RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62] (380 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 49.2 bits (117), Expect = 2e-06 Identities = 75/388 (19%), Positives = 116/388 (29%), Gaps = 178/388 (45%) Query: 6 LIGLGFL--FSVV--------------LVGAFT-------VPLFI----DWTDFREDFER 38 LIG+ L + V L GA T + I W E F Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVTAVAIAETDSW----ESFFV 294 Query: 39 QATLIVGKKIAVKG----GIKIHI------LPFPSVFFKDIRIDQKEDGSFESKIEGL-S 87 + A+ G++ + LP PS I D E+ EG+ S Sbjct: 295 SV------RKAITVLFFIGVRCYEAYPNTSLP-PS-----ILEDSLENN------EGVPS 336 Query: 88 MRAEFLPLLSGEIR-----VFDMYIDQPHLNFYL-SSKGVS----NWFQRKS------TM 131 P+LS I Y+++ N +L + K V N K+ Sbjct: 337 ------PMLS--ISNLTQEQVQDYVNK--TNSHLPAGKQVEISLVN--GAKNLVVSGPPQ 384 Query: 132 DMIH-NVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISP-----LS--ID 183 + N+ L K G +DQ ++ F S+ L+ S RFL + SP L D Sbjct: 385 SLYGLNLTLRKAKAPSG----LDQ--SRIPF-SERKLKFSNRFLPVASPFHSHLLVPASD 437 Query: 184 SIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAY--------------- 228 I ++ A ++I P+ Y Sbjct: 438 LINKDLVKNN----------VSFNAK--------DIQI---PV-YDTFDGSDLRVLSGSI 475 Query: 229 -PIIIDL--FGNLFWNEKQPIYSGVFSV--AGDF-----SKLLNLELSAKKSRLSGNFKI 278 I+D + W E + F DF S L L +++ Sbjct: 476 SERIVDCIIRLPVKW-ET----TTQFKATHILDFGPGGASGLGVL---THRNK------- 520 Query: 279 SDGN-VRISRYKLQSILP---NSSTDED 302 DG VR+ I+ + + D+D Sbjct: 521 -DGTGVRV-------IVAGTLDINPDDD 540 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 32.2 bits (72), Expect = 0.22 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 7/72 (9%) Query: 306 KVSQDEENLLNFSENGAESMHDLNETDFFEEEEKKNKNDDLKKDDIQYSVNKKEEKDNSH 365 +++Q+ E++ + E + + +L+ E+E + K KKD ++ N+++ + Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREK---AKKDLEEW--NQRQSEQVEK 133 Query: 366 DKENQENFSGDK 377 +K N N DK Sbjct: 134 NKIN--NRIADK 143 >1ia5_A Polygalacturonase; glycosylhydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Score = 28.0 bits (62), Expect = 3.9 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 23/118 (19%) Query: 100 IRVFDMYIDQPHLNFYLSSKGVSNWFQRKSTMDMIHNVILEKIHV----KGGRIK----- 150 + V + G+S + + + NV + G RIK Sbjct: 183 VAVNSGENIYFSGGYCSGGHGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNIDT 242 Query: 151 -----------IIDQESDQVYFLSDLNLQISARFLNIISPLS---IDSIKGSVIAEGT 194 I + + N ++ P++ +D++ GSV++ GT Sbjct: 243 TGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTTGVPITDFVLDNVHGSVVSSGT 300 >1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275 Score = 27.7 bits (61), Expect = 4.1 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 8/61 (13%) Query: 294 LPNSSTDEDNKTKVSQDEENLLNFSENGAESMHDLNETDFFEEEEKKNKNDDLKKDDIQY 353 LP + DE K +L+N + E +K+ K+ D K + Y Sbjct: 71 LPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEAD--------EATQKQAKDTDKSKAQVTY 122 Query: 354 S 354 S Sbjct: 123 S 123 >2waq_A DNA-directed RNA polymerase RPO1N subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_A 2pmz_A 3hkz_A Length = 880 Score = 27.8 bits (61), Expect = 4.7 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 1/107 (0%) Query: 274 GNFKISDGNVRISRYKLQSILPNSSTDEDNKTKVSQDEENLLNFSEN-GAESMHDLNETD 332 G KIS+ + +I + T+ + + G + E Sbjct: 102 GRVKISEDEIEKYSRIYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKP 161 Query: 333 FFEEEEKKNKNDDLKKDDIQYSVNKKEEKDNSHDKENQENFSGDKMI 379 + EE+K L DI+ + K E D + + MI Sbjct: 162 YNFYEERKEGVAKLTPSDIRERLEKVPESDVEILGYDPTTSRPEWMI 208 >1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.3.7.1 Length = 170 Score = 27.6 bits (61), Expect = 4.8 Identities = 8/43 (18%), Positives = 15/43 (34%) Query: 11 FLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGG 53 F F + G + + + W+ + V K + V G Sbjct: 119 FDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGS 161 >2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Length = 117 Score = 27.1 bits (59), Expect = 6.4 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 11/104 (10%) Query: 71 IDQKEDGSFESK---IEGLSMRAEFL--PLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWF 125 +D DG++E + L+++A L + EIR F + G S Sbjct: 3 VDTNNDGAYEGDELHMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERL 62 Query: 126 QRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQI 169 + V+ + G + + D V F SD L + Sbjct: 63 LSRVA------VLFPALRPGGFQAHYRAERGDLVAFSSDEELTM 100 >2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative, eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Length = 383 Score = 26.7 bits (58), Expect = 8.5 Identities = 8/24 (33%), Positives = 13/24 (54%) Query: 131 MDMIHNVILEKIHVKGGRIKIIDQ 154 M H+ LE I G ++++DQ Sbjct: 10 MSKPHHATLESIKYTPGSLRLLDQ 33 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.137 0.387 Gapped Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,186,416 Number of extensions: 151812 Number of successful extensions: 373 Number of sequences better than 10.0: 1 Number of HSP's gapped: 372 Number of HSP's successfully gapped: 19 Length of query: 380 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 286 Effective length of database: 3,414,294 Effective search space: 976488084 Effective search space used: 976488084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.4 bits)