RPSBLAST alignment for GI: 254780953 and conserved domain: TIGR03350

>gnl|CDD|132393 TIGR03350, type_VI_ompA, type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. Length = 137

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 92  FLPMLQLIATIL--NKFPSTVIAIQSHTDS--IGTLK--NNLLISQERADVIKSYLIQRG 145
           F P+L  IA  L       TV+    HTD+  I T +  +N  +S+ RA  +   L Q G
Sbjct: 45  FEPLLDRIAKALAAVPGRITVVG---HTDNVPIRTSRFPSNWHLSEARAKAVADVLAQGG 101

Query: 146 VSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQI 182
           V + R +   G     PI +N T  GR  N+R+EI +
Sbjct: 102 VPAGR-VRAEGRGDSEPIASNATAAGRAQNRRVEIDV 137