RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus
Liberibacter asiaticus str. psy62]
(190 letters)
>gnl|CDD|182507 PRK10510, PRK10510, putative outer membrane lipoprotein;
Provisional.
Length = 219
Score = 88.4 bits (219), Expect = 1e-18
Identities = 48/142 (33%), Positives = 81/142 (57%), Gaps = 2/142 (1%)
Query: 44 GSSLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSF-VSEVFLEKKFLPMLQLIATI 102
G +D E + + +++ TG+ V+R GD I +P +V+F S L+ L +A +
Sbjct: 78 GYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMV 137
Query: 103 LNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYP 162
L ++P T + + +TDS G+ N+ +SQ+RAD + S LI +GV ++R I +G P
Sbjct: 138 LKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASR-IRTQGMGPANP 196
Query: 163 IDTNDTKVGRQNNQRIEIQIFP 184
I +N T G+ N+R+EI + P
Sbjct: 197 IASNSTAEGKAQNRRVEITLSP 218
>gnl|CDD|181590 PRK08944, motB, flagellar motor protein MotB; Reviewed.
Length = 302
Score = 70.8 bits (174), Expect = 2e-13
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 49 KAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFVS-EVFLEKKFLPMLQLIATILNKFP 107
K + + +++D I + +G I I SF S FL+ KF P+++ I +L P
Sbjct: 150 KLAQQLEKEIEDGAIEIESLGQQIIIRIREKGSFPSGSAFLQPKFKPVVRKIGELLKDVP 209
Query: 108 STVIAIQSHTDSIGT----LKNNLLISQERADVIKSYLIQ-RGVSSNRFISVRGFAYKYP 162
I + HTD++ ++N +S RA + L++ +G R V G A P
Sbjct: 210 GI-ITVSGHTDNVPISSELYRSNWDLSSARAVAVAHELLKVKGFDPQRLK-VVGMADTQP 267
Query: 163 IDTNDTKVGRQNNQRIEIQI 182
+ NDT R N+R+EI I
Sbjct: 268 LVPNDTAENRARNRRVEIII 287
>gnl|CDD|181435 PRK08457, motB, flagellar motor protein MotB; Reviewed.
Length = 257
Score = 57.0 bits (138), Expect = 2e-09
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 96 LQLIATILNKFPSTV-IAIQSHTDS----IGTLKNNLLISQERADVIKSYLIQRGVSSNR 150
L+ IA I+ K P V I ++ +TD+ K++ ++ RA + LIQ G++ NR
Sbjct: 142 LKRIAKIITKLPKQVKINVRGYTDNSPLNKSRYKDHYELAAARAYNVMKVLIQYGINPNR 201
Query: 151 FISVRGFAYKYPIDTNDTKVGRQNNQRIEI 180
+S + PI ND+ R N R+EI
Sbjct: 202 -LSFSSYGSNNPIAPNDSLENRLKNNRVEI 230
>gnl|CDD|131849 TIGR02802, Pal_lipo, peptidoglycan-associated lipoprotein. Members
of this protein are Pal (also called OprL), the
Peptidoglycan-Associated Lipoprotein of the Tol-Pal
system. The system appears to be involved both in the
maintenance of outer membrane integrity and in the
import of certain organic molecules as nutrients.
Members of this family contain a hydrodrophobic
lipoprotein signal sequence, a conserved N-terminal
cleavage and modification site, a poorly conserved
low-complexity region, together comprising about 65
amino acids, and a well-conserved C-terminal domain. The
seed alignment for this model includes only the
conserved C-terminal domain.
Length = 104
Score = 55.6 bits (135), Expect = 7e-09
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 92 FLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRF 151
+L A L K PS + I+ HTD GT + NL + + RA+ +K YL +GVS+++
Sbjct: 15 AQAILDAHAAYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQAKGVSASQ- 73
Query: 152 ISVRGFAYKYPIDTNDTKVGRQNNQRIEI 180
I + + P + N+R +
Sbjct: 74 IETVSYGEEKPACLGHDEAAWAKNRRAVL 102
>gnl|CDD|180801 PRK07033, PRK07033, hypothetical protein; Provisional.
