BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780955|ref|YP_003065368.1| hypothetical protein
CLIBASIA_04270 [Candidatus Liberibacter asiaticus str. psy62]
(204 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780955|ref|YP_003065368.1| hypothetical protein CLIBASIA_04270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 204
Score = 419 bits (1076), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MVSLWNFFSSRWQWFFIIKWIDTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGE 60
MVSLWNFFSSRWQWFFIIKWIDTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGE
Sbjct: 1 MVSLWNFFSSRWQWFFIIKWIDTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGE 60
Query: 61 HHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLV 120
HHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLV
Sbjct: 61 HHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLV 120
Query: 121 IPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSK 180
IPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSK
Sbjct: 121 IPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSK 180
Query: 181 KKSTKKQNKNKMASVISLDNFRKK 204
KKSTKKQNKNKMASVISLDNFRKK
Sbjct: 181 KKSTKKQNKNKMASVISLDNFRKK 204
>gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 86
Score = 23.1 bits (48), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 106 FEVGLSFSNVPERLVIPFNAIKGFYDPSVNFEL 138
FE+GL N P++ + P + +V+FEL
Sbjct: 21 FEMGLRHKNHPKKALKPSCNLSTIIPQTVSFEL 53
>gi|254780350|ref|YP_003064763.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 431
Score = 22.3 bits (46), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 109 GLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIE 145
+S + ERL+I G DPS + FD ++E
Sbjct: 108 SVSVQRLRERLII-----SGDLDPSKGLSVAFDAYVE 139
>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 472
Score = 21.6 bits (44), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 13 QWFFIIKWIDTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSL 57
+ FF IK +YD + + A + GLV V VASIGSL
Sbjct: 41 EAFFAIKG----PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,683
Number of Sequences: 1233
Number of extensions: 5827
Number of successful extensions: 16
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 8
length of query: 204
length of database: 328,796
effective HSP length: 70
effective length of query: 134
effective length of database: 242,486
effective search space: 32493124
effective search space used: 32493124
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)