RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780955|ref|YP_003065368.1| hypothetical protein
CLIBASIA_04270 [Candidatus Liberibacter asiaticus str. psy62]
(204 letters)
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG,
ATR88, structural genomics, PSI-2, protein structure
initiative; 2.70A {Agrobacterium tumefaciens str} (A:)
Length = 176
Score = 221 bits (565), Expect = 5e-59
Identities = 97/177 (54%), Positives = 122/177 (68%), Gaps = 13/177 (7%)
Query: 28 DHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEK 87
DHIRYDILA++ALRG+++ VL EVA+ G LPG+HHF+ITF T A GVRISQ+L+ Y E+
Sbjct: 4 DHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQ 63
Query: 88 MTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHI 147
TIVIQ+QFWD KV + FE+GLSFS+ PE+LVIP+NAI+GFYDPSVNFELEFDV +
Sbjct: 64 XTIVIQHQFWDXKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAKE 123
Query: 148 EEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNKNKMASVISLDNFRKK 204
EE E T P + + + + +KK SV+SLD FRKK
Sbjct: 124 EEXEEAEIT----AYPVSHEAKPASETPKSGEEKKE---------GSVVSLDAFRKK 167
>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown
function, hydrolase activator; 2.55A {Caulobacter
vibrioides} PDB: 2qaz_A (A:)
Length = 157
Score = 207 bits (528), Expect = 1e-54
Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Query: 22 DTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLR 81
T D ++Y+ +A++ALRG+VK L + A+ G LP HH YITF T A GV Q+L
Sbjct: 6 QTEPPEDLMQYEAMAQDALRGVVKAALKKAAAPGGLPEPHHLYITFKTKAAGVSGPQDLL 65
Query: 82 KNYPEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFD 141
YP++MTIV+Q+Q+WDL + F V L F P+RL +P+ A+ FYDPSV F L+F
Sbjct: 66 SKYPDEMTIVLQHQYWDLAPGETFFSVTLKFGGQPKRLSVPYAALTRFYDPSVQFALQFS 125
Query: 142 VHIEHIEEKLEG 153
E IE++ E
Sbjct: 126 -APEIIEDEPEP 136
>1yfn_A Stringent starvation protein B; protein-peptide complex,
SSPB, RSEA, protein binding; 1.80A {Escherichia coli}
(A:)
Length = 118
Score = 105 bits (264), Expect = 4e-24
Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 8/114 (7%)
Query: 39 ALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVI---QNQ 95
L +L L + ++ GV++ Y IV+
Sbjct: 5 QLTPRRPYLLRAFYEWL-LDNQLTPHLVVDVTLPGVQVPME----YARDGQIVLNIAPRA 59
Query: 96 FWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEE 149
+L++ ++ F +P ++ +P A+ Y F+ + E+
Sbjct: 60 VGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDED 113
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding
protein, homodimer, transport protein; 1.80A
{Haemophilus influenzae} (A:)
Length = 129
Score = 98.2 bits (245), Expect = 6e-22
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 60 EHHFYITFATNARGVRISQNLRKNYPEKMTIVIQ---NQFWDLKVLDNHFEVGLSFSNVP 116
Y+ GV + Y + IV+ + +L++ ++ + F V
Sbjct: 24 SFTPYLVVDATYLGVNVPVE----YVKDGQIVLNLSASATGNLQLTNDFIQFNARFKGVS 79
Query: 117 ERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEE 149
L IP A Y + F+ + E
Sbjct: 80 RELYIPXGAALAIYARENGDGVXFEPEEIYDEL 112
>1ou8_A Stringent starvation protein B homolog; peptide-binding
pocket, protein-peptide complex, homodimer, transport
protein; 1.60A {Haemophilus influenzae} (A:)
Length = 111
Score = 94.7 bits (236), Expect = 8e-21
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 60 EHHFYITFATNARGVRISQNLRKNYPEKMTIVIQ---NQFWDLKVLDNHFEVGLSFSNVP 116
Y+ GV + Y + IV+ + +L++ ++ + F V
Sbjct: 24 SFTPYLVVDATYLGVNVPVE----YVKDGQIVLNLSASATGNLQLTNDFIQFNARFKGVS 79
Query: 117 ERLVIPFNAIKGFYDPSVNFELEFDV 142
L IP A Y + F+
Sbjct: 80 RELYIPMGAALAIYARENGDGVMFEP 105
>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics,
PSI-2, protein structure initiative; 2.40A
{Agrobacterium tumefaciens str} (A:1-68,A:193-323)
Length = 199
Score = 27.2 bits (60), Expect = 1.6
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 32 YDILAKEALRGLVKVVLSEVASIGSLP 58
D LA +AL + + + + +
Sbjct: 89 LDFLADDALAQVFRTTFNLPDAFAAAD 115
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase,
reverse transcriptase, transferase, replication; 3.00A
{Moloney murine leukemia virus} (A:303-455)
Length = 153
Score = 26.3 bits (58), Expect = 3.0
Identities = 2/16 (12%), Positives = 9/16 (56%)
Query: 17 IIKWIDTLMNYDHIRY 32
+ + L++ D +++
Sbjct: 136 MTHYQALLLDTDRVQF 151
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A
{Streptococcus agalactiae} (A:149-238)
Length = 90
Score = 25.8 bits (57), Expect = 5.1
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 3/22 (13%)
Query: 5 WNFFSSRWQWFFIIKWIDTLMN 26
W + + I ID L+N
Sbjct: 12 WGELGYKEHYRLI---IDCLLN 30
>3ihj_A Alanine aminotransferase 2; helix, structural genomics,
structural genomics consortium, SGC, alternative
splicing, pyridoxal phosphate; HET: PLP; 2.30A {Homo
sapiens} (A:41-69,A:370-498)
Length = 158
Score = 25.7 bits (56), Expect = 5.1
Identities = 9/81 (11%), Positives = 21/81 (25%), Gaps = 5/81 (6%)
Query: 12 WQWFFIIKWIDTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATN- 70
+ FI + D+ L + + + G G +HF +T
Sbjct: 77 FPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPV 136
Query: 71 ---ARGV-RISQNLRKNYPEK 87
+ ++ +
Sbjct: 137 EKLKTVLQKVKDFHINFLEKY 157
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase;
HET: PMT; 2.30A {Escherichia coli} (A:)
Length = 226
Score = 25.3 bits (55), Expect = 5.4
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 134 VNFELEFDVHIEHIEEKLEG-------GNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKK 186
V F E + E+ +K N T N D N + QD K
Sbjct: 145 VGFAAETNNVEEYARQKRIRKNLDLICANDVSQPTQGFNSDNNALHLFWQD--GDKVLPL 202
Query: 187 QNKNKMASVI 196
+ K + ++
Sbjct: 203 ERKELLGQLL 212
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.135 0.402
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,589,452
Number of extensions: 70273
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 14
Length of query: 204
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 120
Effective length of database: 2,116,429
Effective search space: 253971480
Effective search space used: 253971480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)