RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780955|ref|YP_003065368.1| hypothetical protein CLIBASIA_04270 [Candidatus Liberibacter asiaticus str. psy62] (204 letters) >2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} (A:) Length = 176 Score = 221 bits (565), Expect = 5e-59 Identities = 97/177 (54%), Positives = 122/177 (68%), Gaps = 13/177 (7%) Query: 28 DHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEK 87 DHIRYDILA++ALRG+++ VL EVA+ G LPG+HHF+ITF T A GVRISQ+L+ Y E+ Sbjct: 4 DHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQ 63 Query: 88 MTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHI 147 TIVIQ+QFWD KV + FE+GLSFS+ PE+LVIP+NAI+GFYDPSVNFELEFDV + Sbjct: 64 XTIVIQHQFWDXKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAKE 123 Query: 148 EEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNKNKMASVISLDNFRKK 204 EE E T P + + + + +KK SV+SLD FRKK Sbjct: 124 EEXEEAEIT----AYPVSHEAKPASETPKSGEEKKE---------GSVVSLDAFRKK 167 >2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function, hydrolase activator; 2.55A {Caulobacter vibrioides} PDB: 2qaz_A (A:) Length = 157 Score = 207 bits (528), Expect = 1e-54 Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 1/132 (0%) Query: 22 DTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLR 81 T D ++Y+ +A++ALRG+VK L + A+ G LP HH YITF T A GV Q+L Sbjct: 6 QTEPPEDLMQYEAMAQDALRGVVKAALKKAAAPGGLPEPHHLYITFKTKAAGVSGPQDLL 65 Query: 82 KNYPEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFD 141 YP++MTIV+Q+Q+WDL + F V L F P+RL +P+ A+ FYDPSV F L+F Sbjct: 66 SKYPDEMTIVLQHQYWDLAPGETFFSVTLKFGGQPKRLSVPYAALTRFYDPSVQFALQFS 125 Query: 142 VHIEHIEEKLEG 153 E IE++ E Sbjct: 126 -APEIIEDEPEP 136 >1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} (A:) Length = 118 Score = 105 bits (264), Expect = 4e-24 Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 8/114 (7%) Query: 39 ALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVI---QNQ 95 L +L L + ++ GV++ Y IV+ Sbjct: 5 QLTPRRPYLLRAFYEWL-LDNQLTPHLVVDVTLPGVQVPME----YARDGQIVLNIAPRA 59 Query: 96 FWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEE 149 +L++ ++ F +P ++ +P A+ Y F+ + E+ Sbjct: 60 VGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDED 113 >1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} (A:) Length = 129 Score = 98.2 bits (245), Expect = 6e-22 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 7/93 (7%) Query: 60 EHHFYITFATNARGVRISQNLRKNYPEKMTIVIQ---NQFWDLKVLDNHFEVGLSFSNVP 116 Y+ GV + Y + IV+ + +L++ ++ + F V Sbjct: 24 SFTPYLVVDATYLGVNVPVE----YVKDGQIVLNLSASATGNLQLTNDFIQFNARFKGVS 79 Query: 117 ERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEE 149 L IP A Y + F+ + E Sbjct: 80 RELYIPXGAALAIYARENGDGVXFEPEEIYDEL 112 >1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} (A:) Length = 111 Score = 94.7 bits (236), Expect = 8e-21 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 7/86 (8%) Query: 60 EHHFYITFATNARGVRISQNLRKNYPEKMTIVIQ---NQFWDLKVLDNHFEVGLSFSNVP 116 Y+ GV + Y + IV+ + +L++ ++ + F V Sbjct: 24 SFTPYLVVDATYLGVNVPVE----YVKDGQIVLNLSASATGNLQLTNDFIQFNARFKGVS 79 Query: 117 ERLVIPFNAIKGFYDPSVNFELEFDV 142 L IP A Y + F+ Sbjct: 80 RELYIPMGAALAIYARENGDGVMFEP 105 >2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Agrobacterium tumefaciens str} (A:1-68,A:193-323) Length = 199 Score = 27.2 bits (60), Expect = 1.6 Identities = 5/27 (18%), Positives = 11/27 (40%) Query: 32 YDILAKEALRGLVKVVLSEVASIGSLP 58 D LA +AL + + + + + Sbjct: 89 LDFLADDALAQVFRTTFNLPDAFAAAD 115 >1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} (A:303-455) Length = 153 Score = 26.3 bits (58), Expect = 3.0 Identities = 2/16 (12%), Positives = 9/16 (56%) Query: 17 IIKWIDTLMNYDHIRY 32 + + L++ D +++ Sbjct: 136 MTHYQALLLDTDRVQF 151 >2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} (A:149-238) Length = 90 Score = 25.8 bits (57), Expect = 5.1 Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 3/22 (13%) Query: 5 WNFFSSRWQWFFIIKWIDTLMN 26 W + + I ID L+N Sbjct: 12 WGELGYKEHYRLI---IDCLLN 30 >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, SGC, alternative splicing, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} (A:41-69,A:370-498) Length = 158 Score = 25.7 bits (56), Expect = 5.1 Identities = 9/81 (11%), Positives = 21/81 (25%), Gaps = 5/81 (6%) Query: 12 WQWFFIIKWIDTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATN- 70 + FI + D+ L + + + G G +HF +T Sbjct: 77 FPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPV 136 Query: 71 ---ARGV-RISQNLRKNYPEK 87 + ++ + Sbjct: 137 EKLKTVLQKVKDFHINFLEKY 157 >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} (A:) Length = 226 Score = 25.3 bits (55), Expect = 5.4 Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 9/70 (12%) Query: 134 VNFELEFDVHIEHIEEKLEG-------GNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKK 186 V F E + E+ +K N T N D N + QD K Sbjct: 145 VGFAAETNNVEEYARQKRIRKNLDLICANDVSQPTQGFNSDNNALHLFWQD--GDKVLPL 202 Query: 187 QNKNKMASVI 196 + K + ++ Sbjct: 203 ERKELLGQLL 212 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.135 0.402 Gapped Lambda K H 0.267 0.0580 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,589,452 Number of extensions: 70273 Number of successful extensions: 146 Number of sequences better than 10.0: 1 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 14 Length of query: 204 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 120 Effective length of database: 2,116,429 Effective search space: 253971480 Effective search space used: 253971480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.1 bits)