Length = 427
Score = 55.8 bits (135), Expect = 7e-09
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 91 KFLPMLQLIATILNKFPSTVIAIQSHTDS--IGTLK--NNLLISQERADVIKSYLIQRGV 146
++ P+L +A LN+ V+ + ++D+ I T + +N +SQ RA +++ L R
Sbjct: 328 RYQPVLARVADALNQVKGNVL-VTGYSDNVPIRTARFPSNWELSQARAQAVRALLAARLG 386
Query: 147 SSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187
R + G P+ ND+ R N+R+EI +
Sbjct: 387 QPERV-TAEGRGDSDPVAPNDSAENRARNRRVEITLLVAPG 426
>gnl|CDD|132393 TIGR03350, type_VI_ompA, type VI secretion system OmpA/MotB family
protein. The flagellar motor protein MotB and the
Gram-negative bacterial outer membrane protein OmpA
share a region of sequence homology. This model
describes a domain found fused to type VI secretion
system homologs of the type IV system protein DotU (see
model TIGR03349), with OmpA/MotB homology.
Length = 137
Score = 55.0 bits (133), Expect = 1e-08
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 92 FLPMLQLIATIL--NKFPSTVIAIQSHTDS--IGTLK--NNLLISQERADVIKSYLIQRG 145
F P+L IA L TV+ HTD+ I T + +N +S+ RA + L Q G
Sbjct: 45 FEPLLDRIAKALAAVPGRITVVG---HTDNVPIRTSRFPSNWHLSEARAKAVADVLAQGG 101
Query: 146 VSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQI 182
V + R + G PI +N T GR N+R+EI +
Sbjct: 102 VPAGR-VRAEGRGDSEPIASNATAAGRAQNRRVEIDV 137
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 53.0 bits (128), Expect = 5e-08
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 110 VIAIQSHTD-----SIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPID 164
V+ + HTD G ++N +S RA + +LI GV ++R ++ GF P+D
Sbjct: 264 VLRVDGHTDNVPLSGTGRFRDNWELSSARAISVVKFLIALGVPADR-LAAAGFGEFQPLD 322
Query: 165 TNDTKVGRQNNQRIEI 180
DT R N+RIE+
Sbjct: 323 PGDTPEARARNRRIEL 338
>gnl|CDD|163501 TIGR03789, pdsO, proteobacterial sortase system OmpA family
protein. A newly defined histidine kinase (TIGR03785)
and response regulator (TIGR03787) gene pair occurs
exclusively in Proteobacteria, mostly of marine origin,
nearly all of which contain a subfamily 6 sortase
(TIGR03784) and its single dedicated target protein
(TIGR03788) adjacent to to the sortase. This protein
family shows up in only in those species with the
histidine kinase/response regulator gene pair, and often
adjacent to that pair. It belongs to the OmpA protein
family (pfam00691). Its function is unknown. We assign
the gene symbol pdsO, for Proteobacterial Dedicated
Sortase system OmpA family protein.
Length = 239
Score = 52.5 bits (126), Expect = 7e-08
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 88 LEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVS 147
+E F P L +AT++ + P + + + D G + N +S++R ++SYLI++GV
Sbjct: 146 IEPHFQPQLDEVATLMKQSPELKLDLSGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVD 205
Query: 148 SNRFISVRGFAYKYPI-DTND 167
R ++ + F P+ D +
Sbjct: 206 EAR-LTTQAFGESAPLKDEQE 225
>gnl|CDD|181240 PRK08126, PRK08126, hypothetical protein; Provisional.
Length = 432
Score = 49.7 bits (119), Expect = 4e-07
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 94 PMLQLIATILNKFPSTVIAIQSHTDSI----GTLKNNLLISQERADVIKSYLIQRGVSSN 149
P++ IA + + V + HTD+ +NL++S++RA + L GV ++
Sbjct: 340 PLIAKIAREIARVGGKVT-VTGHTDNQPIRSAQFASNLVLSEKRAAQVAQMLQSAGVPAS 398
Query: 150 RFISV-RGFAYKYPIDTNDTKVGRQNNQRIEI 180
R +V +G A P+ N T GR N+R+EI
Sbjct: 399 RLEAVGKGDA--QPVADNRTPQGRAQNRRVEI 428
>gnl|CDD|182748 PRK10808, PRK10808, outer membrane protein A; Reviewed.
Length = 351
Score = 47.8 bits (114), Expect = 2e-06
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 116 HTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPI--DTNDTKVGRQ 173
+TD IG+ N +S++RA + YL+ +G+ +++ IS RG P+ +T D R
Sbjct: 265 YTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADK-ISARGMGKSNPVTGNTCDNVKPRA 323
Query: 174 N-------NQRIEIQI 182
++R+EI++
Sbjct: 324 ALIDCLAPDRRVEIEV 339
>gnl|CDD|182172 PRK09967, PRK09967, putative outer membrane lipoprotein;
Provisional.
