Query gi|254780955|ref|YP_003065368.1| hypothetical protein CLIBASIA_04270 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 204
No_of_seqs 127 out of 261
Neff 4.1
Searched_HMMs 33803
Date Wed Jun 1 19:19:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780955.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2nys_A AGR_C_3712P; SSPB, str 100.0 0 0 488.8 15.5 166 26-204 2-167 (176)
2 >2qas_A SSPB, hypothetical pro 100.0 0 0 432.4 14.9 128 22-149 6-133 (157)
3 >1yfn_A Stringent starvation p 99.9 6.9E-28 2E-32 201.6 6.0 99 45-148 11-112 (118)
4 >1ou9_A Stringent starvation p 99.9 4E-25 1.2E-29 183.7 11.1 98 42-148 11-111 (129)
5 >1ou8_A Stringent starvation p 99.9 1.4E-23 4.3E-28 173.6 11.3 95 42-145 11-108 (111)
6 >2bw2_A Bypass of forespore C; 51.8 13 0.0004 17.8 3.0 28 82-109 5-32 (67)
7 >3d3z_A Actibind; RNAse, hydro 43.1 11 0.00033 18.3 1.4 21 89-109 28-51 (163)
8 >1ixm_A SPO0B, protein (sporul 35.9 31 0.0009 15.5 9.0 76 27-113 54-145 (145)
9 >2hza_A Nickel-responsive regu 31.1 37 0.0011 15.0 4.3 58 38-105 4-61 (107)
10 >2vfx_A Mitotic spindle assemb 25.3 46 0.0014 14.3 7.1 42 30-71 119-160 (206)
11 >2iaf_A Hypothetical protein S 24.1 9.2 0.00027 18.9 -1.6 65 45-109 75-139 (151)
12 >1fr2_A Colicin E9 immunity pr 22.9 51 0.0015 14.1 2.6 36 23-59 46-82 (86)
13 >2f5v_A Pyranose 2-oxidase; fl 22.7 19 0.00057 16.8 -0.2 39 54-96 5-43 (47)
14 >1gxg_A Colicin E8 immunity pr 22.3 53 0.0016 14.0 2.6 36 23-59 45-81 (85)
15 >2qk4_A Trifunctional purine b 20.3 58 0.0017 13.7 4.5 43 33-76 18-60 (104)
No 1
>>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} (A:)
Probab=100.00 E-value=0 Score=488.76 Aligned_cols=166 Identities=58% Similarity=0.943 Sum_probs=141.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCE
Q ss_conf 22104989999999999999999999970899987469999845888877598999639753799843112180764547
Q gi|254780955|r 26 NYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNH 105 (204)
Q Consensus 26 ~~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~ 105 (204)
++|+|+|++||++|||||||+||..|++.|+|||+|||||||+|++|||+||+|||+|||+|||||||||||||+|++++
T Consensus 2 a~d~I~Y~~l~~~AlrgVVr~vL~~va~~g~LPG~HHFyITF~T~~pGV~l~~~L~~~YP~EMTIVLQHQF~dL~V~e~~ 81 (176)
T 2nys_A 2 GQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQXTIVIQHQFWDXKVTETG 81 (176)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTTCBCCHHHHHHSSSEEEEEESSSCEEEEECSSE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEHHHHHCCEEEECCE
T ss_conf 73405799999999999999999999983979988679999965999958899998609843778636553230781364
Q ss_pred EEEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999849876689984424202306775303560346766543344456544444565566433444444455566555
Q gi|254780955|r 106 FEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTK 185 (204)
Q Consensus 106 FsV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (204)
|||+|||||+||+|+|||+||++|+||||+|||||++..+.+++..+...... ..........+.++
T Consensus 82 FsV~LsFgg~pE~L~IPf~AI~~F~DPsv~F~L~Fe~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 148 (176)
T 2nys_A 82 FEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAKEEEXEEAEITAY-------------PVSHEAKPASETPK 148 (176)
