HHsearch alignment for GI: 254780956 and conserved domain: PRK13821
>PRK13821 thyA thymidylate synthase; Provisional.
Probab=100.00 E-value=0 Score=790.71 Aligned_cols=264 Identities=40% Similarity=0.753 Sum_probs=252.8
Q ss_pred CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH
Q ss_conf 95799999999863926037998534777612046442369810464202268899999998536664688864003213
Q gi|254780956|r 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIW 80 (264)
Q Consensus 1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW 80 (264)
T Consensus 1 MkqYl~l~~~IL~~G~~~~dRTG~gT~S~FG~~~rfdL~~gFPlLTTKkv~~k~vv~ELLWFl~G~tn~~~L~~~gv~IW 80 (323)
T PRK13821 1 MKQYLDLVRTILDTGTWQENRTGIRTISMPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRASRSAADFRALGCKVW 80 (323)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEC
T ss_conf 96899999999980988789899974774566179756679843562135699999999999967643667886496531
Q ss_pred HHHHHHH------------CCCCCCCCCHHHCCCCC---------------------------CC-------CHHHHHHH
Q ss_conf 5654210------------01387662010003677---------------------------53-------26889999
Q gi|254780956|r 81 DEWADKD------------GELGPIYGVQWRSWPDY---------------------------DG-------NVIDQISS 114 (264)
Q Consensus 81 d~~a~~~------------g~lg~~YG~qwR~~~~~---------------------------~~-------~~~DQl~~ 114 (264)
T Consensus 81 d~na~~~~~~~~~~~~~~~~dlGpiYG~QWR~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~G~~~~~~~~~iDQl~~ 160 (323)
T PRK13821 81 DQNANENAQWLANPYRQGVDDLGDVYGVQWRQWPGYKVLDASADAQIADATSRGFRQVARFDEDGAPKVLLYKAIDQLRQ 160 (323)
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 45555001432364335678674623575503877445553333221121234533333446666533345565249999
Q ss_pred HHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEE--ECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 999998088523677751698883202421135402466--768805999972624402220216799999999999762
Q gi|254780956|r 115 IVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFY--VDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVI 192 (264)
Q Consensus 115 vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~~qf~--v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~ 192 (264)
T Consensus 161 vI~~iK~nP~sRR~ivsaWNp~~l~~maLPPCH~~~QF~v~v~~~~L~l~lyQRS~D~~LGvPFNIasYalL~~miA~~~ 240 (323)
T PRK13821 161 CLDTIMNDPGSRRILFHGWNPAVLDEIALPACHLLYQFLPNVETREISLCLYIRSNDVGLGTPFNLTEGAALLSLVGRLT 240 (323)
T ss_pred HHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCEEEEEEEECCCCEEEEEEEECHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99997429754015875268567526778888148998896589958899995403424485379999999999999985
Q ss_pred CCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCC-----------CCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 2421111352273021003689999983369876877996488687-----------11262033799768768887875
Q gi|254780956|r 193 GFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVD-----------LLSFRYEDFTLRSYEPHAAILAK 261 (264)
Q Consensus 193 gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~-----------i~d~~~eDf~L~~Y~~hp~Ik~~ 261 (264)
T Consensus 241 gl~pG~~~~~igDaHIY~nHi~~v~eQl~R~P~~~P~L~i~~~i~~~~~~~~~~~~~i~~~~~dDf~l~~Y~~Hp~Ik~~ 320 (323)
T PRK13821 241 GYTPRWFTYFIGDAHIYENHLDMLNEQLTREPYESPRLVISDRVPEYAKTGVYEPEWLEKIEPSDFSLVGYRHHEPLTAP 320 (323)
T ss_pred CCCCCEEEEECCEEEEHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHCCCCCCHHHCCCCCCCEEEECCCCCCCCCCC
T ss_conf 88277799987277874768999999966899889978967888731220212210230487466699698899887756
Q ss_pred CCC
Q ss_conf 569
Q gi|254780956|r 262 VSV 264 (264)
Q Consensus 262 mAV 264 (264)
T Consensus 321 mAV 323 (323)
T PRK13821 321 MAV 323 (323)
T ss_pred CCC
T ss_conf 239