSGLVPRGSHXASGTSKDASGGS 33 (185)
T ss_dssp --------------------------
T ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 20577788612774467889888888
No 31
>>2gw8_A PII signal transduction protein; transcriptional regulation, structural genomics, oxford protein production facility, OPPF; 1.85A {Neisseria meningitidis MC58} (A:)
Probab=25.55 E-value=43 Score=14.15 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 899999999888523874516999970345888
Q gi|254780953|r 131 QERADVIKSYLIQRGVSSNRFISVRGFAYKYPI 163 (190)
Q Consensus 131 ~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~ 163 (190)
..|+..|.+.|..-|+..--...+.|+|...-.
T Consensus 12 p~k~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~ 44 (114)
T 2gw8_A 12 PFKLDDVREALTEIGITGMTVSEVKGFGRQKGH 44 (114)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECC----
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
T ss_conf 999999999999789971999963421366686
No 32
>>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} (A:129-256)
Probab=23.20 E-value=48 Score=13.89 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHHHH-CCCCEEEEEEECC----C---------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 99999999999999985-8994899998037----7---------87200111225899999999888523874516999
Q gi|254780953|r 89 EKKFLPMLQLIATILNK-FPSTVIAIQSHTD----S---------IGTLKNNLLISQERADVIKSYLIQRGVSSNRFISV 154 (190)
Q Consensus 89 ~~~~~~~L~~ia~~l~~-~~~~~i~I~GHTD----~---------~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v 154 (190)
..+.....+-|-..++. .|+..|.|-|--- . .+.......| -..+...|.+.|.....+...
T Consensus 21 R~Ev~~i~~~v~~~~~~~~p~~~v~i~GsyRRGk~~sgDvDiLithp~~~~~~~l----l~~vv~~L~~~g~i~~~l~~~ 96 (128)
T 2bcq_A 21 REEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGI----FSRLLDSLRQEGFLTDDLVSQ 96 (128)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEECHHHHTTCSEESSEEEEEECTTSSTTTTC----HHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHH----HHHHHHHHHHCCCEEEEEEEE
T ss_conf 9988988899999998469974699623111313301440045534770778899----999999998707524455542
Q ss_pred -------EEECCCCCCCCCCCHHHHHCCCCEEEEEEC
Q ss_conf -------970345888997697798529916999930
Q gi|254780953|r 155 -------RGFAYKYPIDTNDTKVGRQNNQRIEIQIFP 184 (190)
Q Consensus 155 -------~g~G~~~p~~~n~~~~~ra~NRRVei~i~~ 184 (190)
+.+|-.+ .|+.+ .+-|||+|.+.|
T Consensus 97 ~~~~~~~K~~gi~~--lp~~~----~~~RRvDi~~~P 127 (128)
T 2bcq_A 97 EENGQQQKYLGVCR--LPGPG----RRHRRLDIIVVP 127 (128)
T ss_dssp TTSTTCCEEEEEEC--CSSTT----CCCEEEEEEECC
T ss_pred CCCCCCEEEEEEEE--CCCCC----CCCCEEEEEECC
T ss_conf 14577436898676--47788----767346888538
No 33
>>1tia_A Lipase; hydrolase(carboxylic esterase); 2.10A {Penicillium camemberti} (A:)
Probab=20.19 E-value=56 Score=13.54 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 999999999998589948999980377872001112258999999998885238745169999703458889976
Q gi|254780953|r 93 LPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTND 167 (190)
Q Consensus 93 ~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~ 167 (190)
...++.|-..++++|+.+|.|.||. |+-.=|.-..-+|...+..+ +.+..||. |..-|.
T Consensus 121 ~~i~~~i~~~~~~~~~~~i~vTGHS-----------LGGAiA~L~a~~l~~~~~~~---~~~~tfG~--PrvGn~ 179 (279)
T 1tia_A 121 DDIIKELKEVVAQNPNYELVVVGHS-----------LGAAVATLAATDLRGKGYPS---AKLYAYAS--PRVGNA 179 (279)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCC-----------HHHHHHHHHHHHHHHCCCCC---CEEEEECC--CCCCCH
T ss_conf 9999999999976899359985251-----------78999999999998638985---21798468--542789
No 34
>>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} (A:)
Probab=20.15 E-value=51 Score=13.73 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 999999888523874516999970
Q gi|254780953|r 134 ADVIKSYLIQRGVSSNRFISVRGF 157 (190)
Q Consensus 134 A~~V~~~L~~~g~~~~r~i~v~g~ 157 (190)
...|+++|+..|..+.+.|.+.||
T Consensus 103 ~~~i~~~L~~~g~~~~~~I~vhg~ 126 (126)
T 2if1_A 103 RKNICQFLVEIGLAKDDQLKVHGF 126 (126)
T ss_dssp HHHHHHHHHHHTSSCTTTEECCCC
T ss_pred HHHHHHHHHHCCCCCCCCEEECCC
T ss_conf 999999999839997044884679
Done!