Length = 160
Score = 45.4 bits (107), Expect = 8e-06
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 97 QLIATILNKFPSTVIA---IQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFIS 153
Q I T+ K ST + + HTD+ G N +S +RA+V+ G ++
Sbjct: 69 QQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLT 128
Query: 154 VRGFAYKYPIDTNDTKVGRQNNQRIEIQIFP 184
+G KYPI +N T GR N+R+ + I
Sbjct: 129 TQGLGKKYPIASNKTAQGRAENRRVAVVITT 159
>gnl|CDD|180652 PRK06667, motB, flagellar motor protein MotB; Validated.
Length = 252
Score = 45.6 bits (108), Expect = 9e-06
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 113 IQSHTDSI-----GTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTND 167
I+ HTD++ G K+N +S RA + Y++ G S + V GFA P+ T D
Sbjct: 164 IEGHTDNVDVNPEGPWKSNWELSGARAVNMLEYILNYGDQSESWFQVSGFAGSRPLATED 223
Query: 168 TKVGRQNNQRIEIQIFPRGNIKK 190
T GR N+RI+I I ++ +
Sbjct: 224 TPEGRAYNRRIDIVILTDASLSR 246
>gnl|CDD|180754 PRK06925, PRK06925, flagellar motor protein MotS; Reviewed.
Length = 230
Score = 44.8 bits (106), Expect = 1e-05
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 94 PMLQLIATILNKFPSTVIAIQSHTDS--IGTLK--NNLLISQERADVIKSYLIQR-GVSS 148
P L I +L+ P+ I ++ HTDS I T + +N +S RA + Y + + S
Sbjct: 135 PFLHKIGVLLSTIPN-DIKVEGHTDSRPISTYRYPSNWELSAARASSVIRYFTSKEKLDS 193
Query: 149 NRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQI 182
+RFI+V G+A P+ N T+ Q N+R+EI I
Sbjct: 194 SRFIAV-GYADTKPVVPNTTEENMQENRRVEIVI 226
>gnl|CDD|181618 PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.
Length = 281
Score = 44.6 bits (106), Expect = 2e-05
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 96 LQLIATILNKFPSTVIAIQSHTDS--IGTLK--NNLLISQERADVIKSYLIQRGVSSNRF 151
L+ +A +L P+ I ++ TD+ I T + +N +S RA + L GV+ +R
Sbjct: 152 LEKVAEVLKPAPNP-IHVEGFTDNVPIATAQFPSNWELSAARAASVVRLLADDGVAPSRL 210
Query: 152 ISVRGFAYKYPIDTNDTKVGRQNNQRIEIQI 182
+V G+ P+ NDT GR N+R+ + I
Sbjct: 211 AAV-GYGEFQPVADNDTAEGRARNRRVVLVI 240
>gnl|CDD|181095 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 42.8 bits (101), Expect = 6e-05
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 90 KKFLPMLQLIATILNKFPSTVIAIQSHTDSI----GTLKNNLLISQERADVIKSYLIQRG 145
+ LP+ + I+ +L P I I HTD++ +N +S RA L++
Sbjct: 155 LEDLPLAKEISNLLVSNPPRNITISGHTDNVPIANAQFASNWELSVMRAVNFMQVLLENK 214
Query: 146 VSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRG 186
S +G+ PI +NDT GR N+R+E+ I P
Sbjct: 215 ELDPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLILPLT 255
>gnl|CDD|182744 PRK10802, PRK10802, peptidoglycan-associated outer membrane
lipoprotein; Provisional.
Length = 173
Score = 42.5 bits (100), Expect = 6e-05
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 92 FLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRF 151
F ML A L PS + ++ H D GT + N+ + + RA+ +K YL +GVS+++
Sbjct: 84 FAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQ- 142
Query: 152 ISVRGFAYKYP 162
IS+ + + P
Sbjct: 143 ISIVSYGKEKP 153
>gnl|CDD|168775 PRK07034, PRK07034, hypothetical protein; Provisional.
Length = 536
Score = 37.5 bits (86), Expect = 0.002
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 83 VSEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDS----IGTLKNNLLISQERADVIK 138
+SE F+ KK + L L L +P + I HTD+ + NNL +S RA V+
Sbjct: 405 LSEEFINKKNIERLGLA---LAPWPGDIEVI-GHTDNKPFRSTSGNNNLKLSAARASVVA 460
Query: 139 SYL---IQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEI 180
L Q + R IS G P+ N T+ GR+ N+R++I
Sbjct: 461 DKLRESTQINETHQREISAIGRGESDPLADNATEEGRKRNRRVDI 505
>gnl|CDD|181620 PRK09040, PRK09040, hypothetical protein; Provisional.