T ss_dssp EEEEEEETTEEEEEEEEGGGEEEEEEGGGTEEEECCCC------------------------------------------
T ss_pred EEEEEEECCEEEEEEEEHHHHHEEECCCCCCCEECCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCC
T ss_conf 89999759986999988688236267677864321886654444456666667-------------76655577767887
Q ss_pred CCCCCCCCCEEEEEECCCC
Q ss_conf 6665677728983100269
Q gi|254780955|r 186 KQNKNKMASVISLDNFRKK 204 (204)
Q Consensus 186 ~~~~~~~aeVVSLD~FRKK 204 (204)
.....++|+|||||+||||
T Consensus 149 ~~~~~~~a~VVsLD~FRKK 167 (176)
T 2nys_A 149 SGEEKKEGSVVSLDAFRKK 167 (176)
T ss_dssp -------------------
T ss_pred CCCCCCCCCEEEECCCCCC
T ss_conf 8787888999971310267
No 2
>>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function, hydrolase activator; 2.55A {Caulobacter vibrioides} PDB: 2qaz_A (A:)
Probab=100.00 E-value=0 Score=432.35 Aligned_cols=128 Identities=45% Similarity=0.770 Sum_probs=121.5
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEE
Q ss_conf 22202210498999999999999999999997089998746999984588887759899963975379984311218076
Q gi|254780955|r 22 DTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKV 101 (204)
Q Consensus 22 ~~~M~~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V 101 (204)
+..|++|+|+|++|+|+|||||||+||..|++.++|||+|||||||+|++|||+||+|||+|||+|||||||||||||+|
T Consensus 6 ~~~~~~d~I~Y~~l~~~AlrgVvr~vL~~va~~~glPg~hHFyItF~T~~pgV~l~~~L~~~YP~eMTIVLQhQF~dL~V 85 (157)
T 2qas_A 6 QTEPPEDLMQYEAMAQDALRGVVKAALKKAAAPGGLPEPHHLYITFKTKAAGVSGPQDLLSKYPDEMTIVLQHQYWDLAP 85 (157)
T ss_dssp ---CCCCTTCHHHHHHHHHHHHHHHHHHHHSSTTCSCTTCCEEEEEETTSTTCBCCHHHHHHSSSEEEEEESSSCEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEEEEECCCEE
T ss_conf 78983120278999999999999999999887369998728999996599996278999975977029987201221144
Q ss_pred CCCEEEEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECCCCCCCCC
Q ss_conf 454799999849876689984424202306775303560346766543
Q gi|254780955|r 102 LDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEE 149 (204)
Q Consensus 102 ~~~~FsV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~~~~~~~~ 149 (204)
++++|||+|||||+||+|+|||+||++|+||||+|||||++.....++
T Consensus 86 ~~~~FsV~LsF~g~pE~L~IPf~AI~~F~DPsv~F~L~F~~~~~~e~~ 133 (157)
T 2qas_A 86 GETFFSVTLKFGGQPKRLSVPYAALTRFYDPSVQFALQFSAPEIIEDE 133 (157)
T ss_dssp CSSEEEEEEEETTEEEEEEEEGGGEEEEEETTTTEEEECSCCC-----
T ss_pred CCCEEEEEEEECCEEEEEEEEHHHHHCCCCCCCCEEEEECCCCCCCCC
T ss_conf 376799999819904789978688210228887748987677665555
No 3
>>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} (A:)
Probab=99.94 E-value=6.9e-28 Score=201.64 Aligned_cols=99 Identities=15% Similarity=0.255 Sum_probs=89.1
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEE---EEEECCEEECCCEEEEEEEECCEEEEEEE
Q ss_conf 999999997089998746999984588887759899963975379984---31121807645479999984987668998
Q gi|254780955|r 45 KVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVI---QNQFWDLKVLDNHFEVGLSFSNVPERLVI 121 (204)
Q Consensus 45 r~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVl---Qhqf~dL~V~~~~FsV~LsF~g~~e~L~I 121 (204)
