HHSEARCH alignment of GI: 254780955 and SCOP domain: d1yfna1

Alignment

Probab=98.47  E-value=9.5e-07  Score=61.74  Aligned_cols=94  Identities=12%  Similarity=0.252  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEE-CCEEECCCEEEEEEEECCEEEEEEE
Q ss_conf             999999999970899987469999845888877598999639753799843112-1807645479999984987668998
Q gi|254780955|r   43 LVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQF-WDLKVLDNHFEVGLSFSNVPERLVI  121 (204)
Q Consensus        43 Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf-~dL~V~~~~FsV~LsF~g~~e~L~I  121 (204)
                      ++|....=+..+|+     -=||.-.+..+||.+|....+  -.+|+.-|-.+- .||.++++..|-...|||++..+.|
T Consensus        10 liRA~y~W~~Dn~~-----TPyl~Vda~~~~v~VP~~~v~--dg~IvLNIsp~Av~~L~i~nd~IsF~aRF~G~~~~i~v   82 (108)
T d1yfna1          10 LLRAFYEWLLDNQL-----TPHLVVDVTLPGVQVPMEYAR--DGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSV   82 (108)
T ss_dssp             HHHHHHHHHHHTTC-----CEEEEEETTSTTCBSCGGGCB--TTEEEEECSGGGCEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHCCC-----CCEEEEEECCCCCCCCHHHCC--CCEEEEECCHHHCCCEEECCCEEEEEEEECCEEEEEEE
T ss_conf             39999999987899-----877999948999769979906--98399986832014778807789999998993289998


Q ss_pred             EHHHHEEEECCCCCEEEEECCC
Q ss_conf             4424202306775303560346
Q gi|254780955|r  122 PFNAIKGFYDPSVNFELEFDVH  143 (204)
Q Consensus       122 Pf~AIt~F~DPSV~FgLqF~~~  143 (204)
                      |+.||.+-+....+-|+-|+..
T Consensus        83 P~~AV~aIyarEnG~Gm~F~~e  104 (108)
T d1yfna1          83 PLAAVLAIYARENGAGTMFEPE  104 (108)
T ss_dssp             EGGGEEEEEETTTCCEEECCCC
T ss_pred             EHHHHHEEEECCCCCCCCCCCC
T ss_conf             7798413211055887434888

SCOP domain information

class: All beta proteins
fold: SspB-like
superfamily: SspB-like
family: Stringent starvation protein B, SspB
domain: Stringent starvation protein B, SspB
species: Escherichia coli [TaxId: 562]