HHsearch alignment for GI: 254780954 and conserved domain: pfam01203

>pfam01203 GSPII_N Bacterial type II secretion system protein N.
Probab=94.88  E-value=0.22  Score=25.93  Aligned_cols=81  Identities=17%  Similarity=0.234  Sum_probs=49.0

Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCE
Q ss_conf             588-9999999999999999988552085887899999999982981999621489973631799942798268998760
Q gi|254780954|r    2 LRR-VLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFE   80 (380)
Q Consensus         2 mk~-ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~   80 (380)
T Consensus         1 Mk~~~~~~~l~~~~~l~~Li~~lPA~--------~v~~~~--~lp~~v~l~-gvsGTlW---~G~a~~v~~~---~----   59 (251)
T pfam01203         1 MKRKIVIGLLFVVAYLVFLLAHLPAR--------LVLSLA--PLPAGVSLS-GVSGTLW---QGRAKRVSWQ---N----   59 (251)
T ss_pred             CCEEEHHHHHHHHHHHHHHHHHHHHH--------HHHHHC--CCCCCEEEE-CCCCCEE---ECEEEEEEEC---C----
T ss_conf             94453137899999999999985799--------998517--799853894-5455657---1347388998---6----


Q ss_pred             EEEEEEEEEEEHHHHHCCCCCCC
Q ss_conf             67867999987026524971011
Q gi|254780954|r   81 SKIEGLSMRAEFLPLLSGEIRVF  103 (380)
Q Consensus        81 ~~~~~~~v~i~l~~Ll~~~~~i~  103 (380)
T Consensus        60 ~~lg~V~W~l~p~~Ll~G~~~~~   82 (251)
T pfam01203        60 LPLGRVSWSLSPLSLLTGRLKLD   82 (251)
T ss_pred             EECCEEEEEEEHHHHHCCCEEEE
T ss_conf             83200799962899717875899