--.|+-+.+.+ |+|+|||||+|+|++|||++|+ +||++||||| |||||||.|++++||++|+|||+|+.|+|
T Consensus 11 pyllra~~~w~-ld~~~tpyI~v~~~~~gV~vP~----~y~~~~~IVLnis~~a~~~L~i~~d~isf~~rF~G~~~~i~V 85 (118)
T 1yfn_A 11 PYLLRAFYEWL-LDNQLTPHLVVDVTLPGVQVPM----EYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSV 85 (118)
T ss_dssp HHHHHHHHHHH-HHTTCCEEEEEETTSTTCBSCG----GGCBTTEEEEECSGGGCEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHH-HHCCCCCEEEEEECCCCCCCCH----HHCCCCEEEEECCHHCCCCEEECCCEEEEEEEECCEEEEEEE
T ss_conf 18899999999-8789985799994899976897----990698399985821127868806889999998992189998
Q ss_pred EHHHHEEEECCCCCEEEEECCCCCCCC
Q ss_conf 442420230677530356034676654
Q gi|254780955|r 122 PFNAIKGFYDPSVNFELEFDVHIEHIE 148 (204)
Q Consensus 122 Pf~AIt~F~DPSV~FgLqF~~~~~~~~ 148 (204)
||+||++|+||+++|||+|+...+.++
T Consensus 86 P~~AI~~i~~~e~g~Gm~F~~~~~~~~ 112 (118)
T 1yfn_A 86 PLAAVLAIYARENGAGTMFEPEAAYDE 112 (118)
T ss_dssp EGGGEEEEEETTTCCEEECCCCTTTC-
T ss_pred EHHHHHEHEECCCCCCEECCCCCCCCC
T ss_conf 679952230114588613598777888
No 4
>>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} (A:)
Probab=99.92 E-value=4e-25 Score=183.66 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEE---EEECCEEECCCEEEEEEEECCEEEE
Q ss_conf 9999999999970899987469999845888877598999639753799843---1121807645479999984987668
Q gi|254780955|r 42 GLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQ---NQFWDLKVLDNHFEVGLSFSNVPER 118 (204)
Q Consensus 42 ~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQ---hqf~dL~V~~~~FsV~LsF~g~~e~ 118 (204)
-++|.++.-+..+| +++||+|+|++|||.+|+ +||++|||||| |++|||.|++++|+++|+|||+|+.
T Consensus 11 yliRa~y~w~~dn~-----~tPyI~v~a~~pgV~VP~----~y~~d~~IVLnis~~a~~~L~i~~d~isf~arFgGv~~~ 81 (129)
T 1ou9_A 11 YLLRAYYDWLVDNS-----FTPYLVVDATYLGVNVPV----EYVKDGQIVLNLSASATGNLQLTNDFIQFNARFKGVSRE 81 (129)
T ss_dssp HHHHHHHHHHHHTT-----CCEEEEEETTSTTCBSCG----GGCBTTEEEEECCTTTCEEEEECSSEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHCC-----CCCEEEEEECCCCCCCCH----HHCCCCEEEEECCHHHCCCEEEECCEEEEEEEECCEEEE
T ss_conf 71999999998788-----986799996899848846----848799899980842214748847899999998998689
Q ss_pred EEEEHHHHEEEECCCCCEEEEECCCCCCCC
Q ss_conf 998442420230677530356034676654
Q gi|254780955|r 119 LVIPFNAIKGFYDPSVNFELEFDVHIEHIE 148 (204)
Q Consensus 119 L~IPf~AIt~F~DPSV~FgLqF~~~~~~~~ 148 (204)
|+|||+||++|+||+++|||+|+.....++
T Consensus 82 i~VP~~AV~aiya~e~g~Gl~F~~~~~~~~ 111 (129)
T 1ou9_A 82 LYIPXGAALAIYARENGDGVXFEPEEIYDE 111 (129)
T ss_dssp EEEEGGGEEEEEETTTCCEEECCCCTHHHH
T ss_pred EEEEHHHEEEEECCCCCCEEECCCCCCCCC
T ss_conf 999847737987465686066288667765
No 5
>>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} (A:)
Probab=99.90 E-value=1.4e-23 Score=173.57 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEE---EEECCEEECCCEEEEEEEECCEEEE
Q ss_conf 9999999999970899987469999845888877598999639753799843---1121807645479999984987668
Q gi|254780955|r 42 GLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQ---NQFWDLKVLDNHFEVGLSFSNVPER 118 (204)
Q Consensus 42 ~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQ---hqf~dL~V~~~~FsV~LsF~g~~e~ 118 (204)
-++|.++.-+..+| +..||+|+|++|||.+|+ +||+||||||| ||+|||.|++++||++|+|||+++.
