HHsearch results for GI: 254780953 and protein with PDBid: 1r1m_A

>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=99.97  E-value=7.2e-31  Score=190.90  Aligned_cols=111  Identities=23%  Similarity=0.292  Sum_probs=103.0

Q ss_pred             EEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             9852211128-813109999999999999998589948999980377872001112258999999998885238745169
Q gi|254780953|r   74 CYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFI  152 (190)
Q Consensus        74 ~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i  152 (190)
                      +.++..++|+ +++.|+++++..|+.|+.+|+.+|...|.|+||||+.|+.+|||.||++||++|++||+..|+.+.| |
T Consensus        11 i~l~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~~I~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~r-i   89 (164)
T 1r1m_A           11 ISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSR-I   89 (164)
T ss_dssp             EEEEHHHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGG-E
T ss_pred             EEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH-E
T ss_conf             997773357289743698999999999999977898189999981898985562699999999999999985999899-8


Q ss_pred             EEEEECCCCCCCCCCCHHHHHC--------------------CCCEEEEEECC
Q ss_conf             9997034588899769779852--------------------99169999301
Q gi|254780953|r  153 SVRGFAYKYPIDTNDTKVGRQN--------------------NQRIEIQIFPR  185 (190)
Q Consensus       153 ~v~g~G~~~p~~~n~~~~~ra~--------------------NRRVei~i~~~  185 (190)
                      .+.|||+++|+++|.++.++++                    ||||||.|.+-
T Consensus        90 ~~~g~Ge~~P~~~n~t~~~~a~~~~~~~~~~~r~~~i~~~~~NRRVEi~v~~~  142 (164)
T 1r1m_A           90 SAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRRVDVKIRSI  142 (164)
T ss_dssp             EEEECTTTTCCCHHHHHHHHHTCCSSCCSSHHHHHHHHHTGGGSEEEEEEEEE
T ss_pred             EEEEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf             99997676888989797887421441000000466653037889889999614