HHsearch alignment of GI: 254780955 and MMDB domain: 2nys_A_
>2nys_A (A:) AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=0 Score=488.76 Aligned_cols=166 Identities=58% Similarity=0.943 Sum_probs=141.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCE
Q ss_conf 22104989999999999999999999970899987469999845888877598999639753799843112180764547
Q gi|254780955|r 26 NYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNH 105 (204)
Q Consensus 26 ~~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~ 105 (204)
++|+|+|++||++|||||||+||..|++.|+|||+|||||||+|++|||+||+|||+|||+|||||||||||||+|++++
T Consensus 2 a~d~I~Y~~l~~~AlrgVVr~vL~~va~~g~LPG~HHFyITF~T~~pGV~l~~~L~~~YP~EMTIVLQHQF~dL~V~e~~ 81 (176)
T 2nys_A 2 GQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQXTIVIQHQFWDXKVTETG 81 (176)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTTCBCCHHHHHHSSSEEEEEESSSCEEEEECSSE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEHHHHHCCEEEECCE
T ss_conf 73405799999999999999999999983979988679999965999958899998609843778636553230781364
Q ss_pred EEEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999849876689984424202306775303560346766543344456544444565566433444444455566555
Q gi|254780955|r 106 FEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTK 185 (204)
Q Consensus 106 FsV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (204)
|||+|||||+||+|+|||+||++|+||||+|||||++..+.+++..+...... ..........+.++
T Consensus 82 FsV~LsFgg~pE~L~IPf~AI~~F~DPsv~F~L~Fe~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 148 (176)
T 2nys_A 82 FEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAKEEEXEEAEITAY-------------PVSHEAKPASETPK 148 (176)
T ss_dssp EEEEEEETTEEEEEEEEGGGEEEEEEGGGTEEEECCCC------------------------------------------
T ss_pred EEEEEEECCEEEEEEEEHHHHHEEECCCCCCCEECCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCC
T ss_conf 89999759986999988688236267677864321886654444456666667-------------76655577767887
Q ss_pred CCCCCCCCCEEEEEECCCC
Q ss_conf 6665677728983100269
Q gi|254780955|r 186 KQNKNKMASVISLDNFRKK 204 (204)
Q Consensus 186 ~~~~~~~aeVVSLD~FRKK 204 (204)
.....++|+|||||+||||
T Consensus 149 ~~~~~~~a~VVsLD~FRKK 167 (176)
T 2nys_A 149 SGEEKKEGSVVSLDAFRKK 167 (176)
T ss_dssp -------------------
T ss_pred CCCCCCCCCEEEECCCCCC
T ss_conf 8787888999971310267