Query         gi|254780956|ref|YP_003065369.1| thymidylate synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 264
No_of_seqs    158 out of 1666
Neff          5.7 
Searched_HMMs 23785
Date          Tue May 31 23:37:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780956.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3jsu_A Dihydrofolate reductase 100.0       0       0  771.8  22.2  263    2-264   326-608 (608)
  2 3hj3_A Chain A, crystal struct 100.0       0       0  764.1  23.7  263    2-264   238-521 (521)
  3 1f28_A Thymidylate synthase; b 100.0       0       0  749.4  22.0  263    2-264     7-297 (297)
  4 1hw4_A TS, thymidylate synthas 100.0       0       0  744.6  22.5  263    2-264    73-355 (355)
  5 3ix6_A TS, tsase, thymidylate  100.0       0       0  745.7  21.4  264    1-264    97-360 (360)
  6 1j3k_C Bifunctional dihydrofol 100.0       0       0  741.5  23.0  263    2-264    46-328 (328)
  7 2g8o_A TS, tsase, thymidylate  100.0       0       0  741.2  22.4  264    1-264     1-264 (264)
  8 3ik0_A TS, tsase, thymidylate  100.0       0       0  742.3  20.9  263    2-264     4-316 (316)
  9 2aaz_A TS, tsase, thymidylate  100.0       0       0  739.9  22.0  263    2-264    21-317 (317)
 10 3nrr_A Dihydrofolate reductase 100.0       0       0  733.6  23.4  263    2-264   233-515 (515)
 11 3kgb_A Thymidylate synthase 1/ 100.0       0       0  734.0  19.0  264    1-264     9-294 (294)
 12 3ed7_A Tsase, TS, thymidylate  100.0       0       0  730.6  20.6  263    2-264    13-295 (295)
 13 3irm_A Bifunctional dihydrofol 100.0       0       0  728.5  21.7  263    2-264   238-521 (521)
 14 1bkp_A Thymidylate synthase A; 100.0       0       0  698.8  21.6  262    2-264     5-278 (278)
 15 1tis_A Thymidylate synthase; t 100.0       0       0  703.5  14.3  259    1-264     1-286 (286)
 16 1b5e_A Protein (deoxycytidylat 100.0       0       0  522.1  13.3  214    1-224     8-233 (246)
 17 1kwa_A Hcask/LIN-2 protein; PD  51.1      12 0.00053   17.1   3.5   49  188-237    37-86  (88)
 18 2q3g_A PDZ and LIM domain prot  44.3      16 0.00068   16.4   3.2   48  189-237    40-87  (89)
 19 2d92_A INAD-like protein; PDZ   35.2      22 0.00095   15.5   3.4   48  188-235    56-104 (108)
 20 1zd0_A Hypothetical protein PF  33.9      15 0.00063   16.6   1.7   31   48-78     67-98  (150)
 21 2pkt_A PDZ and LIM domain prot  32.6      25   0.001   15.3   3.2   46  188-234    39-84  (91)
 22 2zpm_A Regulator of sigma E pr  32.1      25  0.0011   15.2   3.2   48  188-237    16-63  (91)
 23 1x5q_A LAP4 protein; PDZ domai  31.8      26  0.0011   15.2   3.3   47  188-235    58-104 (110)
 24 2jil_A GRIP1 protein, glutamat  29.3      28  0.0012   14.9   3.0   47  188-235    44-91  (97)
 25 3enp_A TP53RK-binding protein;  28.0      24   0.001   15.3   1.9   30   49-78     71-101 (177)
 26 2jxo_A Ezrin-radixin-moesin-bi  27.9      15 0.00061   16.7   0.8   44  189-233    46-89  (98)
 27 2jik_A Synaptojanin-2 binding   27.8      30  0.0013   14.8   3.3   48  188-236    49-97  (101)
 28 2w4f_A Protein LAP4; structura  26.3      32  0.0013   14.6   3.8   47  189-236    47-93  (97)
 29 2koj_A Partitioning defective   24.6      34  0.0014   14.4   4.1   49  188-236    51-101 (111)
 30 2qt5_A Glutamate receptor-inte  24.1      35  0.0015   14.4   2.6   50  188-238   147-197 (200)
 31 2yuy_A RHO GTPase activating p  24.1      35  0.0015   14.3   3.2   47  188-235    73-119 (126)
 32 1vae_A Rhophilin 2, rhophilin,  23.8      36  0.0015   14.3   2.5   46  188-233    48-93  (111)
 33 1a87_A Colicin N; bacteriocin,  23.8      24   0.001   15.4   1.3   46   89-142   162-213 (321)
 34 2ego_A General receptor for ph  23.4      36  0.0015   14.3   2.5   38  189-226    50-87  (96)
 35 2d90_A PDZ domain containing p  23.3      36  0.0015   14.3   2.4   44  189-233    43-86  (102)
 36 1ujd_A KIAA0559 protein; PDZ d  22.8      37  0.0016   14.2   4.5   48  188-236    61-109 (117)
 37 3kzd_A TIAM-1, T-lymphoma inva  22.8      37  0.0016   14.2   3.3   36  188-223    47-82  (94)
 38 1col_A Colicin A; antibacteria  22.3      29  0.0012   14.8   1.5   37  106-142    53-95  (204)
 39 1m5z_A GRIP, AMPA receptor int  21.9      39  0.0016   14.1   3.3   45  188-233    44-88  (91)
 40 2eeg_A PDZ and LIM domain prot  21.5      40  0.0017   14.0   4.0   46  189-235    45-90  (94)
 41 2qkv_A Inactivation-NO-after-p  21.0      41  0.0017   14.0   3.2   46  188-234    43-89  (96)
 42 1u39_A Amyloid beta A4 precurs  20.8      41  0.0017   14.0   2.8   44  189-233    35-78  (80)
 43 2i88_A Colicin-E1; protein-mem  20.8      17  0.0007   16.3  -0.1   33  110-142    56-94  (191)
 44 2k8y_A Uncharacterized protein  20.7      35  0.0015   14.3   1.6   32   47-78     50-82  (150)
 45 2vsv_A Rhophilin-2; scaffold p  20.1      42  0.0018   13.9   4.0   46  188-233    56-101 (109)

No 1  
>3jsu_A Dihydrofolate reductase-thymidylate synthase; rossmann fold, oxidoreductase, transferase; HET: KA5 NDP UMP; 2.70A {Plasmodium falciparum}
Probab=100.00  E-value=0  Score=771.83  Aligned_cols=263  Identities=47%  Similarity=0.895  Sum_probs=257.2

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf             57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD   81 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd   81 (264)
                      +|||+||++||++|+.++||||++|+|+||++|||||++|||||||||||||++++||||||+|+||+++|+++||||||
T Consensus       326 ~qYl~ll~~il~~G~~~~dRTG~gT~s~FG~~~rfdl~~gfPlLTTKkv~~k~vi~ELLWfL~G~tn~~~L~~~~v~IWd  405 (608)
T 3jsu_A          326 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWE  405 (608)
T ss_dssp             HHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEETTTCCCCCSSSCCCCHHHHHHHHHHHTTCCBHHHHHTTTCCTTG
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHCCEEECC
T ss_conf             99999999999849876798989868861660464324587612314000899999999998589757889744603366


Q ss_pred             HHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC
Q ss_conf             65421------------0013876620100036--------775326889999999998088523677751698883202
Q gi|254780956|r   82 EWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM  141 (264)
Q Consensus        82 ~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~  141 (264)
                      +|+++            +|++||+||+|||+|+        +|.++++|||++||++||+||+|||+|+++|||+++++|
T Consensus       406 ~n~~~e~ld~~~~~~~~~gdlGpvYG~QWR~fga~y~~~~~~~~~~~~DQl~~vI~~Lk~nP~sRR~iis~WNp~dl~~m  485 (608)
T 3jsu_A          406 ANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQM  485 (608)
T ss_dssp             GGSSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGGGS
T ss_pred             CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCC
T ss_conf             55553045422644434676475332110037974567667877750088999999974096778266533476670667


Q ss_pred             CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC
Q ss_conf             42113540246676880599997262440222021679999999999976224211113522730210036899999833
Q gi|254780956|r  142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS  221 (264)
Q Consensus       142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~  221 (264)
                      ||||||+.+||+|++|+|+|++||||+|+|||+|||||+||+|++|||++||++||+|+|++||+|||+||+|+|++||+
T Consensus       486 aLpPCh~~~QF~V~~g~L~~~~~QRS~D~~LG~PfNiasyalL~~miA~~~gl~~G~~~h~igd~HIY~nH~~~v~~ql~  565 (608)
T 3jsu_A          486 ALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN  565 (608)
T ss_dssp             SSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHTT
T ss_pred             CCCCCCEEEEEEEECCEEEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHHC
T ss_conf             78886068999980998999997131012125627999999999999998598166599980455860868999999857


Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             6987687799648868711262033799768768887875569
Q gi|254780956|r  222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |+|+++|+|+|++++++|+||+++||+|+||+|||+||||||-
T Consensus       566 R~P~~~P~L~in~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~maa  608 (608)
T 3jsu_A          566 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMAA  608 (608)
T ss_dssp             SCCCCCCEEEECTTCCSTTSCCGGGEEEECCCCCCCCCSCC--
T ss_pred             CCCCCCCEEEECCCCCCHHCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             8998998579799988640188659799688789987866569


No 2  
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=100.00  E-value=0  Score=764.11  Aligned_cols=263  Identities=48%  Similarity=0.889  Sum_probs=257.0

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf             57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD   81 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd   81 (264)
                      .|||+|+++||++|+.++||||++|+|+||++|||||++|||||||||+|||++++||||||||+||++.|+++|+||||
T Consensus       238 ~qYl~l~~~Il~~G~~~~dRtG~~t~s~Fg~~~rfdl~~gfPlLTtKkv~~k~v~~ELlWfl~G~tn~~~L~~~~v~IWd  317 (521)
T 3hj3_A          238 FQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYIWS  317 (521)
T ss_dssp             HHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEECSSSCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCTTS
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHCCCEECC
T ss_conf             99999999999758866899998789993546898466788615535522889999999998588517778752655786


Q ss_pred             HHHH------------HHCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC
Q ss_conf             6542------------10013876620100036--------775326889999999998088523677751698883202
Q gi|254780956|r   82 EWAD------------KDGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM  141 (264)
Q Consensus        82 ~~a~------------~~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~  141 (264)
                      +|++            ++|++||+||+|||+|.        +|.|+++|||++||++||+||+|||+|+++|||+++++|
T Consensus       318 ~n~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~~~~y~~~~~~y~~~~~DQl~~vI~~lk~nP~sRR~ii~~wnp~dl~~m  397 (521)
T 3hj3_A          318 GNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQM  397 (521)
T ss_dssp             GGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHSTTSSCCEEECCCTTTGGGS
T ss_pred             CCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHEEEEECCHHHHCCC
T ss_conf             67655468753677311477687545355405776666556667865779999999985198422247652366675266


