RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780954|ref|YP_003065367.1| hypothetical protein
CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62]
         (380 letters)



>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 170

 Score = 26.8 bits (59), Expect = 3.0
 Identities = 8/43 (18%), Positives = 15/43 (34%)

Query: 11  FLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGG 53
           F F  +  G + +   + W+   +         V K + V G 
Sbjct: 119 FDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGS 161


>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
           [TaxId: 5664]}
          Length = 374

 Score = 26.3 bits (57), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 131 MDMIHNVILEKIHVKGGRIKIIDQ 154
           M   H+  LE I    G ++++DQ
Sbjct: 1   MSKPHHATLESIKYTPGSLRLLDQ 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,383,025
Number of extensions: 66420
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 6
Length of query: 380
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,213,086
Effective search space: 355434198
Effective search space used: 355434198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)