RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus
Liberibacter asiaticus str. psy62]
(190 letters)
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha
beta, palmitate, transmembrane, structural genomics,
PSI-2; NMR {Escherichia coli K12} (A:)
Length = 149
Score = 91.7 bits (227), Expect = 6e-20
Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Query: 47 LDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFVS-EVFLEKKFLPMLQLIATILNK 105
+D E + + +++ TG+ V+R GD I +P +V+F S L+ L +A +L +
Sbjct: 3 MDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKE 62
Query: 106 FPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDT 165
+P T + + +TDS G N+ +SQ+RAD + S LI +GV ++R I +G PI +
Sbjct: 63 YPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASR-IRTQGLGPANPIAS 121
Query: 166 NDTKVGRQNNQRIEIQIFPR 185
N T G+ N+R+EI + P
Sbjct: 122 NSTAEGKAQNRRVEITLSPL 141
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like
domain, PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.30A {Legionella pneumophila}
(A:)
Length = 169
Score = 84.1 bits (207), Expect = 1e-17
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Query: 48 DKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFVS-EVFLEKKFLPMLQLIATILNKF 106
++ + LQ I GD T IP F L + P L + +LN +
Sbjct: 24 RDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFXFSSPRLNEICYPGLNNVIRLLNFY 83
Query: 107 PSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTN 166
P + I + TD++G+ + +SQ +A+ ++L G+++ R + G+ K I N
Sbjct: 84 PQSTIYVAGFTDNVGSRSHKRKLSQAQAETXXTFLWANGIAAKR-LKAEGYGDKNAISDN 142
Query: 167 DTKVGRQNNQRIEIQIFPR 185
G N+RIEIQ F
Sbjct: 143 AIIHGSAQNRRIEIQWFTS 161
>3khn_A MOTB protein, putative; structural genomics, OMPA-like
domain, PSI-2, protein structure initiative; 2.03A
{Desulfovibrio vulgaris str} (A:)
Length = 174
Score = 82.1 bits (202), Expect = 5e-17
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 7/152 (4%)
Query: 40 NKRFGSSLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFVS-EVFLEKKFLPMLQL 98
+ + ++ F + + I +IT +P V F V L +L
Sbjct: 13 IEAQRQTYNEXRTYFTVNGVEGVIGAVFDEGVITLRVPSEVLFAPGAVELAPGADRVLAT 72
Query: 99 IATILNKFPSTVIAIQSHTDSIGT-----LKNNLLISQERADVIKSYLIQRGVSSNRFIS 153
+ + + I I+ TD + K+N +S R+ + Y + G+ R ++
Sbjct: 73 LKDLFIRRREQNINIKGFTDDVQPSANARFKDNWEVSALRSVNVLRYFLGAGIEPAR-LT 131
Query: 154 VRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPR 185
G P+ N + R N+R+E + R
Sbjct: 132 ATGLGELDPLFPNTSDENRARNRRVEFVLERR 163
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU
DGL 6CL DAL; NMR {Haemophilus influenzae} (P:)
Length = 134
Score = 77.5 bits (190), Expect = 1e-15
Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 2/126 (1%)
Query: 56 MQLQDTGIVVSRIGDMITCYIPVHVSFVS-EVFLEKKFLPMLQLIATILNKFPSTVIAIQ 114
V F + + +++ +L A LN P+ + ++
Sbjct: 8 AAGNGAAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVE 67
Query: 115 SHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQN 174
+TD GT + N+ + Q RAD +K YL +GV + + + + + P +
Sbjct: 68 GNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGK-LGTVSYGEEKPAVLGHDEAAYSK 126
Query: 175 NQRIEI 180
N+R +
Sbjct: 127 NRRAVL 132
>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial
flagellum, cell inner membrane, cell membrane, flagellar
rotation, membrane; 1.75A {Salmonella typhimurium} PDB:
2zvz_A (A:)
Length = 183
Score = 75.6 bits (185), Expect = 4e-15
Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 10/146 (6%)
Query: 47 LDKAEDEFQMQLQDTGIVVSRIGDMITCY-IPVHVSFVS-EVFLEKKFLPMLQLIATILN 104
L +++ + + I + + G I F + +E +L+ IA +LN
Sbjct: 28 LIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLN 87
Query: 105 KFPSTVIAIQSHTDS-----IGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAY 159
P+ I++ HTD +N +S +RA+ + L+ G+ + + + V G A
Sbjct: 88 GIPNR-ISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAA 146
Query: 160 KYPIDTNDTKVGRQNNQRIEIQIFPR 185
+ N+RI + + +
Sbjct: 147 TMRLSDRGP--DDAINRRISLLVLNK 170
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL,
transport protein/lipoprotein complex; 1.50A
{Escherichia coli} (H:)
Length = 118
Score = 75.5 bits (185), Expect = 4e-15
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 88 LEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVS 147
+ F ML A L PS + ++ H D GT + N+ + + RA+ +K YL +GVS
Sbjct: 17 IRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVS 76
Query: 148 SNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPR 185
+ IS+ + + P + N+R +
Sbjct: 77 A-DQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVYLEH 113
>2zov_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial
flagellum, cell projection, flagellar rotation, inner
membrane, membrane; 2.00A {Salmonella typhimurium} (A:)
Length = 210
Score = 75.2 bits (184), Expect = 5e-15
Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 10/147 (6%)
Query: 46 SLDKAEDEFQMQLQDTGIVVSRIGDMITCY-IPVHVSFVS-EVFLEKKFLPMLQLIATIL 103
L +++ + + I + + G I F + +E +L+ IA +L