Q ss_pred             CCCCCCCCEEEEECC-CEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHH
Q ss_conf             421135402466768-8059999726244022202167999999999997622421111352273021003689999983
Q gi|254780956|r  142 ALPPCHCLFQFYVDN-GKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL  220 (264)
Q Consensus       142 ~lpPC~~~~qf~v~~-g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql  220 (264)
                      ||||||+.+||+|++ |+|+|++||||+|++||+|||||+||+|++|||++||++||+|+|++||+|||+||+|++++||
T Consensus       398 aLpPCh~~~qf~v~~~~~L~~~~~qRS~D~~LG~pfNiasyalL~~miA~~~gl~~G~~~h~~gd~HIY~nH~~~~~~ql  477 (521)
T 3hj3_A          398 ALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQL  477 (521)
T ss_dssp             SSCCSEEEEEEEECTTSEEEEEEEESCCBTTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHT
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHH
T ss_conf             89989663799963898089999810230103675789999999999999849936659999467787087899999985


Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             36987687799648868711262033799768768887875569
Q gi|254780956|r  221 SRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       221 ~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      +|+|+++|+|+|++++++|+||+++||+|+||+|||+|||||||
T Consensus       478 ~r~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~aV  521 (521)
T 3hj3_A          478 SRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV  521 (521)
T ss_dssp             TSCCCCCCEEEESSCCSSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             78998998679689988531498649799798678887756519


No 3  
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A*
Probab=100.00  E-value=0  Score=749.36  Aligned_cols=263  Identities=50%  Similarity=0.947  Sum_probs=255.8

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEE-CEEEEECC-CCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH
Q ss_conf             579999999986392603799853477761-20464423-6981046420226889999999853666468886400321
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFG-YQMRFDLS-KGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSI   79 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg-~~~~~dl~-~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~i   79 (264)
                      +||++|+++||++|+.++||||++|+|+|| .+|||||+ +|||||||||||||++++||||||+|+||+++|+++||||
T Consensus         7 ~qYl~l~~~IL~~G~~~~dRtG~gt~s~Fg~~~~rfdL~~~gFPlLTTKkv~~k~vi~ELlWfl~G~tn~~~L~~~~v~i   86 (297)
T 1f28_A            7 QQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETDSLKLREKNIHI   86 (297)
T ss_dssp             HHHHHHHHHHHHHCEEEECTTSSEEEEEESCCCEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTTCCT
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf             99999999999839886887898459872373158855789854255230349999999999981797478887512010


Q ss_pred             HHHHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHH
Q ss_conf             3565421------------0013876620100036--------7753268899999999980885236777516988832
Q gi|254780956|r   80 WDEWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALID  139 (264)
Q Consensus        80 Wd~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~  139 (264)
                      ||+|+++            +|++||+||+|||+|+        +|.++++|||++||++||+||+|||+|+++|||++++
T Consensus        87 Wd~~~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~g~~y~~~~~~~~~~~~DQl~~vi~~Lk~nP~sRR~iis~Wnp~~l~  166 (297)
T 1f28_A           87 WDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLE  166 (297)
T ss_dssp             THHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGG
T ss_pred             CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHC
T ss_conf             00001134454327765657875520115777438765455457888663399999998622987645899727877835


Q ss_pred             HCCCCCCCCCEEEEEC------CCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHH
Q ss_conf             0242113540246676------8805999972624402220216799999999999762242111135227302100368
Q gi|254780956|r  140 KMALPPCHCLFQFYVD------NGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHF  213 (264)
Q Consensus       140 ~~~lpPC~~~~qf~v~------~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~  213 (264)
                      +|||||||+.+||+|+      +|+|+|++||||+|+|||+|||||+|++|++|||++||++||+|+|++||+|||+||+
T Consensus       167 ~~aLpPCh~~~qf~V~~~~~~~~~~L~~~~~QRS~D~~LG~PfNiasyalL~~~iA~~~gl~~G~~~~~~gd~HIY~nH~  246 (297)
T 1f28_A          167 KMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHI  246 (297)
T ss_dssp             GSSSCCSEEEEEEEECCCSTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEHHHH
T ss_pred             CCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECEEEEHHHHH
T ss_conf             37888762368999955777877638899996248865330244999999999999970887756999812246438689


Q ss_pred             HHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             999998336987687799648868711262033799768768887875569
Q gi|254780956|r  214 EQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       214 ~~vk~ql~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |++++||+|+|+++|+|+|++++++|+||++|||+|+||+|||+|||||||
T Consensus       247 e~v~eql~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~aV  297 (297)
T 1f28_A          247 EALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI  297 (297)
T ss_dssp             HHHHTGGGSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred             HHHHHHHCCCCCCCCEEEECCCCCCHHCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf             999998568999999888589988550397024799796688887757629


No 4  
>1hw4_A TS, thymidylate synthase; methyltransferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1
Probab=100.00  E-value=0  Score=744.64  Aligned_cols=263  Identities=49%  Similarity=0.961  Sum_probs=257.9

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf             57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD   81 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd   81 (264)
                      +|||+|+++||++|+.++||||++|+|+||++|||||++|||||||||||||++++||||||||+||+++|+++|++|||
T Consensus        73 ~qYl~ll~~IL~~G~~~~dRTG~gT~SvFG~~~rfdL~~gFPlLTTKkv~~K~ii~ELLWfLsGstni~~L~e~~v~IWd  152 (355)
T 1hw4_A           73 LQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWD  152 (355)
T ss_dssp             HHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTTC----
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
T ss_conf             99999999999869856898998558861446897367798503433214788999999999679738888744551205


Q ss_pred             HHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC
Q ss_conf             65421------------0013876620100036--------775326889999999998088523677751698883202
Q gi|254780956|r   82 EWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM  141 (264)
Q Consensus        82 ~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~  141 (264)
                      +|+++            +|++||+||+|||+|+        +|.++++|||++||++||+||+|||+|+++|||+++++|
T Consensus       153 ~n~~~~~~d~~~~~~~e~GdlGpiYG~QwR~~g~~y~~~~~~y~g~giDQl~~vI~~Lk~nP~SRR~iis~Wnp~dl~~~  232 (355)
T 1hw4_A          153 ANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLM  232 (355)
T ss_dssp             ------------------CBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGGGTTTS
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCC
T ss_conf             61024466640432323686653035677643777655544467875889999999876489835045311788897346


Q ss_pred             CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC
Q ss_conf             42113540246676880599997262440222021679999999999976224211113522730210036899999833
Q gi|254780956|r  142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS  221 (264)
Q Consensus       142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~  221 (264)
                      +|||||+.+||+|++|+|+|++||||||+|||+||||++|++|++|||++||++||+|+|++||+|||+||+|++++||+
T Consensus       233 ~lpPCh~~~qF~v~~gkL~l~v~qRS~D~~LG~PfNi~syalL~~miA~~~gl~~G~~~h~~gd~HIY~nHie~vkeqL~  312 (355)
T 1hw4_A          233 ALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQ  312 (355)
T ss_dssp             SSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHTT
T ss_pred             CCCCCCEEEEEEECCCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHC
T ss_conf             78643078999973786358899603114432132199999999999998477566599995665762867999999957


Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             6987687799648868711262033799768768887875569
Q gi|254780956|r  222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |+|+++|+|+|++++++|+||++|||+|+||+|||+|||||||
T Consensus       313 R~P~~~P~L~in~~~~~i~d~~~~Df~L~~Y~~hp~Ik~~mAV  355 (355)
T 1hw4_A          313 REPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV  355 (355)
T ss_dssp             SCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCC---
T ss_pred             CCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             8998998558589988412588638799798789888867619


No 5  
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious disease, brucellosis, orchitis, epididymitis; 2.20A {Brucella melitensis}
Probab=100.00  E-value=0  Score=745.74  Aligned_cols=264  Identities=67%  Similarity=1.245  Sum_probs=262.5

Q ss_pred             CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH
Q ss_conf             95799999999863926037998534777612046442369810464202268899999998536664688864003213
Q gi|254780956|r    1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIW   80 (264)
Q Consensus         1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW   80 (264)
                      |+||++|+++||++|+.++||||++|+|+||+++||||++|||||||||+|||++++|++|||||+||+++|.+++++||
T Consensus        97 ~~qYl~ll~~Il~~G~~~~~RtG~~t~s~fg~~~~~dl~~gfPllTtKk~~~k~~i~ElLWfLsG~tn~~~l~~~~~~iW  176 (360)
T 3ix6_A           97 MRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEGFPVLTTKKLHLRSIIHELLWFLKGDTNIAYLKENGVTIW  176 (360)
T ss_dssp             CHHHHHHHHHHHHHCEEECC----CEEEEEEEEEEEEGGGCCCCC---CCCHHHHHHHHHHHHHCCCBTHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC
T ss_conf             06899999999984977789898745886255378334569865673215589999999999829985556875498621


Q ss_pred             HHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCEEE
Q ss_conf             56542100138766201000367753268899999999980885236777516988832024211354024667688059
Q gi|254780956|r   81 DEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLS  160 (264)
Q Consensus        81 d~~a~~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~~qf~v~~g~L~  160 (264)
                      ++|++++|++||+||+|||+|+.+.++++||+++||++||+||+|||+|+++|||.++++|+|||||+.+||+|++|+|+
T Consensus       177 ~~~a~~~g~lG~~YG~qwR~~~~~~~~~~DQl~~vI~~Lk~nP~sRR~ii~~Wnp~~l~~~~lpPCh~~~qF~V~~g~L~  256 (360)
T 3ix6_A          177 DEWADENGDLGPVYGYQWRSWPAPDGRHIDQIANLLKMLHTNPQSRRLIVSAWNPALVDEMALPPCHCLFQFYVANGRLS  256 (360)
T ss_dssp             GGGCCTTSBCSSCHHHHHHHEECTTSCEECHHHHHHHHHHHCTTCSCCEEECCCHHHHTTCSSCCSEEEEEEEEETTEEE
T ss_pred             HHHCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCCCCCEEEEEEEECCEEE
T ss_conf             43247788437302435503778897276899999998622985500688833777863779998755899999889379