T Consensus 11 ylira~y~w~~dn~-----~tPyI~v~~~~~gV~VP~----~y~~d~~IVLnis~~a~~~L~i~~d~isf~arF~Gv~~~ 81 (111)
T 1ou8_A 11 YLLRAYYDWLVDNS-----FTPYLVVDATYLGVNVPV----EYVKDGQIVLNLSASATGNLQLTNDFIQFNARFKGVSRE 81 (111)
T ss_dssp HHHHHHHHHHHHTT-----CCEEEEEETTSTTCBCCG----GGCBTTEEEEECSTTTCEEEEECSSEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHCC-----CCCEEEEEECCCCCCCCH----HHCCCCEEEEECCHHHHCCEEEECCEEEEEEEECCCCEE
T ss_conf 73999999998689-----986799983899981897----883299799986854320678807799999998991289
Q ss_pred EEEEHHHHEEEECCCCCEEEEECCCCC
Q ss_conf 998442420230677530356034676
Q gi|254780955|r 119 LVIPFNAIKGFYDPSVNFELEFDVHIE 145 (204)
Q Consensus 119 L~IPf~AIt~F~DPSV~FgLqF~~~~~ 145 (204)
|+|||+||++|+||++++||+|+....
T Consensus 82 i~VP~~AV~ai~a~e~g~Gm~F~~~~~ 108 (111)
T 1ou8_A 82 LYIPMGAALAIYARENGDGVMFEPEEI 108 (111)
T ss_dssp EEEEGGGEEEEEETTTCCEEECCCCGG
T ss_pred EEEEHHHHHEHEECCCCCCCEECCCCC
T ss_conf 998679941320104588501088766
No 6
>>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak checkpoint; NMR {Bacillus subtilis} (A:1-67)
Probab=51.82 E-value=13 Score=17.83 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=22.4
Q ss_pred HHCCCEEEEEEEEEECCEEECCCEEEEE
Q ss_conf 6397537998431121807645479999
Q gi|254780955|r 82 KNYPEKMTIVIQNQFWDLKVLDNHFEVG 109 (204)
Q Consensus 82 ~~yP~emTIVlQhqf~dL~V~~~~FsV~ 109 (204)
++-|..|||+|+.+|-|=.|+++...=+
T Consensus 5 ~~~p~~vtv~LEr~YlDGeVseE~~~Et 32 (67)
T 2bw2_A 5 HYEPLQVHVQLEKVYLDGDVSIEHKHEK 32 (67)
T ss_dssp EEEEEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ECCCCEEEEEEEEEEECCCEEHHHHCCC
T ss_conf 3478447999999984262111132179
No 7
>>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger} (A:1-66,A:151-247)
Probab=43.09 E-value=11 Score=18.34 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=13.7
Q ss_pred EEEEEEEECCEEEC---CCEEEEE
Q ss_conf 99843112180764---5479999
Q gi|254780955|r 89 TIVIQNQFWDLKVL---DNHFEVG 109 (204)
Q Consensus 89 TIVlQhqf~dL~V~---~~~FsV~ 109 (204)
-++||-||||-.-. ++.|.|-
T Consensus 28 g~~l~tqfwd~~~~~~p~~~~tiH 51 (163)
T 3d3z_A 28 GSLLQTQFWDYDPSDGPSDSWTIH 51 (163)
T ss_dssp CEEEEEEECCBTTBCSCTTCCEEE
T ss_pred CCEEEEEECCCCCCCCCCCCCEEC
T ss_conf 726677641578888987681564
No 8
>>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} (A:48-192)
Probab=35.92 E-value=31 Score=15.51 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=48.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC--C--------------CCCHHHHHHCCCEEEE
Q ss_conf 21049899999999999999999999708999874699998458888--7--------------7598999639753799
Q gi|254780955|r 27 YDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARG--V--------------RISQNLRKNYPEKMTI 90 (204)
Q Consensus 27 ~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~g--V--------------~ip~~L~~~yP~emTI 90 (204)
.|+-.||.. |...+++.+......-..-|+.|..||+.+.+++ + .+-+||+..+|. +-+
T Consensus 54 ~dls~~D~~----L~~~~~~ff~~l~~~~~~~~eNhl~iti~~~~~~~~~~lffDf~G~l~~~e~l~~~l~~~~~~-v~~ 128 (145)
T 1ixm_A 54 KDLSAYDQK----LAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYED-VDI 128 (145)
T ss_dssp CCCTTTHHH----HHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC------------E
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHCCCCC-CCE
