HHsearch results for GI: 254780953 and protein with PDBid: 3cyp_B
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=99.96 E-value=3.7e-29 Score=181.37 Aligned_cols=108 Identities=27% Similarity=0.430 Sum_probs=96.3
Q ss_pred CEEC-CCHH-HCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 1112-8813-1099999999999999985899-4899998037787----200111225899999999888523874516
Q gi|254780953|r 79 HVSF-VSEV-FLEKKFLPMLQLIATILNKFPS-TVIAIQSHTDSIG----TLKNNLLISQERADVIKSYLIQRGVSSNRF 151 (190)
Q Consensus 79 ~~~f-~~~a-~l~~~~~~~L~~ia~~l~~~~~-~~i~I~GHTD~~g----~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~ 151 (190)
.+.| .+++ .|+++++..|++|+.+|+.+|+ ..|.|+||||+.| .+.|||.||++||.+|+.||+..|+++.|
T Consensus 4 ~~~F~~~~s~~l~~~~~~~L~~ia~~l~~~p~~~~I~I~GhTD~~~~~~~~~~~N~~LS~~RA~~V~~~L~~~Gi~~~r- 82 (138)
T 3cyp_B 4 PFTFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQ- 82 (138)
T ss_dssp CEECSSTTCCCCCHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTCCGGG-
T ss_pred CEECCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE-
T ss_conf 7661899734419989999999999999689970799988528988777761779999999999999999985999643-
Q ss_pred EEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHH
Q ss_conf 999970345888997697798529916999930101
Q gi|254780953|r 152 ISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187 (190)
Q Consensus 152 i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~ 187 (190)
|.+.|||+++|+++|+++++|++||||||+|.+...
T Consensus 83 i~~~g~G~~~P~~~n~~~~~~a~NRRVEI~i~~~~~ 118 (138)
T 3cyp_B 83 LSFSSYGSTNPIAPNDSLENRMKNNRVEIFFSTDAN 118 (138)
T ss_dssp EEEEECTTCSCSSCTTSHHHHHHHSEEEEEEEEEHH
T ss_pred EEEEEEECCCCCCCCCCHHHHHHCCCEEEEEECCHH
T ss_conf 688210013757999397899873988999976867