Q ss_pred             EEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
Q ss_conf             99972624402220216799999999999762242111135227302100368999998336987687799648868711
Q gi|254780956|r  161 CQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL  240 (264)
Q Consensus       161 ~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~i~  240 (264)
                      |++||||||++||+||||++|++|++|||+.||++||+|+|++||+|||+||+++|++||+|+|+++|+|+|++++++|+
T Consensus       257 l~~~qRS~D~~lG~PfNi~syslL~~~iA~~~gl~~G~~~h~~gd~HIY~nH~e~vk~qL~R~p~~~P~l~i~~~~~~i~  336 (360)
T 3ix6_A          257 CQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPDVKDLF  336 (360)
T ss_dssp             EEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECTTCCSGG
T ss_pred             EEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
T ss_conf             99954445642025358999999999999854981437999977678727679999998577998998568589988512


Q ss_pred             CCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             262033799768768887875569
Q gi|254780956|r  241 SFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       241 d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      ||++|||+|+||+|||+|||||||
T Consensus       337 d~~~~Df~l~~Y~~hp~Ik~~~aV  360 (360)
T 3ix6_A          337 AFRFEDFRLDGYEADPTIKAPIAV  360 (360)
T ss_dssp             GCCGGGEEEEC-------------
T ss_pred             CCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             488238799798689987746639


No 6  
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=100.00  E-value=0  Score=741.50  Aligned_cols=263  Identities=47%  Similarity=0.902  Sum_probs=257.6

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf             57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD   81 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd   81 (264)
                      +||++||++||++|+.++||||++|+|+||++|||||++|||||||||+|||++++||||||+|+||+++|+++||+|||
T Consensus        46 ~qYl~l~~~Il~~G~~~~dRTG~gt~s~Fg~~~rfdl~~gFPlLTTKk~~~k~ii~ELLWfL~G~tn~~~L~~~gv~iWd  125 (328)
T 1j3k_C           46 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWE  125 (328)
T ss_dssp             HHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCCHHHHHHHHHHHTTCCBHHHHHTTTCCTTS
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
T ss_conf             99999999999809866788999768851552797356698536750245899999999998489657889867964151


Q ss_pred             HHHHHH------------CCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC
Q ss_conf             654210------------013876620100036--------775326889999999998088523677751698883202
Q gi|254780956|r   82 EWADKD------------GELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM  141 (264)
Q Consensus        82 ~~a~~~------------g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~  141 (264)
                      +|++++            |++||+||+|||+|+        ++.++++|||++||++||+||+|||+|+++|||.++++|
T Consensus       126 ~~~~~e~~~~~~~~~~~~gdlG~~YG~qwr~~g~~~~~~~~~~~~~g~DQl~~vI~~Lk~nP~sRR~iis~Wnp~~l~~~  205 (328)
T 1j3k_C          126 ANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQM  205 (328)
T ss_dssp             GGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGGGGGGS
T ss_pred             CCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCC
T ss_conf             20204454302223334587775465113306753456666788866219999999974097510034331477770046


Q ss_pred             CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC
Q ss_conf             42113540246676880599997262440222021679999999999976224211113522730210036899999833
Q gi|254780956|r  142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS  221 (264)
Q Consensus       142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~  221 (264)
                      +|||||+.+||+|++|+|+|++||||||++||+||||++||+|++|||+.||++||+|+|++||+|||+||+|++++||+
T Consensus       206 ~lpPCh~~~qF~v~~g~L~~~~~qRS~D~~lG~pfNi~~yalL~~~iA~~~gl~~G~~~h~~gd~HIY~nH~e~vk~qL~  285 (328)
T 1j3k_C          206 ALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN  285 (328)
T ss_dssp             SSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHTT
T ss_pred             CCCCCEEEEEEEEECCEEEEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHC
T ss_conf             66331478999997898999998400010015543099999999999997297446899998887871857999999966


Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             6987687799648868711262033799768768887875569
Q gi|254780956|r  222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |+|+++|+|+|++++++|+|++++||+|+||+|||+||||||-
T Consensus       286 R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~maa  328 (328)
T 1j3k_C          286 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMAA  328 (328)
T ss_dssp             SCCCCCCEEEECTTCCSGGGCCGGGEEEECCCCCCCCCCCSCC
T ss_pred             CCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             8999999679789988630198117799798899977757459


No 7  
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternary complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=100.00  E-value=0  Score=741.25  Aligned_cols=264  Identities=58%  Similarity=1.110  Sum_probs=262.7

Q ss_pred             CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH
Q ss_conf             95799999999863926037998534777612046442369810464202268899999998536664688864003213
Q gi|254780956|r    1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIW   80 (264)
Q Consensus         1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW   80 (264)
                      ||||++|+++||++|+.++||||++|+|+||++++||+++|||+|||||++||++++|++|||||+||+++|+++|++||
T Consensus         1 m~qYl~l~~~Il~~G~~~~drtG~~t~sifg~~~~~dl~~gfPllTtKk~~~k~~~~EllWfl~G~tn~~~l~~~~~~iW   80 (264)
T 2g8o_A            1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIW   80 (264)
T ss_dssp             CHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHHTTCCTT
T ss_pred             CHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCC
T ss_conf             95899999999982987328999738999065578763238872464033344437888999816845554443034413


Q ss_pred             HHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCEEE
Q ss_conf             56542100138766201000367753268899999999980885236777516988832024211354024667688059
Q gi|254780956|r   81 DEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLS  160 (264)
Q Consensus        81 d~~a~~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~~qf~v~~g~L~  160 (264)
                      ++|++++|++|++||+|||+|+.++|+++||+++||++||+||+|||+|+++|||.++++|+|||||..+||+|++|+|+
T Consensus        81 ~~~~~~~G~~G~~YG~q~r~~~~~~~~~~DQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~~~l~PC~~~~qf~v~~g~L~  160 (264)
T 2g8o_A           81 DEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS  160 (264)
T ss_dssp             GGGCCTTSBCCSCHHHHHHHEEETTTEEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTEEE
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCCCCCCCCEEEEEEEECCCEE
T ss_conf             23341133265542100033437999852589999999865977503899942455664467676617899999489408


Q ss_pred             EEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
Q ss_conf             99972624402220216799999999999762242111135227302100368999998336987687799648868711
Q gi|254780956|r  161 CQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL  240 (264)
Q Consensus       161 ~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~i~  240 (264)
                      |++||||||++||+|||||+|++|++|||+.||++||+|+|++||+|||+||+|++++||+|+|+++|+|+|++++++|+
T Consensus       161 ~~~~qRS~D~~lG~pfNi~~~~~L~~~iA~~~gl~~G~~~~~~gd~HIY~~h~~~v~~ql~r~p~~~P~l~i~~~~~~i~  240 (264)
T 2g8o_A          161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF  240 (264)
T ss_dssp             EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECCCCSSTT
T ss_pred             EEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
T ss_conf             99983211210256534999999999999987075645898503058646468999998377999998779689978503


Q ss_pred             CCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             262033799768768887875569
Q gi|254780956|r  241 SFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       241 d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |+++|||+|+||+|||+|||||||
T Consensus       241 d~~~~Df~l~~Y~~~p~ik~~maV  264 (264)
T 2g8o_A          241 DYRFEDFEIEGYDPHPGIKAPVAI  264 (264)
T ss_dssp             CCCGGGEEEESCCCCCCCCCCCCC
T ss_pred             CCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             688468799798789987746729


No 8  
>3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase, methyltransferase, nucleot biosynthesis; HET: 7C1 UMP; 2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 1tdb_A* 1tda_A* ...
Probab=100.00  E-value=0  Score=742.28  Aligned_cols=263  Identities=55%  Similarity=0.994  Sum_probs=259.7

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf             57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD   81 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd   81 (264)
                      +|||+||++||++|+.++||||++|+|+||.++||||++|||||||||+|||++++||+|||+|+||++.|+++||||||
T Consensus         4 ~qYl~l~~~Il~~G~~~~dRTg~~T~s~fG~~~r~dl~~gfPlLTTKkv~~k~vi~ELlWfl~G~tn~~~L~~~gv~IWd   83 (316)
T 3ik0_A            4 QPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFLHGDTNIRFLLQHRNHIWD   83 (316)
T ss_dssp             HHHHHHHHHHHHHCEEEEETTTEEEEEEESCEEEEEGGGCCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTTCCTTH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
T ss_conf             99999999999829886788988669982124798333598646642043888999999998189447899974997657


Q ss_pred             HHHHHH--------------------------------------------------CCCCCCCCCHHHCCCCCCCCHHHH
Q ss_conf             654210--------------------------------------------------013876620100036775326889
Q gi|254780956|r   82 EWADKD--------------------------------------------------GELGPIYGVQWRSWPDYDGNVIDQ  111 (264)
Q Consensus        82 ~~a~~~--------------------------------------------------g~lg~~YG~qwR~~~~~~~~~~DQ  111 (264)
                      +||+++                                                  |++|++||+|||+|..+.++++||
T Consensus        84 ~~a~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GdlG~~YG~qwR~~~~~~~~~~DQ  163 (316)
T 3ik0_A           84 EWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQ  163 (316)
T ss_dssp             HHHHHHHTTSSSCCSSCCTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHTBCSSSHHHHHHCEECTTSCEECH
T ss_pred             CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEECCCCCCCHHHH
T ss_conf             52366544211114765577761204462102001567877766422344322356766665531212202578748789


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999808852367775169888320242113540246676880599997262440222021679999999999976
Q gi|254780956|r  112 ISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASV  191 (264)
Q Consensus       112 l~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~  191 (264)
                      +++||++||+||+|||+|+++|||.++++|+|||||+.+||+|++|+|+|+++|||||++||+||||++|++|++|||+.
T Consensus       164 l~~vI~~Lk~~P~sRR~i~s~Wnp~d~~~~~l~PC~~~~qf~v~~g~L~l~~~qRS~D~~lG~pfNi~~y~~L~~~iA~~  243 (316)
T 3ik0_A          164 LGDVIEQIKTHPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHE  243 (316)
T ss_dssp             HHHHHHHHHHCTTCSCCEEECCCTTTTTTSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHEEEECCCHHHHCCCCCCCCCCEEEEEEECCEEEEEEEEECCCHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             99999985259864220554068889607887546744899984891799999625223321368999999999999986


Q ss_pred             HCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             2242111135227302100368999998336987687799648868711262033799768768887875569
Q gi|254780956|r  192 IGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       192 ~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      ||++||+|+|++||+|||+||+|++++||+|+|+++|+|+|++++++|+||++|||+|+||+|||+|||||||
T Consensus       244 ~gl~~G~~~~~~gd~HIY~~h~~~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~AV  316 (316)
T 3ik0_A          244 CGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV  316 (316)
T ss_dssp             HTCEEEEEEEEEEEEEEETTSHHHHHHHTTSCCCCCCEEEECTTCCCGGGCCGGGEEEECCCCCCCCCC----
T ss_pred             CCCCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             0983044899610358627479999998477999998579799988502498347799798688887747649


