RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] (190 letters) >d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM, C-terminal domain {Neisseria meningitidis [TaxId: 487]} Length = 140 Score = 60.6 bits (146), Expect = 8e-11 Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 28/137 (20%) Query: 75 YIPVHVSFVSEVF-------LEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNL 127 Y+ +S ++ L + L+++A L++ + ++ HTD +G+ K N Sbjct: 3 YVDETISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQ 62 Query: 128 LISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGR--------------- 172 +S+ RA V+ + L+ GV +R IS G T + Sbjct: 63 ALSERRAYVVANNLVSNGVPVSR-ISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREA 121 Query: 173 -----QNNQRIEIQIFP 184 + ++R++++I Sbjct: 122 LIACIEPDRRVDVKIRS 138 >d2hqsc1 d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Escherichia coli [TaxId: 562]} Length = 106 Score = 57.4 bits (138), Expect = 8e-10 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 88 LEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVS 147 + F ML A L PS + ++ H D GT + N+ + + RA+ +K YL +GVS Sbjct: 13 IRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVS 72 Query: 148 SNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEI 180 ++ IS+ + + P + N+R + Sbjct: 73 AD-QISIVSYGKEKPAVLGHDEAAYSKNRRAVL 104 >d2aizp1 d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Haemophilus influenzae [TaxId: 727]} Length = 134 Score = 54.8 bits (131), Expect = 5e-09 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 88 LEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVS 147 + +++ +L A LN P+ + ++ +TD GT + N+ + Q RAD +K YL +GV Sbjct: 41 ITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVD 100 Query: 148 SNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEI 180 + + +V + + P + N+R + Sbjct: 101 AGKLGTV-SYGEEKPAVLGHDEAAYSKNRRAVL 132 >d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini [TaxId: 2094]} Length = 409 Score = 26.3 bits (57), Expect = 1.7 Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 3/52 (5%) Query: 46 SLDKA---EDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFVSEVFLEKKFLP 94 A +F +L+ I V + D++ + + +E+ Sbjct: 49 ESHDARKEHKQFVAELKANDINVVELIDLVAETYDLASQEAKDKLIEEFLED 100 >d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus, different strains [TaxId: 11520]} Length = 390 Score = 24.0 bits (52), Expect = 8.7 Identities = 7/16 (43%), Positives = 11/16 (68%) Query: 117 TDSIGTLKNNLLISQE 132 TD+ + NN+L +QE Sbjct: 135 TDTYHSYANNILRTQE 150 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.137 0.380 Gapped Lambda K H 0.267 0.0514 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 644,324 Number of extensions: 27525 Number of successful extensions: 62 Number of sequences better than 10.0: 1 Number of HSP's gapped: 62 Number of HSP's successfully gapped: 12 Length of query: 190 Length of database: 2,407,596 Length adjustment: 80 Effective length of query: 110 Effective length of database: 1,309,196 Effective search space: 144011560 Effective search space used: 144011560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.5 bits)