Length = 214
Score = 36.5 bits (85), Expect = 0.004
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 125 NNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFP 184
+N +S +RA + LI GV ++ + F + P+ +N GR N+R+EI P
Sbjct: 145 DNWELSAQRALTVTRALIDAGVPASSVFAA-AFGSEQPVASNADDEGRAKNRRVEIAPVP 203
Query: 185 R 185
R
Sbjct: 204 R 204
>gnl|CDD|180691 PRK06778, PRK06778, hypothetical protein; Validated.
Length = 289
Score = 32.6 bits (74), Expect = 0.059
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 92 FLPMLQLIATILNKFPSTVIAIQSHTDSIG---TLKNNLLISQERADVIKSYLIQRGVSS 148
F +L +A + + + +I I HTD++ + NN +S +RA + L + G+
Sbjct: 167 FKTLLVELAPVFDSLDNKII-ITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPE 225
Query: 149 NRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQI 182
++ + V A + +D + + N+RIEI +
Sbjct: 226 DKVMQVSAMADQMLLDAKNPQSAG--NRRIEIMV 257
>gnl|CDD|102525 PRK06742, PRK06742, flagellar motor protein MotS; Reviewed.
Length = 225
Score = 28.9 bits (64), Expect = 0.75
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 24/166 (14%)
Query: 31 HKSNDTDIVNKRFGSSLDK---------AEDEFQMQLQDTGIVVSRIGDMITCYIPVHVS 81
H+ ND +++K+ L K + + +DTG+ V + ++I +V
Sbjct: 68 HEKNDEKMISKKRMDELYKKLKAYVDNNGISQVNVYREDTGVSVVIVDNLIFDTGDANVK 127
Query: 82 FVSEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSI----GTLKNNLLISQERADVI 137
++ + + + P+ ++ ++ HTDS +N +S RA +
Sbjct: 128 PEAKEIISQ--------LVGFFQSVPNPIV-VEGHTDSRPIHNDKFPSNWELSSARAANM 178
Query: 138 KSYLIQ-RGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQI 182
+LI+ V R +V G+A P+ ND+ + N+R+ I I
Sbjct: 179 IHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWEKNRRVVIYI 223
>gnl|CDD|133902 PHA00457, PHA00457, inhibitor of host bacterial RNA polymerase.
Length = 63
Score = 29.1 bits (65), Expect = 0.76
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 12 MTTISGCGLASREKKKVFLHKSNDTDIVNKRFGSSLDKAEDEFQMQLQDTGIVVSRI 68
M+ ++ L + EKK + + + + SL++A + + Q G VV+RI
Sbjct: 1 MSNLNKGSLVNGEKKFIATVEGSGQSFEVPVYAKSLEEATELAEWQYVPAGFVVTRI 57
>gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase.
Length = 473
Score = 28.5 bits (64), Expect = 1.2
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 135 DVIKSYLIQRGVSS------NRFISVRGFAYKYPIDTNDTK 169
D KS + R VSS + I+V GFA+K DT DT+
Sbjct: 304 DYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKK--DTGDTR 342
>gnl|CDD|132022 TIGR02977, phageshock_pspA, phage shock protein A. Members of
this family are the phage shock protein PspA, from the
phage shock operon. This is a narrower family than the
set of PspA and its homologs, sometimes several in a
genome, as described by PFAM model pfam04012. PspA
appears to maintain the protonmotive force under stress
conditions that include overexpression of certain phage
secretins, heat shock, ethanol, and protein export
defects.
Length = 219
Score = 27.6 bits (62), Expect = 1.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 36 TDIVNKRFGSSLDKAEDEFQM 56
DIVN + LDKAED +M
Sbjct: 8 ADIVNSNLNALLDKAEDPEKM 28
>gnl|CDD|148052 pfam06218, NPR2, Nitrogen permease regulator 2. This family of
regulators are involved in post-translational control of
nitrogen permease.
Length = 400
Score = 27.7 bits (62), Expect = 2.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 125 NNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYK---YPIDTNDTKVGR 172
++ S D IK+Y+I + N+ I+V+ Y+ YP++ ++K R
Sbjct: 28 GSIKNSLFDFDTIKNYIIPKPQLCNKLITVKANKYRIIGYPVNIENSKYAR 78
>gnl|CDD|183882 PRK13186, lpxC, UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; Reviewed.