No 9  
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans}
Probab=100.00  E-value=0  Score=739.88  Aligned_cols=263  Identities=46%  Similarity=0.850  Sum_probs=253.8

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEE-CEEEEECCCC-CCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH
Q ss_conf             579999999986392603799853477761-2046442369-81046420226889999999853666468886400321
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFG-YQMRFDLSKG-FPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSI   79 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg-~~~~~dl~~g-fPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~i   79 (264)
                      .|||+|+++||++|+.++||||++|+|+|| .+|||||++| ||||||||||||++++||||||+|+||++.|+++||+|
T Consensus        21 ~QYl~ll~~Il~~G~~~~dRTG~gt~svfg~~~~rfdl~~g~fPlLTTKkv~~k~ii~ELLWfl~G~tn~~~L~~~gv~I  100 (317)
T 2aaz_A           21 YQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAELLWFVSGCTDAKMLSSQGVGI  100 (317)
T ss_dssp             HHHHHHHHHHHHHCEEECCTTSSCEEEEESCCCEEEECCTTBCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHTTTCCT
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC
T ss_conf             99999999999829876887898668773463178866789743455221558989999999997287688897547873


Q ss_pred             HHHHHHHH------------CCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHH
Q ss_conf             35654210------------013876620100036--------7753268899999999980885236777516988832
Q gi|254780956|r   80 WDEWADKD------------GELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALID  139 (264)
Q Consensus        80 Wd~~a~~~------------g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~  139 (264)
                      ||+|++++            |++||+||+|||+|+        +|.++++|||++||++||+||+|||+|+++|||++++
T Consensus       101 Wd~~~~~~~~~~~~~~~~~~gdlGpiYG~QwR~~g~~y~~~~~~~~~~~~DQl~~vI~~Lk~nP~sRR~iis~Wnp~dl~  180 (317)
T 2aaz_A          101 WDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLP  180 (317)
T ss_dssp             THHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGG
T ss_pred             CCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCC
T ss_conf             21456513566458875446865632243877269532057676478653799999986402987403798716777736


Q ss_pred             HCCCCCCCCCEEEEEC---------CCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEH
Q ss_conf             0242113540246676---------8805999972624402220216799999999999762242111135227302100
Q gi|254780956|r  140 KMALPPCHCLFQFYVD---------NGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYN  210 (264)
Q Consensus       140 ~~~lpPC~~~~qf~v~---------~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~  210 (264)
                      +|+|||||+.+||+|+         +|+|+|++||||+|++||+||||++|++|++|||++||++||+|+|++||+|||+
T Consensus       181 ~m~lpPCh~~~QF~V~~~~~~~~~~~~~L~~~~~qRS~D~~LG~PfNiasyalL~~miA~~~gl~~G~~~~~~gd~HIY~  260 (317)
T 2aaz_A          181 LMALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDAHVYR  260 (317)
T ss_dssp             GSSSCCSEEEEEEEEECCCTTCTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEG
T ss_pred             CCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEH
T ss_conf             47898875048998844654555779869999951003454430112999999999999985475663899735668608


Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCC---CCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             3689999983369876877996488---68711262033799768768887875569
Q gi|254780956|r  211 NHFEQADLQLSRSPRTLPQMIINPN---IVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       211 nH~~~vk~ql~R~p~~~P~L~i~~~---~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      ||+|+|++||+|+|+++|+|+|+++   +++|++|++|||+|+||+|||+||||||-
T Consensus       261 nHie~vkeqL~R~P~~~P~l~i~~~~~~i~di~~~~~~Df~l~~Y~~hp~Ik~~maa  317 (317)
T 2aaz_A          261 DHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMSA  317 (317)
T ss_dssp             GGHHHHHHHHTSCCCCCCEEEESSCHHHHCSTTCCCGGGEEEECCCCCCCCCCCCCC
T ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCHHEEEECCCCCCCCCCCCCC
T ss_conf             689999998578999999688238888633121597027799798889977856569


No 10 
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=100.00  E-value=0  Score=733.57  Aligned_cols=263  Identities=48%  Similarity=0.918  Sum_probs=257.4

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf             57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD   81 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd   81 (264)
                      .|||+|+++||++|+.++||||++|+|+||++|||||++|||||||||||||++++||||||||+||++.|.++++||||
T Consensus       233 ~qYl~l~~~Il~~G~~~~~RtG~~t~s~fg~~~r~dl~~gfPlLTtKk~~~k~i~~ELlWflsG~tn~~~L~~~~v~IWd  312 (515)
T 3nrr_A          233 FQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLWFIKGSTNGNDLLAKNVRIWE  312 (515)
T ss_dssp             HHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTTTCCTTH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCEECC
T ss_conf             99999999999726803589997069964705787545687640025321888999999998389627889855754267


Q ss_pred             HHHHHH------------CCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC
Q ss_conf             654210------------013876620100036--------775326889999999998088523677751698883202
Q gi|254780956|r   82 EWADKD------------GELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM  141 (264)
Q Consensus        82 ~~a~~~------------g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~  141 (264)
                      +|++++            |++|++||+|||+|+        +|.++++|||++||++||+||+|||+|+++|||+++++|
T Consensus       313 ~~~~~~~~~~~g~~~~~~gdlG~iYG~qwr~~g~~~~~~~~~~~~~~~DQl~~vi~~Lk~nP~sRR~ii~~wnp~~~~~~  392 (515)
T 3nrr_A          313 LNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKM  392 (515)
T ss_dssp             HHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGGGGGGS
T ss_pred             CCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHCC
T ss_conf             76551347633754234464676341055424863556632578876668999999986597212321232668887277


Q ss_pred             CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC
Q ss_conf             42113540246676880599997262440222021679999999999976224211113522730210036899999833
Q gi|254780956|r  142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS  221 (264)
Q Consensus       142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~  221 (264)
                      +|||||..+||+|++|+|+|++||||+|++||+|||||+|++|++|||++||++||+|+|++||+|||+||+|++++||+
T Consensus       393 ~l~PC~~~~qf~v~~~~L~~~~~qRS~D~~lG~pfNi~~yalL~~~iA~~~gl~~G~~~~~~gd~HIY~~h~~~v~~ql~  472 (515)
T 3nrr_A          393 ALPPCHCFFQFYVSDNKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIA  472 (515)
T ss_dssp             SSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHT
T ss_pred             CCCCCCEEEEEEEECCEEEEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHHC
T ss_conf             88522158999995778899999520122125757899999999999998498054699994678970868999999867


Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             6987687799648868711262033799768768887875569
Q gi|254780956|r  222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |+|+++|+|+|++++++|+||++|||+|+||+|||+||||||-
T Consensus       473 R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~I~~~~a~  515 (515)
T 3nrr_A          473 RIPHPFPRLRLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMSA  515 (515)
T ss_dssp             SCCCCCCEEEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred             CCCCCCCEEEECCCCCCHHCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             7998998369789988540388417799688789985723359


No 11 
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynthesis, transferase; 2.20A {Encephalitozoon cuniculi gb-m1}
Probab=100.00  E-value=0  Score=733.98  Aligned_cols=264  Identities=52%  Similarity=0.990  Sum_probs=257.2

Q ss_pred             CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCC-CCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH
Q ss_conf             95799999999863926037998534777612046442369-81046420226889999999853666468886400321
Q gi|254780956|r    1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKG-FPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSI   79 (264)
Q Consensus         1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~g-fPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~i   79 (264)
                      |+||++|+++||++|+.++||||++|+|+||+++||||++| ||||||||+|||++++|+||||+|+||+++|+++||+|
T Consensus         9 e~qYl~ll~~IL~~G~~~~dRtG~~t~svfg~~~r~dl~~g~fPlLTtKkv~~k~~i~ElLWfl~G~t~~~~L~~~gv~i   88 (294)
T 3kgb_A            9 EHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVVEELLFFLRGETDSKVLEKKGVRI   88 (294)
T ss_dssp             HHHHHHHHHHHHHHCEEEC----CCEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCCTHHHHTTTCC-
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHCCCEE
T ss_conf             69999999999974987668999866998244469877889610586414207889999999974897355665148555


Q ss_pred             HHHHHHH-----------HCCCCCCCCCHHHCC--------CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHH
Q ss_conf             3565421-----------001387662010003--------677532688999999999808852367775169888320
Q gi|254780956|r   80 WDEWADK-----------DGELGPIYGVQWRSW--------PDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDK  140 (264)
Q Consensus        80 Wd~~a~~-----------~g~lg~~YG~qwR~~--------~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~  140 (264)
                      ||+|+++           +|++||+||+|||+|        .+++++++|||++||++||+||+|||+|+++|||.++++
T Consensus        89 Wd~~~~~~~~~~~~~~~~~gdlG~~YG~qwr~~~~~y~~~~~~~~~~~~DQl~~vI~~Lk~~P~sRR~i~s~wnp~d~~~  168 (294)
T 3kgb_A           89 WEKNGAKQFLQSVGIDREEGDLGPIYGFQWRHFGARYETSASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPTDLGS  168 (294)
T ss_dssp             --------------------CCCSCHHHHHHSBTCCCCCTTSCCTTSSBCHHHHHHHHHHHCTTCSCCEEECCCTTCHHH
T ss_pred             CCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHCC
T ss_conf             24435411466425677678454535388875033013455567898764999999987059423414887348999638


Q ss_pred             CCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHH
Q ss_conf             24211354024667688059999726244022202167999999999997622421111352273021003689999983
Q gi|254780956|r  141 MALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL  220 (264)
Q Consensus       141 ~~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql  220 (264)
                      |+|||||+.+||+|++|+|+|++||||||++||+||||++|++|++|||++||++||+|+|++||+|||+||+|++++||
T Consensus       169 ~~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~gd~HIY~nh~~~v~~ql  248 (294)
T 3kgb_A          169 MALPPCHVLFQFNVTDGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDSLRQQI  248 (294)
T ss_dssp             HHSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHT
T ss_pred             CCCCCCCCEEEEEECCCEEEEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEHHHHHHHHHHH
T ss_conf             89999986279965796078878720236554355209999999999999719842058987345574074799999995


Q ss_pred             CCCCCCCCEEEECCC--CCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             369876877996488--68711262033799768768887875569
Q gi|254780956|r  221 SRSPRTLPQMIINPN--IVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       221 ~R~p~~~P~L~i~~~--~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      +|+|+++|+|+|+++  .++|++|++|||+|+||+|||+||||||-
T Consensus       249 ~R~p~~~P~l~i~~~~~~~~i~~~~~~Df~l~~Y~~hp~Ik~~maa  294 (294)
T 3kgb_A          249 QRPPRAFPKLFVSPKGPRTEPEHFQYEDFELVGYDPHPAIKMNMSA  294 (294)
T ss_dssp             TSCCCCCCEEEECCSSCCCSGGGCCGGGEEEESCCCC---------
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEEHEEEECCCCCCCCCCCCCC
T ss_conf             7899999957978766767504455206799898899977846569


