RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus
Liberibacter asiaticus str. psy62]
         (190 letters)



>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM,
           C-terminal domain {Neisseria meningitidis [TaxId: 487]}
          Length = 140

 Score = 60.6 bits (146), Expect = 8e-11
 Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 28/137 (20%)

Query: 75  YIPVHVSFVSEVF-------LEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNL 127
           Y+   +S  ++         L  +    L+++A  L++     + ++ HTD +G+ K N 
Sbjct: 3   YVDETISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQ 62

Query: 128 LISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGR--------------- 172
            +S+ RA V+ + L+  GV  +R IS  G        T   +                  
Sbjct: 63  ALSERRAYVVANNLVSNGVPVSR-ISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREA 121

Query: 173 -----QNNQRIEIQIFP 184
                + ++R++++I  
Sbjct: 122 LIACIEPDRRVDVKIRS 138


>d2hqsc1 d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotein,
           PAL, periplasmic domain {Escherichia coli [TaxId: 562]}
          Length = 106

 Score = 57.4 bits (138), Expect = 8e-10
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 88  LEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVS 147
           +   F  ML   A  L   PS  + ++ H D  GT + N+ + + RA+ +K YL  +GVS
Sbjct: 13  IRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVS 72

Query: 148 SNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEI 180
           ++  IS+  +  + P      +     N+R  +
Sbjct: 73  AD-QISIVSYGKEKPAVLGHDEAAYSKNRRAVL 104


>d2aizp1 d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein,
           PAL, periplasmic domain {Haemophilus influenzae [TaxId:
           727]}
          Length = 134

 Score = 54.8 bits (131), Expect = 5e-09
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 88  LEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVS 147
           +  +++ +L   A  LN  P+  + ++ +TD  GT + N+ + Q RAD +K YL  +GV 
Sbjct: 41  ITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVD 100

Query: 148 SNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEI 180
           + +  +V  +  + P      +     N+R  +
Sbjct: 101 AGKLGTV-SYGEEKPAVLGHDEAAYSKNRRAVL 132


>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
           [TaxId: 2094]}
          Length = 409

 Score = 26.3 bits (57), Expect = 1.7
 Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 46  SLDKA---EDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFVSEVFLEKKFLP 94
               A     +F  +L+   I V  + D++     +      +  +E+    
Sbjct: 49  ESHDARKEHKQFVAELKANDINVVELIDLVAETYDLASQEAKDKLIEEFLED 100


>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus,
           different strains [TaxId: 11520]}
          Length = 390

 Score = 24.0 bits (52), Expect = 8.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 117 TDSIGTLKNNLLISQE 132
           TD+  +  NN+L +QE
Sbjct: 135 TDTYHSYANNILRTQE 150


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.380 

Gapped
Lambda     K      H
   0.267   0.0514    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 644,324
Number of extensions: 27525
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 12
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)