Length = 295
Score = 27.8 bits (63), Expect = 2.0
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 60 DTGIVVSRIGDMITCYIPVHVSFVSEVFL 88
+TGIV R IP V + L
Sbjct: 34 NTGIVFRRTDLPPPVEIPARAENVGDTRL 62
>gnl|CDD|172932 PRK14456, PRK14456, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 368
Score = 27.1 bits (60), Expect = 2.7
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 27 KVFLHKSNDTD---IVNKRFGSSLDKAEDEFQMQLQDTGIVVS 66
F K N D IVN +F + F+ +L D G+ V+
Sbjct: 304 SRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLLDAGLQVT 346
>gnl|CDD|130503 TIGR01436, glu_cys_lig_pln, glutamate--cysteine ligase, plant type.
This model represents one of two highly dissimilar
forms of glutamate--cysteine ligase
(gamma-glutamylcysteine synthetase), an enzyme of
glutathione biosynthesis. The other type is modeled by
TIGR01434. This type is found in plants (with a probable
transit peptide), root nodule and other bacteria, but
not E. coli and closely related species.
Length = 446
Score = 26.8 bits (59), Expect = 3.6
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 15/64 (23%)
Query: 70 DMI--TCYIPVHVSFVSEVFLEKKF-LPM-LQLIATIL-----------NKFPSTVIAIQ 114
DM+ TC + V++ F SE + +KF + LQ +AT L N F S I
Sbjct: 162 DMMLRTCTVQVNLDFSSEADMVRKFRASLALQPLATALFANSPFLEGKPNGFLSYRSHIW 221
Query: 115 SHTD 118
+ TD
Sbjct: 222 TDTD 225
>gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional.
Length = 989
Score = 27.0 bits (59), Expect = 3.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 64 VVSRIGDMITCYIPVHVSFVSEVFLEKKF 92
++S + D++ P HV F +++FL K F
Sbjct: 151 MMSEVDDILVTVNPKHVKFYTDIFLFKPF 179
>gnl|CDD|182781 PRK10854, PRK10854, exopolyphosphatase; Provisional.
Length = 513
Score = 26.6 bits (59), Expect = 4.3
Identities = 8/20 (40%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 87 FLEKKFLPMLQL--IATILN 104
F +K++LP++QL + +LN
Sbjct: 427 FKKKQYLPLIQLLRLGVLLN 446
>gnl|CDD|182769 PRK10838, spr, outer membrane lipoprotein; Provisional.
Length = 190
Score = 26.3 bits (58), Expect = 4.9
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 8 SMFIMTTISGCGLASREKKKVFLHKSNDTDIVNKRFGSSLDKAEDEFQMQLQDTGIVVSR 67
++ + +S C + K +T V GSSL ++DEF+ +++ + SR
Sbjct: 16 AIAVAVLLSACSANNTAKNM-----HTETRAVGDSDGSSLQASQDEFENMVRNVDV-KSR 69
Query: 68 IGD 70
I D
Sbjct: 70 IMD 72
>gnl|CDD|185529 PTZ00257, PTZ00257, Glycoprotein GP63 (leishmanolysin);
Provisional.
Length = 622
Score = 26.2 bits (57), Expect = 5.0
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 113 IQSHTDSIGTLKNNLLISQERADVIKSYLIQRGV 146
+ +H + T ++++E+ D++ SYLI + +
Sbjct: 130 VSNHAGAFVTCTAEDILTEEKRDILVSYLIPQAL 163
>gnl|CDD|182657 PRK10698, PRK10698, phage shock protein PspA; Provisional.
Length = 222
Score = 25.9 bits (57), Expect = 7.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 37 DIVNKRFGSSLDKAED 52
DIVN + L+KAED
Sbjct: 9 DIVNANINALLEKAED 24
>gnl|CDD|178682 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional.
Length = 1195
Score = 25.6 bits (56), Expect = 7.3
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 21 ASREKKKVFLHKSNDTDIVNKRFGSSLDKAEDEF 54
S+ KKK +K+ + N R ++ +D+
Sbjct: 1143 TSQSKKKTVKNKNKGVEHGNSRETDRRNQCDDDL 1176
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.137 0.380
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,915,228
Number of extensions: 172316
Number of successful extensions: 342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 41
Length of query: 190
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,092,969
Effective search space: 417482838
Effective search space used: 417482838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)