No 12 
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 1ju6_A* 1juj_A* 3egy_X* 3ehi_X* ...
Probab=100.00  E-value=0  Score=730.60  Aligned_cols=263  Identities=49%  Similarity=0.954  Sum_probs=257.3

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf             57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD   81 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd   81 (264)
                      .|||+|+++||++|+.++||||++|+|+||+++||||++|||||||||+|||++++||+|||+|+||+++|+++|++|||
T Consensus        13 ~qYl~ll~~Il~~G~~~~dRTG~~T~svfg~~~r~Dl~~gFPlLTTKkv~~K~ii~ELLWfl~G~tn~~~l~~~~~~iWd   92 (295)
T 3ed7_A           13 LQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWD   92 (295)
T ss_dssp             HHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCTTTTCCHHHHHHHHHHHHTTCCBGGGGCC-----CC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf             99999999999819887898999658980425797566798677743530788999999999858548999750121202


Q ss_pred             HHHHH------------HCCCCCCCCCHHHCCCC--------CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC
Q ss_conf             65421------------00138766201000367--------75326889999999998088523677751698883202
Q gi|254780956|r   82 EWADK------------DGELGPIYGVQWRSWPD--------YDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM  141 (264)
Q Consensus        82 ~~a~~------------~g~lg~~YG~qwR~~~~--------~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~  141 (264)
                      +|+++            +|++||+||+|||+|+.        +.++++||+++||++||+||+|||+|+++|||+++++|
T Consensus        93 ~~~~~~~~~~~~~~~~~~gdlG~~YG~qwr~~~~~y~~~~~~~~~~~~DQl~~vI~~Lk~~P~sRR~ii~~wnp~~~~~~  172 (295)
T 3ed7_A           93 ANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLM  172 (295)
T ss_dssp             SCSSCCGGGGSCHHHHHTTBCCSCTHHHHHHBTCCCCCSSSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGGGTTTS
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHCC
T ss_conf             01000025541544434674565554054414642345543578976349999999987598601102331688774102


Q ss_pred             CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC
Q ss_conf             42113540246676880599997262440222021679999999999976224211113522730210036899999833
Q gi|254780956|r  142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS  221 (264)
Q Consensus       142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~  221 (264)
                      +|||||+.+||+|++|+|+|+++|||+|++||+||||++|++|++|||++||++||+|+|++||+|||+||+|++++||+
T Consensus       173 ~l~PC~~~~qf~v~~~~L~~~~~qRS~D~~lG~pfNi~~~~lL~~~iA~~~gl~~G~~~~~~~d~HIY~~h~~~v~~ql~  252 (295)
T 3ed7_A          173 ALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQ  252 (295)
T ss_dssp             SSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHTT
T ss_pred             CHHHCEEEEEEEECCCCEEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEHHHHHHHHHHHC
T ss_conf             11223068999973895479997434212210344299999999999997398533899994124761757999999957


Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             6987687799648868711262033799768768887875569
Q gi|254780956|r  222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |+|+++|+|+|++++++|+||+++||+|+||+|||+|||||||
T Consensus       253 R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~~p~ik~~mAV  295 (295)
T 3ed7_A          253 REPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV  295 (295)
T ss_dssp             SCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCC----
T ss_pred             CCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             8999998568489987312688769799798789988867619


No 13 
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=100.00  E-value=0  Score=728.46  Aligned_cols=263  Identities=49%  Similarity=0.916  Sum_probs=257.3

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCC-CCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH
Q ss_conf             5799999999863926037998534777612046442369-810464202268899999998536664688864003213
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKG-FPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIW   80 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~g-fPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW   80 (264)
                      +|||+||++||++|+.+.||||++|+|+||++|||||++| ||||||||++||++++||+|||+|+||+++|++.|||||
T Consensus       238 ~qYl~l~~~il~~G~~~~~RtG~~t~s~fg~~~r~dl~~g~fPlLTtKk~~~k~i~~ELlWflsG~tni~~L~e~~v~IW  317 (521)
T 3irm_A          238 EQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEELLWFLRGETYAKKLSDKGVHIW  317 (521)
T ss_dssp             HHHHHHHHHHHHHCEEEECTTCCEEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTTTCCTT
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHCCCEEC
T ss_conf             99999999999719812589999778970334798668898762452343188899999999858951666752696048


Q ss_pred             HHHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHH
Q ss_conf             565421------------0013876620100036--------77532688999999999808852367775169888320
Q gi|254780956|r   81 DEWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDK  140 (264)
Q Consensus        81 d~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~  140 (264)
                      |+|+++            +|++||+||+|||+|+        .++++++|||++||++||+||+|||+|+++|||+++++
T Consensus       318 d~n~~~~~~~~~~~~~~~~gdlG~~YG~qwr~~~~~y~~~~~~~~~~~iDQl~~vi~~Lk~~p~sRr~i~~~wnp~~~~~  397 (521)
T 3irm_A          318 DDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTHHDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPR  397 (521)
T ss_dssp             STTTSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGGG
T ss_pred             CCCCCHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCC
T ss_conf             88522436765452100134566202655213453104666677886429999999987519974118988425788457


Q ss_pred             CCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHH
Q ss_conf             24211354024667688059999726244022202167999999999997622421111352273021003689999983
Q gi|254780956|r  141 MALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL  220 (264)
Q Consensus       141 ~~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql  220 (264)
                      |+|||||+.+||+|++|+|+|+++|||+|++||+||||++|++|++|||+.||++||+|+|++||+|||+||++++++||
T Consensus       398 ~~l~pC~~~~qf~v~~g~L~~~~~qRS~D~~lG~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~v~~~l  477 (521)
T 3irm_A          398 MALPPCHLLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQL  477 (521)
T ss_dssp             SSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHT
T ss_pred             CCCCCCCCEEEEEECCCEEEEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHH
T ss_conf             88899983699998899899999833000103675769999999999999869805569999577797176799999985


Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             36987687799648868711262033799768768887875569
Q gi|254780956|r  221 SRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       221 ~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      +|+|+++|+|+|++++++|+||+++||+|+||+|||+|||||||
T Consensus       478 ~R~p~~~P~l~i~~~~~~i~d~~~~D~~l~~Y~~~p~i~~~~av  521 (521)
T 3irm_A          478 KRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV  521 (521)
T ss_dssp             TSCCCCCCEEEESCCCSBGGGCCGGGEEEESCCCCCCCSCCCC-
T ss_pred             CCCCCCCCEEEECCCCCCHHCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             78998998479799877440588769799688789987756519


No 14 
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=100.00  E-value=0  Score=698.81  Aligned_cols=262  Identities=40%  Similarity=0.735  Sum_probs=254.3

Q ss_pred             HHHHHHHHHHHHCCCEE----------CCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCC-HH
Q ss_conf             57999999998639260----------37998534777612046442369810464202268899999998536664-68
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDR----------RDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSN-VS   70 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~----------~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn-~~   70 (264)
                      |||++|+++||+||+.+          .||||++|+|+||+++|||++ +||||||||++||++++|++|||+|+|| ++
T Consensus         5 ~qYl~ll~~Il~~G~~~~~~~~r~~~~~drtg~~t~sifg~~~~~d~~-~fPllTtKk~~~k~~i~EllWfl~G~tn~~~   83 (278)
T 1bkp_A            5 KQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNS-EVPILTTKKVAWKTAIKELLWIWQLKSNDVN   83 (278)
T ss_dssp             HHHHHHHHHHHHHCEECTTSCCCCBBTTTCCBCCEEEEEEEEEEECSS-SCCCCSSSCCCHHHHHHHHHHHHTSCCCBHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCC-CCCCEEECCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf             999999999998486743444444324688888768865715897189-9970142030389999999999716874156


Q ss_pred             HHHHHCCCHHHHHHHHHCCCCCCCCCHHHCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCC
Q ss_conf             8864003213565421001387662010003-677532688999999999808852367775169888320242113540
Q gi|254780956|r   71 YLHRHGVSIWDEWADKDGELGPIYGVQWRSW-PDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCL  149 (264)
Q Consensus        71 ~l~~~~~~iWd~~a~~~g~lg~~YG~qwR~~-~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~  149 (264)
                      +|.++|++||++|++++|++|++||+|||++ ..+.++++||+++||++||+||+|||+|+++|||+++++|+|||||+.
T Consensus        84 ~l~~~~~~iW~~~~~~~g~~~~~YG~~~~~~~~~~~~~~~DQl~~vi~~Lk~nP~sRR~ii~~wnp~~~~~~~lpPC~~~  163 (278)
T 1bkp_A           84 DLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYE  163 (278)
T ss_dssp             HHHTTTCCTTGGGCCTTSBCBSCTHHHHHCCCEEETTEEECHHHHHHHHHHHSTTCSCCEEESCCTTTGGGBSSCCSEEE
T ss_pred             HHHHCCCCEEHHCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCHHHHCCCCCCCEEEE
T ss_conf             78762663012105455535776673330241356886522558899987029742320010368166537877742567


Q ss_pred             EEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCE
Q ss_conf             24667688059999726244022202167999999999997622421111352273021003689999983369876877
Q gi|254780956|r  150 FQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQ  229 (264)
Q Consensus       150 ~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~  229 (264)
                      +||+|++|+|+|++||||||++||+||||++|++|++|||+.||++||+|+|++||+|||+||+|++++||+|+|+++|+
T Consensus       164 ~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~syalL~~~iA~~~gl~~G~~~~~~gd~HIY~~h~~~v~~ql~R~p~~~P~  243 (278)
T 1bkp_A          164 TQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPE  243 (278)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCCE
T ss_pred             EEEEEECCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCCE
T ss_conf             99998089737999814155563378519999999999999729977548998401476374799999985789999998


Q ss_pred             EEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             99648868711262033799768768887875569
Q gi|254780956|r  230 MIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       230 L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |+|++++++|+||++|||+|+||+|||+|||||||
T Consensus       244 l~i~~~~~~i~d~~~~Df~l~~Y~~~p~ik~~~aV  278 (278)
T 1bkp_A          244 LWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV  278 (278)
T ss_dssp             EEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCBC
T ss_pred             EEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             89789988531398607799798789988757619


No 15 
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1
Probab=100.00  E-value=0  Score=703.47  Aligned_cols=259  Identities=46%  Similarity=0.841  Sum_probs=247.5