T ss_conf 023468889----999999999999998763146640599996056768999999437983989999998532244-510
Q ss_pred EEEEEECCEEECCCEEEEEEEEC
Q ss_conf 84311218076454799999849
Q gi|254780955|r 91 VIQNQFWDLKVLDNHFEVGLSFS 113 (204)
Q Consensus 91 VlQhqf~dL~V~~~~FsV~LsF~ 113 (204)
+. -.++++-+++.|.++
T Consensus 129 ~~------~~~~e~E~~~~l~~~ 145 (145)
T 1ixm_A 129 MR------FEITSHECLIEIGLD 145 (145)
T ss_dssp EE------EEECSSEEEEEEEC-
T ss_pred EE------EEEECCCEEEEECCC
T ss_conf 37------888636368996569
No 9
>>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, metal binding protein; HET: 3CM; 2.10A {Escherichia coli} (A:27-133)
Probab=31.10 E-value=37 Score=15.01 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCE
Q ss_conf 99999999999999970899987469999845888877598999639753799843112180764547
Q gi|254780955|r 38 EALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNH 105 (204)
Q Consensus 38 ~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~ 105 (204)
+|.|..+|+.|..-.... -.|.-.=.||..-+|..-.+...|.+ +||+|.|+.++..+
T Consensus 4 eaIRd~iR~~l~e~~~~~-~~~~~~G~i~~vydh~~~~l~~~l~~---------iqH~~~~~I~s~~H 61 (107)
T 2hza_A 4 EAIRDILRSALAQEATQQ-HGTQGFAVLSYVYEHEKRDLASRIVS---------TQHHHHDLSVATLH 61 (107)
T ss_dssp HHHHHHHHHHHHHHHHTC-TTCEEEEEEEEEEESSTTSHHHHHHH---------HHHHTTTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHC-CCCCEEEEEEEEEECCCCCHHHHHHH---------HHHCCCCEEEEEEE
T ss_conf 999999999998865345-89807999999996786238899999---------88615253999988
No 10
>>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, cell division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 1klq_A 2v64_D 1duj_A (A:)
Probab=25.25 E-value=46 Score=14.35 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 498999999999999999999997089998746999984588
Q gi|254780955|r 30 IRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNA 71 (204)
Q Consensus 30 i~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~ 71 (204)
-.-..-+++++|+++|+....++.-..||.++.|-|...|..
T Consensus 119 ~~~~~~i~~~~~~~lr~l~~~~~~L~~Lp~~~~f~i~l~~~~ 160 (206)
T 2vfx_A 119 EKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDK 160 (206)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHTTSCCCCSCEEEEEEEEECT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC
T ss_conf 457999999999999999999851889999858999999378
No 11
>>2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics, L-serine dehydratase, protein structure initiative; 2.05A {Legionella pneumophila} (A:)
Probab=24.13 E-value=9.2 Score=18.90 Aligned_cols=65 Identities=11% Similarity=0.023 Sum_probs=38.7
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCEEEEE
Q ss_conf 99999999708999874699998458888775989996397537998431121807645479999
Q gi|254780955|r 45 KVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVG 109 (204)
Q Consensus 45 r~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~FsV~ 109 (204)
-..+..+.+.+.|.-....-|.|.-...=+-.+......+|+-|+|.+-..=-.+..+..+|||+
T Consensus 75 ~~~~~~i~~~~~l~l~~~~~i~f~~~~di~f~~~~~lp~HpN~m~~~a~~~~g~~l~~~tyySIG 139 (151)
T 2iaf_A 75 IPRXHEILDSNLLNLAGKKEIPFHEATDFLFLQKELLPKHSNGXRFSAFDGNANLLIEQVYYSIG 139 (151)
T ss_dssp HHHHHHHHHHTEEEETTTEEEECCHHHHEEEETTCCCSSCSSEEEEEEECTTSCEEEEEEEEECS
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEECC
T ss_conf 89999998638230155542234524540450464689999834999987999889989999838
No 12
>>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} (A:)
Probab=22.86 E-value=51 Score=14.06 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=24.9
Q ss_pred CCCHHHHCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 22022104989-99999999999999999997089998
Q gi|254780955|r 23 TLMNYDHIRYD-ILAKEALRGLVKVVLSEVASIGSLPG 59 (204)
Q Consensus 23 ~~M~~Dli~Y~-~l~~~Alr~Vvr~~L~~v~~~g~LpG 59 (204)
-|-..|||=|- .-.+++=-|||+.|++--+++| +||
T Consensus 46 HP~gsDLIfyP~~~~e~sPEgIv~~ik~WRa~nG-kpg 82 (86)
T 1fr2_A 46 HPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANG-KSG 82 (86)
T ss_dssp CTTTTHHHHSCCTTCCCSHHHHHHHHHHHHHHTT-CCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCC-CCC
T ss_conf 8777862556877887782489999999999728-532
No 13
>>2f5v_A Pyranose 2-oxidase; flavoprotein, rossmann-fold, PHBH-fold, GMC oxidoreductase, glutathion-reductase related fold, tetramer; HET: KBG FAD PG4; 1.41A {Peniophora SP} (A:351-397)
Probab=22.70 E-value=19 Score=16.80 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=32.6
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEE
Q ss_conf 0899987469999845888877598999639753799843112
Q gi|254780955|r 54 IGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQF 96 (204)
Q Consensus 54 ~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf 96 (204)
.| -||+--+-+|+-..++..+-|||-.++--.-| +|||=
T Consensus 5 ~g-~pg~~~ysv~ytpg~~~nkhpdwwnekv~~hm---m~hqe 43 (47)
T 2f5v_A 5 RG-TPGELTYSVTYTPGASTNKHPDWWNEKVKNHM---MQHQE 43 (47)
T ss_dssp ES-CTTSTTCEEECCTTCTTCSSCHHHHHHHHHHH---HHCTT
T ss_pred CC-CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---CCCCC
T ss_conf 55-30122321135666664335530013443454---22234
No 14
>>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} (A:)
Probab=22.26 E-value=53 Score=13.98 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=25.2
Q ss_pred CCCHHHHCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 22022104989-99999999999999999997089998
Q gi|254780955|r 23 TLMNYDHIRYD-ILAKEALRGLVKVVLSEVASIGSLPG 59 (204)
Q Consensus 23 ~~M~~Dli~Y~-~l~~~Alr~Vvr~~L~~v~~~g~LpG 59 (204)
-|-..|||=|- .-.+..=-|||+.|++--+++| +||
T Consensus 45 HP~gsDLIfyP~~~~e~sPegIv~~ik~WRa~nG-kpg 81 (85)
T 1gxg_A 45 HPSGSDLIYYPEGNNDGSPEAVIKEIKEWRAANG-KSG 81 (85)
T ss_dssp CTTTTHHHHSCCTTCCSSHHHHHHHHHHHHHHTT-CCC
T ss_pred CCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCC-CCC
T ss_conf 8777862556788888885899999999999728-532
No 15
>>2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} (A:215-228,A:263-352)
Probab=20.30 E-value=58 Score=13.72 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 99999999999999999999708999874699998458888775
Q gi|254780955|r 33 DILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRI 76 (204)
Q Consensus 33 ~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~i 76 (204)
+.+.++.++.+++.+|+..++.| +|=.-..|+-+.-+..|.++
T Consensus 18 ~e~~~~i~~~Ii~Ptl~~l~~eG-~~y~GvLY~GlMit~~GPkV 60 (104)
T 2qk4_A 18 NDLLLKIKDTVLQRTVDGMQQEG-TPYTGILYAGIMLTKNGPKV 60 (104)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTT-CCCCEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEEEEEECCCCEE
T ss_conf 57899999998999999987669-96388852037985178679
Done!