HHsearch alignment for GI: 254780955 and conserved domain: PRK11798
>PRK11798 ClpXP protease specificity-enhancing factor; Provisional.
Probab=98.01 E-value=0.00018 Score=49.87 Aligned_cols=94 Identities=15% Similarity=0.274 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEE---ECCEEECCCEEEEEEEECCEEEEE
Q ss_conf 99999999997089998746999984588887759899963975379984311---218076454799999849876689
Q gi|254780955|r 43 LVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQ---FWDLKVLDNHFEVGLSFSNVPERL 119 (204)
Q Consensus 43 Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhq---f~dL~V~~~~FsV~LsF~g~~e~L 119 (204)
T Consensus 11 LiRA~yeW~~Dn~~-----TPyi~V~a~~~~v~VP~~~v----~dg~IvLNIsp~Av~~L~i~nd~isF~ARF~G~~~~i 81 (140)
T PRK11798 11 LLRALYEWLVDNGL-----TPHLLVDATYPGVQVPMEYV----KDGQIVLNISPRAVGNLQLDNDAISFNARFGGVPRQI 81 (140)
T ss_pred HHHHHHHHHHHCCC-----CCEEEEEECCCCCCCCHHHC----CCCEEEEECCHHHHHCEEECCCEEEEEEEECCEEEEE
T ss_conf 89999999972899-----85499981799966898880----1998999779888603077587899987979915899
Q ss_pred EEEHHHHEEEECCCCCEEEEECCCCC
Q ss_conf 98442420230677530356034676
Q gi|254780955|r 120 VIPFNAIKGFYDPSVNFELEFDVHIE 145 (204)
Q Consensus 120 ~IPf~AIt~F~DPSV~FgLqF~~~~~ 145 (204)
T Consensus 82 ~vP~~aV~aIyArEnG~Gm~F~~E~~ 107 (140)
T PRK11798 82 YVPIAAVLAIYARENGQGMMFEPEAA 107 (140)
T ss_pred EEEHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 97789964253010378754488766