Q ss_pred             CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHH-----
Q ss_conf             957999999998639260379985347776120464423698104642022688999999985366646888640-----
Q gi|254780956|r    1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRH-----   75 (264)
Q Consensus         1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~-----   75 (264)
                      ||||++|+++||++|+.++||||++|+|+||+++||||++|||||||||++||++++|++|||+|+||+++|++.     
T Consensus         1 MkQYl~ll~~IL~~G~~~~dRtG~~T~svFG~~~rfdl~~gfPlLTTKkv~~k~~i~ELlWfl~G~tni~~L~~~~~~~~   80 (286)
T 1tis_A            1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELIWFLSGSTNVNDLRLIQHDSL   80 (286)
T ss_dssp             CCHHHHHHHHHHTTCCEECCSSCSCEEEEECCEEEEEGGGCCCCCCSSCCCCHHHHHHHHHHHHTCCBHHHHHHHHHSCS
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
T ss_conf             96899999999985988569999876886032378637779972232121057789999999836987999997505553


Q ss_pred             --CCCHHHHH--------HHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCC
Q ss_conf             --03213565--------42100138766201000367753268899999999980885236777516988832024211
Q gi|254780956|r   76 --GVSIWDEW--------ADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPP  145 (264)
Q Consensus        76 --~~~iWd~~--------a~~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpP  145 (264)
                        +.++|+++        +.++|++|++||+|||+|.     ++||+++||++||+||+|||+|+++|||.++++|++||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~g~lG~~YG~qwR~~~-----~~DQl~~vi~~Lk~~p~sRR~i~s~wnp~~~~~~~lpP  155 (286)
T 1tis_A           81 IQGKTVWDENYENQAKDLGYHSGELGPIYGKQWRDFG-----GVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPP  155 (286)
T ss_dssp             SSSCCTTHHHHTTTTGGGTCCTTBCCSCHHHHHHCBT-----TBCHHHHHHHHHHHSTTCSCCBCCCCCGGGGGGCSSCC
T ss_pred             CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEECCCC-----CCCHHHHHHHHHHHCCCHHHEEEECCCHHHHCCCCCCC
T ss_conf             3665234210000222221458861532362432689-----72699999999864985013000015876612678865


Q ss_pred             CCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCC
Q ss_conf             35402466768805999972624402220216799999999999762242111135227302100368999998336987
Q gi|254780956|r  146 CHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPR  225 (264)
Q Consensus       146 C~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~  225 (264)
                      ||..+||+|++|+|+|+++|||||++||+|||+++|++|++|||++||++||+|+|++||+|||+||++++++||+|+|+
T Consensus       156 C~~~~qf~v~~~~L~~~~~qRS~D~~lG~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~d~HIY~~h~~~~~~ql~R~p~  235 (286)
T 1tis_A          156 CHMFYQFNVRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPK  235 (286)
T ss_dssp             SEEEEEEEECSSEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEESSCCTTTGGGSSCCCC
T ss_pred             CCEEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEHHHHHHHHHHHCCCCC
T ss_conf             64046889659808999985154401446515999999999999985566752899714348637479999999667998


Q ss_pred             CCCEEEECC------------CCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             687799648------------868711262033799768768887875569
Q gi|254780956|r  226 TLPQMIINP------------NIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       226 ~~P~L~i~~------------~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      ++|+|+|++            ++++|++|++|||+|+||+|||+|||||||
T Consensus       236 ~~P~l~i~~~~~~~~~~~~~~~~~~i~~~~~~Df~l~~Y~~hp~ik~~~av  286 (286)
T 1tis_A          236 ELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV  286 (286)
T ss_dssp             SCCCCEECCCCGGGGGSCHHHHHHHHHTCCGGGEECSSCCCCCCCCCCCCC
T ss_pred             CCCCEEECCCCCCCCCCCCCCCCCHHHCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             898068657865443222344556040398226799797789987757629


No 16 
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=100.00  E-value=0  Score=522.07  Aligned_cols=214  Identities=24%  Similarity=0.288  Sum_probs=201.3

Q ss_pred             CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH
Q ss_conf             95799999999863926037998534777612046442369810464202268899999998536664688864003213
Q gi|254780956|r    1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIW   80 (264)
Q Consensus         1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW   80 (264)
                      |++|...+..+|+||+++.||||++|+|+||++|++|++++||++|||+     +++||+||||||||+++|.+++++||
T Consensus         8 ~~~~r~~l~~~l~~g~~~~drtG~~T~~i~g~~~~~d~~~~f~~~ttk~-----i~~EllWflsGstni~~L~~~~~~iW   82 (246)
T 1b5e_A            8 VEEIRLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEPFIFGALNDEY-----IQRELEWYKSKSLFVKDIPGETPKIW   82 (246)
T ss_dssp             HHHHHHHHHHHHHTTCCEECTTSCEEEEEEEEEEECCSSCSSSCCCHHH-----HHHHHHHHHHTCSBGGGSSSSCCHHH
T ss_pred             HHHHHHHHHHHHHCCCEECCCCCCCEEEECCEEEEEECCCCCCCCCHHH-----HHHHHHHHHHCCCCHHHHHHCCCCHH
T ss_conf             9999999999986798404899996426465799986776778676557-----99999999837987999864683243


Q ss_pred             HHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHH-----HHHHCCCCCCCCCEEEEEC
Q ss_conf             56542100138766201000367753268899999999980885236777516988-----8320242113540246676
Q gi|254780956|r   81 DEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVA-----LIDKMALPPCHCLFQFYVD  155 (264)
Q Consensus        81 d~~a~~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~-----~~~~~~lpPC~~~~qf~v~  155 (264)
                      |+|++++|++||+||+||+.     +.++||+++||++||+||+|||+|+++|||.     +.++|++||||..+||+|+
T Consensus        83 ~~~a~~~g~lg~~YG~r~~~-----~~~~dQi~~vI~~Lk~nP~SRR~iv~~WnP~~~~d~~~~~~~lpPC~~~~qF~Vr  157 (246)
T 1b5e_A           83 QQVASSKGEINSNYGWAIWS-----EDNYAQYDMCLAELGQNPDSRRGIMIYTRPSMQFDYNKDGMSDFMCTNTVQYLIR  157 (246)
T ss_dssp             HHHSCTTSBCSCCHHHHHHC-----GGGTCHHHHHHHHHHHCTTCSCCEEECCCTTHHHHTTGGGCCCCCCEEEEEEEEE
T ss_pred             HHHCCCCCCCCCCCCCCCCC-----CCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf             56405278625888865147-----7652349999999860999772799961620022322012788887477999992


Q ss_pred             CCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHC-------CCCEEEEEECCCCEEEHHHHHHHHHHHCCCC
Q ss_conf             88059999726244022202167999999999997622-------4211113522730210036899999833698
Q gi|254780956|r  156 NGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIG-------FQYGEFIHTLGDVHLYNNHFEQADLQLSRSP  224 (264)
Q Consensus       156 ~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~g-------l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p  224 (264)
                      +|+|+|+++|||||+|+|+|||+|+|++|+++||..+|       ++||+|+|+++|+|||+||+++|++++++.+
T Consensus       158 ~gkL~~~v~qRS~D~~lG~pfNia~~~~Ll~~ia~~l~~~~~~~~l~~G~~~h~~gd~HIYenh~~~Ve~~l~~~~  233 (246)
T 1b5e_A          158 DKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGSLHVYSRHFYLVDHWWKTGE  233 (246)
T ss_dssp             TTEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEEEEEEEEEGGGHHHHHHHHHHCC
T ss_pred             CCEEEEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_conf             9989999996154433127538999999999999996567654674044999998878985878999999986324


No 17 
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=51.13  E-value=12  Score=17.08  Aligned_cols=49  Identities=18%  Similarity=0.249  Sum_probs=38.3

Q ss_pred             HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf             997622-42111135227302100368999998336987687799648868
Q gi|254780956|r  188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIV  237 (264)
Q Consensus       188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~  237 (264)
                      .|..+| +.+|+.+..+....+..-..+.+.+.|+..+-+ =+|+|-|..+
T Consensus        37 ~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~-v~L~v~ps~~   86 (88)
T 1kwa_A           37 MIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGS-ITFKIVPSYR   86 (88)
T ss_dssp             HHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEE-EEEEEECCCC
T ss_pred             HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCC-EEEEEEECCC
T ss_conf             7998399988999999999997799899999999769996-9999984776


No 18 
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=44.34  E-value=16  Score=16.41  Aligned_cols=48  Identities=10%  Similarity=0.148  Sum_probs=35.1

Q ss_pred             HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf             9762242111135227302100368999998336987687799648868
Q gi|254780956|r  189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIV  237 (264)
Q Consensus       189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~  237 (264)
                      |...|+++|+.+..+...-+-.-..+++...|++.+.+ =+|.+.+..+
T Consensus        40 A~~~gL~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~-v~L~V~R~~~   87 (89)
T 2q3g_A           40 AAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGER-LSLGLSRAIT   87 (89)
T ss_dssp             HHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTE-EEEEEEEECC
T ss_pred             HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEECCC
T ss_conf             89859999999999999999999899999998769998-9999997985


No 19 
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=35.23  E-value=22  Score=15.53  Aligned_cols=48  Identities=21%  Similarity=0.224  Sum_probs=37.6

Q ss_pred             HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             997622-421111352273021003689999983369876877996488
Q gi|254780956|r  188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPN  235 (264)
Q Consensus       188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~  235 (264)
                      .|..+| +++|+.+..+.+..+-.--.+++.+.|+..|..--+|.|.+.
T Consensus        56 ~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~llk~~~~~~V~L~v~r~  104 (108)
T 2d92_A           56 VAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG  104 (108)
T ss_dssp             HHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred             HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf             5896399996999999999998899899999999628998699999948


No 20 
>1zd0_A Hypothetical protein PF0523; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: d.329.1.1
Probab=33.87  E-value=15  Score=16.60  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=24.1

Q ss_pred             EEHHHHHHHHHHHHHHCCCCCHHH-HHHHCCC
Q ss_conf             202268899999998536664688-8640032
Q gi|254780956|r   48 KKVHWKSVVHELLWFLRGDSNVSY-LHRHGVS   78 (264)
Q Consensus        48 kk~~~k~~i~EllW~l~G~tn~~~-l~~~~~~   78 (264)
                      .++-.|++-.|++.++||++++.. |+..|++
T Consensus        67 g~~~ar~l~~EiL~~lSg~rqI~~Alk~~Gi~   98 (150)
T 1zd0_A           67 GRSIAKTVPGEILVRLSGNRQIKEAIKKVGAK   98 (150)
T ss_dssp             TCCSSSSHHHHHHHHHHTCSSHHHHHHHHBCC
T ss_pred             CCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf             98442872678988856614399999984889