Sbjct: 38 QLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPXFKTGSAEVEPYXRDILRAIAPVL 97
Query: 104 NKFPSTVIAIQSHTDS-----IGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFA 158
N P+ + + HTD +N +S +RA+ + L+ G+ + + + V G A
Sbjct: 98 NGIPNRIS-LAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGXA 156
Query: 159 YKYPIDTNDTKVGRQNNQRIEIQIFPR 185
+ N+RI + + +
Sbjct: 157 ATXRLSDRGP--DDAINRRISLLVLNK 181
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria
meningitidis} (A:)
Length = 164
Score = 74.8 bits (183), Expect = 6e-15
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Query: 65 VSRIGDMITCYIPVHVSFVS-EVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTL 123
+ T + F + L + L+++A L++ + ++ HTD +G+
Sbjct: 2 QAPQYVDETISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSD 61
Query: 124 KNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIF 183
K N +S+ RA V+ + L+ GV +R IS G T + +
Sbjct: 62 KYNQALSERRAYVVANNLVSNGVPVSR-ISAVGLGESQAQMTQVCEAEVAKLGAKVSKAK 120
Query: 184 PR 185
R
Sbjct: 121 KR 122
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor,
peptidoglycan binding, bacterial flagellum, flagellar
rotation, inner membrane, membrane; 1.60A {Helicobacter
pylori} PDB: 3cyq_B* (B:)
Length = 138
Score = 74.3 bits (182), Expect = 1e-14
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 78 VHVSFVSEVFLEKKFLPMLQLIATILNKFP-STVIAIQSHTDSI----GTLKNNLLISQE 132
+ + + + ++ IA I+ K P I ++ TD K++ ++
Sbjct: 5 FTFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAAN 64
Query: 133 RADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPR 185
RA + LIQ GV+ N+ +S + PI ND+ R N R+EI
Sbjct: 65 RAYRVMKVLIQYGVNPNQ-LSFSSYGSTNPIAPNDSLENRMKNNRVEIFFSTD 116
>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta
barrel, 2-layer sandwich, flagellum, structural protein;
2.85A {Vibrio alginolyticus} (A:155-278)
Length = 124
Score = 69.3 bits (169), Expect = 3e-13
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 88 LEKKFLPMLQLIATILNKFPS-TVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGV 146
L K L IA + ++ + ++TDS + +S+ RA+ ++ Y G+
Sbjct: 19 LTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGL 78
Query: 147 SSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFP 184
+R I V+G+ + PI N + +G+ N+R+ I +
Sbjct: 79 PEDR-IQVQGYGKRRPIADNGSPIGKDKNRRVVISLGR 115
>2wnm_A Gene 2, GP2; small protein inhibntor bacterial RNA
polymerase, hydrolase; NMR {Enterobacteria phage T7}
(A:)
Length = 64
Score = 28.5 bits (63), Expect = 0.61
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 12 MTTISGCGLASREKKKVFLHKSNDTDIVNKRFGSSLDKAEDEFQMQLQDTGIVVSRI 68
M+ ++ L+ KK +S++ + +LD+A + + Q G V+R+
Sbjct: 1 MSNVNTGSLSVDNKKFWATVESSEHSFEVPIYAETLDEALELAEWQYVPAGFEVTRV 57
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
(A:1-74,A:165-343)
Length = 253
Score = 27.0 bits (59), Expect = 1.8
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 98 LIATILNKFPSTVIAIQSHTDSIGTLKNNLLIS 130
LI + + + +H DS + +S
Sbjct: 56 LIVWKGSGEK--KVILDAHIDSGFVEVSGKYVS 86
>3b7e_A Neuraminidase; 6-bladed beta-propeller, glycosidase,
hydrolase, membrane, transmembrane, virion; HET: NAG FUC
ZMR; 1.45A {Influenza a virus} PDB: 3beq_A* 3cye_A*
2hty_A* 2hu0_A* 2hu4_A* 3cl2_A* 3ckz_A* 3cl0_A* 2htv_A*
2htw_A* (A:1-95,A:265-385)
Length = 216
Score = 26.7 bits (59), Expect = 1.8
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 146 VSSNRFISVRGFAYKYPIDTNDTKVGR 172
++RF SV+GF+++Y N +GR
Sbjct: 87 PYNSRFESVKGFSFRY---DNGVWIGR 110
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} (A:)
Length = 98
Score = 26.4 bits (58), Expect = 2.7
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 20 LASREKKKVFLHKSNDTDIVNKRFGSSLDKAEDEFQMQLQDTGIVVSRI 68
+A V L K+ K FG + + E + + TGI + I
Sbjct: 1 MAGELIHMVTLDKTG-----KKSFGICIVRGEVKDSPNTKTTGIFIKGI 44
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative
PSI, hydrolase; 2.01A {Thermotoga maritima MSB8}
(A:1-63,A:152-340)
Length = 252
Score = 25.6 bits (55), Expect = 4.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 98 LIATILNKFPSTVIAIQSHTDSIGTLKNNLLIS 130
LIA + S + + +H DS KN +
Sbjct: 43 LIALKRGRDSSKKLLVSAHXDSDYIEKNGRAVG 75
>1ivd_A Influenza A subtype N2 neuraminidase; hydrolase
(O-glycosyl); HET: NAG BMA FUL MAN FUC ST1; 1.90A
{Influenza a virus} (A:97-264)
Length = 168
Score = 24.8 bits (54), Expect = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 117 TDSIGTLKNNLLISQERA 134
DSIG+ N+L +QE
Sbjct: 35 VDSIGSWSQNILRTQESE 52
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.137 0.380
Gapped
Lambda K H
0.267 0.0486 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,275,358
Number of extensions: 50873
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 23
Length of query: 190
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 106
Effective length of database: 2,116,429
Effective search space: 224341474
Effective search space used: 224341474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)