HHSEARCH alignment of GI: 254780953 and SCOP domain: d2hqsc1

Alignment
>d2hqsc1 d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Escherichia coli [TaxId: 562]}
Probab=99.96  E-value=1.9e-29  Score=181.56  Aligned_cols=103  Identities=26%  Similarity=0.404  Sum_probs=97.7

Q ss_pred             CCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             211128-8131099999999999999985899489999803778720011122589999999988852387451699997
Q gi|254780953|r   78 VHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRG  156 (190)
Q Consensus        78 ~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g  156 (190)
                      ..+||+ +++.|+++++..|++++..|+.+|+..|.|+||||..|+..+||.||++||.+|++||+..|+++.| |.+.|
T Consensus         2 ~~iyF~~~s~~l~~~~~~~L~~l~~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~r-i~~~g   80 (106)
T d2hqsc1           2 NIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQ-ISIVS   80 (106)
T ss_dssp             CEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGG-EEEEE
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EEEEE
T ss_conf             98994799773898899999999999986899579998433422104666558899876799999866986644-89998


Q ss_pred             ECCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf             0345888997697798529916999
Q gi|254780953|r  157 FAYKYPIDTNDTKVGRQNNQRIEIQ  181 (190)
Q Consensus       157 ~G~~~p~~~n~~~~~ra~NRRVei~  181 (190)
                      ||+.+|+++|.++++|++||||||+
T Consensus        81 ~G~~~p~~~~~~~~~~~~NRRVeii  105 (106)
T d2hqsc1          81 YGKEKPAVLGHDEAAYSKNRRAVLV  105 (106)
T ss_dssp             CTTSSCSSCSSSHHHHHHHSEEEEE
T ss_pred             ECCCCCCCCCCCHHHHHHCCCEEEE
T ss_conf             3564767899097799714949996


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: OmpA-like
family: OmpA-like
domain: Peptidoglycan-associated lipoprotein, PAL, periplasmic domain
species: Escherichia coli [TaxId: 562]