No 21 
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consortium, SGC, unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=32.62  E-value=25  Score=15.27  Aligned_cols=46  Identities=11%  Similarity=0.151  Sum_probs=34.5

Q ss_pred             HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             99762242111135227302100368999998336987687799648
Q gi|254780956|r  188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINP  234 (264)
Q Consensus       188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~  234 (264)
                      .|...|+++|+.+..+....+-.-..+++...|++.+.+ =+|.|.+
T Consensus        39 ~A~~~gL~~GD~Il~INg~~v~~~~~~e~~~~l~~~~~~-v~L~V~R   84 (91)
T 2pkt_A           39 KAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDN-LTLTVAR   84 (91)
T ss_dssp             HHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE-EEEEEEE
T ss_pred             HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEE
T ss_conf             899879999999998999999999899999998779982-9999998


No 22 
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=32.09  E-value=25  Score=15.22  Aligned_cols=48  Identities=19%  Similarity=0.163  Sum_probs=37.0

Q ss_pred             HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf             99762242111135227302100368999998336987687799648868
Q gi|254780956|r  188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIV  237 (264)
Q Consensus       188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~  237 (264)
                      -|...|+++|+.+..+++..|..  ++.+...++..|-.--++.+.++-+
T Consensus        16 pA~~AGl~~GD~I~~ing~~i~~--~~~~~~~i~~~~g~~v~l~v~R~g~   63 (91)
T 2zpm_A           16 AASXAGLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGS   63 (91)
T ss_dssp             HHHHTTCCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEEEETTE
T ss_pred             HHHHCCCCCCCEEEEECCEEECC--HHHHHHHHHHCCCCCEEEEEEECCE
T ss_conf             37765899999999979988489--9999999983979938999999999


No 23 
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=31.80  E-value=26  Score=15.19  Aligned_cols=47  Identities=19%  Similarity=0.169  Sum_probs=34.8

Q ss_pred             HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             997622421111352273021003689999983369876877996488
Q gi|254780956|r  188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPN  235 (264)
Q Consensus       188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~  235 (264)
                      .|..+|+.+|+.+..+.+..+-.--.+.+...|+..+.. -+|.|.++
T Consensus        58 ~A~~~gL~~GD~Il~VNg~~v~~~~~~~vv~~lk~~~~~-v~L~V~R~  104 (110)
T 1x5q_A           58 PAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTA-VQMRVWRE  104 (110)
T ss_dssp             HHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSE-EEEEEEEC
T ss_pred             HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEEC
T ss_conf             679758999999999999998999899999998779997-99999989


No 24 
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, alternative splicing; 1.5A {Homo sapiens}
Probab=29.34  E-value=28  Score=14.93  Aligned_cols=47  Identities=15%  Similarity=0.235  Sum_probs=36.8

Q ss_pred             HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             997622-421111352273021003689999983369876877996488
Q gi|254780956|r  188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPN  235 (264)
Q Consensus       188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~  235 (264)
                      .|..+| +.+|+.+..+.+..+..-..+++.+.|++.|.+ -+|.|.++
T Consensus        44 ~A~~~g~L~~GD~Il~INg~~v~~~~~~e~~~~l~~~~~~-v~L~v~r~   91 (97)
T 2jil_A           44 PADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE-AALLIEYD   91 (97)
T ss_dssp             HHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSE-EEEEEEEE
T ss_pred             HHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEEC
T ss_conf             6897098989999999999997899899999999829996-99999978


No 25 
>3enp_A TP53RK-binding protein; keops complex telomere kinase regulator, alternative splicing, cytoplasm, nucleus, hydrolase; 2.48A {Homo sapiens}
Probab=27.98  E-value=24  Score=15.32  Aligned_cols=30  Identities=27%  Similarity=0.524  Sum_probs=21.0

Q ss_pred             EHHHHHHHHHHHHHHCCCCCHHH-HHHHCCC
Q ss_conf             02268899999998536664688-8640032
Q gi|254780956|r   49 KVHWKSVVHELLWFLRGDSNVSY-LHRHGVS   78 (264)
Q Consensus        49 k~~~k~~i~EllW~l~G~tn~~~-l~~~~~~   78 (264)
                      ++--|++-.|++.+|||++++.. |+..|++
T Consensus        71 ~~~tr~l~~Eil~~lS~t~qI~~Alk~fGi~  101 (177)
T 3enp_A           71 KMKTRTLSTEIIFNLSPNNNISEALKKFGIS  101 (177)
T ss_dssp             CCSSSSHHHHHHHHHCSSSCHHHHHHHHBCC
T ss_pred             CCCCCCHHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf             9653853889999867645288999983988


No 26 
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=27.91  E-value=15  Score=16.67  Aligned_cols=44  Identities=9%  Similarity=0.150  Sum_probs=33.2

Q ss_pred             HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             976224211113522730210036899999833698768779964
Q gi|254780956|r  189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN  233 (264)
Q Consensus       189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~  233 (264)
                      |...|+++|+.+..+.+..+-.--.+++.+.|+..+.. .+|.+.
T Consensus        46 A~~~gL~~GD~Il~INg~~v~~~s~~~v~~lik~~~~~-v~l~V~   89 (98)
T 2jxo_A           46 AEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE-TKLLVV   89 (98)
T ss_dssp             HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTE-EEEEEC
T ss_pred             HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEE
T ss_conf             99879999999999999998899999999998779997-999998


No 27 
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=27.76  E-value=30  Score=14.77  Aligned_cols=48  Identities=17%  Similarity=0.142  Sum_probs=35.4

Q ss_pred             HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf             997622-4211113522730210036899999833698768779964886
Q gi|254780956|r  188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNI  236 (264)
Q Consensus       188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~  236 (264)
                      .|..+| +++|+.+..+.+..+..--.+++...|+..+. .=+|.+.++.
T Consensus        49 ~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~lk~~~~-~v~L~V~R~~   97 (101)
T 2jik_A           49 AAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGY-AVSLRVQHRL   97 (101)
T ss_dssp             HHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCS-EEEEEEEEES
T ss_pred             HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEECC
T ss_conf             389739999999999999999889989999999983999-7999999589


No 28 
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=26.29  E-value=32  Score=14.60  Aligned_cols=47  Identities=19%  Similarity=0.155  Sum_probs=34.6

Q ss_pred             HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf             976224211113522730210036899999833698768779964886
Q gi|254780956|r  189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNI  236 (264)
Q Consensus       189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~  236 (264)
                      |...|+++|+.+..+.+..+..--..++...+++.+. .=+|.+.++.
T Consensus        47 A~~~gL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~~   93 (97)
T 2w4f_A           47 AARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGT-AVQMRVWRER   93 (97)
T ss_dssp             HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCS-EEEEEEECCS
T ss_pred             HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEECC
T ss_conf             8985999999999999999999999999999768989-8999999899


No 29 
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=24.63  E-value=34  Score=14.41  Aligned_cols=49  Identities=14%  Similarity=0.091  Sum_probs=37.4

Q ss_pred             HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCC-CEEEECCCC
Q ss_conf             997622-4211113522730210036899999833698768-779964886
Q gi|254780956|r  188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTL-PQMIINPNI  236 (264)
Q Consensus       188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~-P~L~i~~~~  236 (264)
                      .|..+| +.+|+.+..+.+..+-.-..+++.+.|+..+.+. =+|.+.+..
T Consensus        51 ~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~ll~~~~~~~~v~l~v~r~~  101 (111)
T 2koj_A           51 AAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQE  101 (111)
T ss_dssp             HHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECC
T ss_pred             HHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             589719999999999999999889999999999981899998999998289


No 30 
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=24.13  E-value=35  Score=14.36  Aligned_cols=50  Identities=14%  Similarity=0.217  Sum_probs=35.9

Q ss_pred             HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf             997622-421111352273021003689999983369876877996488687
Q gi|254780956|r  188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVD  238 (264)
Q Consensus       188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~  238 (264)
                      .|...| +++|+.+..+....+..--.+.+.+.|++.+.+ -+|.|.++..-
T Consensus       147 ~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~lk~~~~~-v~L~V~Rd~~~  197 (200)
T 2qt5_A          147 PADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE-ATLLIEYDVSV  197 (200)
T ss_dssp             HHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSE-EEEEEEEEEEC
T ss_pred             HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCE-EEEEEEECCCC
T ss_conf             5673389999989998999898999899999999838997-89999979976


No 31 
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.06  E-value=35  Score=14.35  Aligned_cols=47  Identities=17%  Similarity=0.196  Sum_probs=32.4

Q ss_pred             HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             997622421111352273021003689999983369876877996488
Q gi|254780956|r  188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPN  235 (264)
Q Consensus       188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~  235 (264)
                      -|...||++|+.+..+...-|..--.+++.+.|++.... =+|.+-++
T Consensus        73 pA~~aGL~~GD~Il~Ing~~v~~~~~~e~v~~i~~~g~~-v~L~V~r~  119 (126)
T 2yuy_A           73 PAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTT-LELSVMPK  119 (126)
T ss_dssp             HHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHTCTTE-EEEECCCC
T ss_pred             HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEEC
T ss_conf             799869988999999999998899999999998779997-99999969


No 32 
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=23.83  E-value=36  Score=14.32  Aligned_cols=46  Identities=17%  Similarity=0.101  Sum_probs=33.5

Q ss_pred             HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             9976224211113522730210036899999833698768779964
Q gi|254780956|r  188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN  233 (264)
Q Consensus       188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~  233 (264)
                      .|...|+.+|+.+..+.+.-+-.-..+++.+.|+..+...=+|.+-
T Consensus        48 ~A~~aGL~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~~v~l~v~   93 (111)
T 1vae_A           48 SASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV   93 (111)
T ss_dssp             SHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEE
T ss_pred             HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEE
T ss_conf             7898499889999999999989998999999987689986899997


No 33 
>1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A {Escherichia coli K12} SCOP: f.1.1.1
Probab=23.82  E-value=24  Score=15.36  Aligned_cols=46  Identities=24%  Similarity=0.404  Sum_probs=32.1

Q ss_pred             CCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCC------HHHHHHHHCCHHHHHHCC
Q ss_conf             138766201000367753268899999999980885------236777516988832024
Q gi|254780956|r   89 ELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPY------SRRHIVSAWNVALIDKMA  142 (264)
Q Consensus        89 ~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~------sRR~i~~~wnp~~~~~~~  142 (264)
                      ++-..+|.+.|+        +|+=-..+++.++||+      +|-+|..+|.--+.++||
T Consensus       162 ~iKnfQGKkIRs--------~deALksfeK~k~n~nkKin~kDR~AI~nALesid~~dmA  213 (321)
T 1a87_A          162 DIKNFHGRNIRS--------YNEAMASLNKVLANPKMKVNKSDKDAIVNAWKQVNAKDMA  213 (321)
T ss_dssp             HHHTCCGGGCCC--------HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHCCCCCCC--------HHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHCCHHHHH
T ss_conf             866522771367--------9999999998740621221431499999999972899999


No 34 
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=23.40  E-value=36  Score=14.27  Aligned_cols=38  Identities=13%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCC
Q ss_conf             97622421111352273021003689999983369876
Q gi|254780956|r  189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRT  226 (264)
Q Consensus       189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~  226 (264)
                      |..+||++|+.+..+...-+..--.+++.+.|++.+..
T Consensus        50 A~~~GL~~GD~I~~Ing~~v~~~~~~~~~~~i~~~~~~   87 (96)
T 2ego_A           50 AQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNV   87 (96)
T ss_dssp             HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTE
T ss_pred             HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE
T ss_conf             99858988999999999998899999999998769998


No 35 
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.35  E-value=36  Score=14.26  Aligned_cols=44  Identities=5%  Similarity=0.143  Sum_probs=31.2

Q ss_pred             HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             976224211113522730210036899999833698768779964
Q gi|254780956|r  189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN  233 (264)
Q Consensus       189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~  233 (264)
                      |...|+++|+.+..+.+..+-.-..+++...|+..+.. =+|.+.
T Consensus        43 A~~~gL~~GD~Il~INg~~v~~~~~~ev~~~i~~~~~~-v~l~V~   86 (102)
T 2d90_A           43 AEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ-TTLLVL   86 (102)
T ss_dssp             TTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTE-EEEEEC
T ss_pred             HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEE
T ss_conf             99869988999999999998999899999999749996-999999


No 36 
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=22.83  E-value=37  Score=14.20  Aligned_cols=48  Identities=13%  Similarity=0.223  Sum_probs=37.5

Q ss_pred             HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf             997622-4211113522730210036899999833698768779964886
Q gi|254780956|r  188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNI  236 (264)
Q Consensus       188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~  236 (264)
                      .|..+| +++|+.+..+.+.-+-.-..+++...|+..+. .-+|.|.++.
T Consensus        61 ~A~~~G~l~~GD~Il~VNg~~v~~~t~~ev~~~i~~~~~-~v~L~v~r~~  109 (117)
T 1ujd_A           61 SAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSG-EAEICVRLDL  109 (117)
T ss_dssp             HHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSS-CEEEEEESSC
T ss_pred             HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEECC
T ss_conf             489849999999999999999789979999999983999-5999999799


No 37 
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=22.78  E-value=37  Score=14.20  Aligned_cols=36  Identities=22%  Similarity=0.130  Sum_probs=30.0

Q ss_pred             HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCC
Q ss_conf             997622421111352273021003689999983369
Q gi|254780956|r  188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRS  223 (264)
Q Consensus       188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~  223 (264)
                      .|...||.+|+.+..+...-+-.-..+++...++..
T Consensus        47 ~A~~~GL~~GD~Il~INg~~v~~~~~~~~~~ll~~~   82 (94)
T 3kzd_A           47 LASKKGLKAGDEILEINNRAADALNSSMLKDFLSQP   82 (94)
T ss_dssp             HHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHSS
T ss_pred             HHHHHCCCCCCEEEEECCEECCCCCHHHHHHHHHCC
T ss_conf             889818847899999999998999999999998669


No 38 
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=22.35  E-value=29  Score=14.83  Aligned_cols=37  Identities=24%  Similarity=0.395  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHHHHHCCCC------HHHHHHHHCCHHHHHHCC
Q ss_conf             3268899999999980885------236777516988832024
Q gi|254780956|r  106 GNVIDQISSIVQSLRADPY------SRRHIVSAWNVALIDKMA  142 (264)
Q Consensus       106 ~~~~DQl~~vi~~Lk~np~------sRR~i~~~wnp~~~~~~~  142 (264)
                      -+.+|+=-...++.++||+      +|-+|..+|..-+.++|+
T Consensus        53 IRs~~dAl~s~eK~k~nlnkKi~~kDr~AI~nAles~d~~~~A   95 (204)
T 1col_A           53 IRSFDDAMASLNKITANPAMKINKADRDALVNAWKHVDAQDMA   95 (204)
T ss_dssp             CCCHHHHHHHHHHHHTSGGGCCCHHHHHHHHHHHHTCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHCCHHHHH
T ss_conf             5789999999999874665551351499999999974899999


No 39 
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=21.86  E-value=39  Score=14.08  Aligned_cols=45  Identities=11%  Similarity=0.086  Sum_probs=34.5

Q ss_pred             HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             9976224211113522730210036899999833698768779964
Q gi|254780956|r  188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN  233 (264)
Q Consensus       188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~  233 (264)
                      .|...|+++|+.+..+++..+..--.+.+...|+..+... +|.+.
T Consensus        44 ~A~~~GL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v-~l~V~   88 (91)
T 1m5z_A           44 PGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKL-DLVIS   88 (91)
T ss_dssp             HHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEE-EEEEE
T ss_pred             HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE-EEEEE
T ss_conf             4552716399999999999989999999999987699989-99999


No 40 
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.50  E-value=40  Score=14.04  Aligned_cols=46  Identities=11%  Similarity=0.154  Sum_probs=33.5

Q ss_pred             HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             97622421111352273021003689999983369876877996488
Q gi|254780956|r  189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPN  235 (264)
Q Consensus       189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~  235 (264)
                      |...+|++|+.+..+...-+-.-..+++...|++.+... +|.+.+.
T Consensus        45 a~~~gL~~GD~Il~VNg~~v~~~s~~evv~ll~~~~~~v-~L~V~r~   90 (94)
T 2eeg_A           45 AALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHL-TLSVSSG   90 (94)
T ss_dssp             HHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCE-EEEEECC
T ss_pred             HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE-EEEEEEC
T ss_conf             998799999999989999999998999999997699849-9999928


No 41 
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=20.99  E-value=41  Score=13.97  Aligned_cols=46  Identities=13%  Similarity=0.143  Sum_probs=35.5

Q ss_pred             HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             997622-42111135227302100368999998336987687799648
Q gi|254780956|r  188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINP  234 (264)
Q Consensus       188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~  234 (264)
                      .|..+| +.+|+.+..+....+..-..+++.+.|+..+-+ =+|.+.+
T Consensus        43 ~A~~~g~L~~GD~Il~INg~~v~~~~~~~v~~ll~~~~~~-v~L~v~R   89 (96)
T 2qkv_A           43 YPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGK-VSMEVTR   89 (96)
T ss_dssp             CHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE-EEEEEEC
T ss_pred             HHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEC
T ss_conf             8998099988999999999997799899999999779985-9999983


No 42 
>1u39_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.83  E-value=41  Score=13.95  Aligned_cols=44  Identities=18%  Similarity=0.080  Sum_probs=34.4

Q ss_pred             HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             976224211113522730210036899999833698768779964
Q gi|254780956|r  189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN  233 (264)
Q Consensus       189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~  233 (264)
                      |...|+.+|+.+..+.+.-+-.-..+++.+.|++.+.. -+|+|-
T Consensus        35 A~~~gL~~GD~Il~VNg~~v~~~s~~~~~~ll~~~~~~-v~l~v~   78 (80)
T 1u39_A           35 AERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGE-IHMKTM   78 (80)
T ss_dssp             HHHHTCCTTEEECEETTEEGGGSCHHHHHHHHHTCCEE-EEEEEE
T ss_pred             HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEE
T ss_conf             99869999999999999997999799999998669898-999997


No 43 
>2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, membrane protein; 2.50A {Escherichia coli}
Probab=20.77  E-value=17  Score=16.34  Aligned_cols=33  Identities=15%  Similarity=0.127  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHCCCC------HHHHHHHHCCHHHHHHCC
Q ss_conf             899999999980885------236777516988832024
Q gi|254780956|r  110 DQISSIVQSLRADPY------SRRHIVSAWNVALIDKMA  142 (264)
Q Consensus       110 DQl~~vi~~Lk~np~------sRR~i~~~wnp~~~~~~~  142 (264)
                      |+=-...++.++||+      +|.+|..+|.--+.++|+
T Consensus        56 ~dAl~s~eK~~~n~~~Kin~kDr~AI~nAl~~~d~~~~a   94 (191)
T 2i88_A           56 NEALAAFEKYKDVLNKKFSKADRDAIFNALASVKYDDWA   94 (191)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTTCCTHHHH
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             999999999872766652260399999999974899999


No 44 
>2k8y_A Uncharacterized protein MJ0187; regulatory subunit of the BUD32 kinase, component of the keops complex, structural genomics, PSI-2; NMR {Methanocaldococcus jannaschii} PDB: 3enh_C*
Probab=20.66  E-value=35  Score=14.34  Aligned_cols=32  Identities=28%  Similarity=0.209  Sum_probs=24.0

Q ss_pred             EEEHHHHHHHHHHHHHHCCCCCHHH-HHHHCCC
Q ss_conf             4202268899999998536664688-8640032
Q gi|254780956|r   47 TKKVHWKSVVHELLWFLRGDSNVSY-LHRHGVS   78 (264)
Q Consensus        47 tkk~~~k~~i~EllW~l~G~tn~~~-l~~~~~~   78 (264)
                      ++++-.|+.-.|++.++||++++.. |...|++
T Consensus        50 ~~~~~ar~~~~Eil~~ls~~~qI~~A~~~~g~~   82 (150)
T 2k8y_A           50 TKKPIAKSFWMEILVRASGQRQIHEAIKIIGAK   82 (150)
T ss_dssp             HCCCSCSSHHHHHHHHTTTSCCHHHHHHHHBCC
T ss_pred             HCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf             088443866999999975623199999972867


No 45 
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=20.09  E-value=42  Score=13.86  Aligned_cols=46  Identities=20%  Similarity=0.102  Sum_probs=36.0

Q ss_pred             HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             9976224211113522730210036899999833698768779964
Q gi|254780956|r  188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN  233 (264)
Q Consensus       188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~  233 (264)
                      .|...|+++|+.+..+.+.-+=.-..+++.+.|+..+...-+|.+-
T Consensus        56 ~A~~aGL~~GD~Il~INg~~v~~~t~~evv~~lr~~~~~~v~L~Vv  101 (109)
T 2vsv_A           56 SASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVV  101 (109)
T ss_dssp             HHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEE
T ss_pred             HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEE
T ss_conf             4784778999999999999989998999999987789974899997


Done!