Query gi|254780956|ref|YP_003065369.1| thymidylate synthase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 264 No_of_seqs 158 out of 1666 Neff 5.7 Searched_HMMs 23785 Date Tue May 31 23:37:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780956.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3jsu_A Dihydrofolate reductase 100.0 0 0 771.8 22.2 263 2-264 326-608 (608) 2 3hj3_A Chain A, crystal struct 100.0 0 0 764.1 23.7 263 2-264 238-521 (521) 3 1f28_A Thymidylate synthase; b 100.0 0 0 749.4 22.0 263 2-264 7-297 (297) 4 1hw4_A TS, thymidylate synthas 100.0 0 0 744.6 22.5 263 2-264 73-355 (355) 5 3ix6_A TS, tsase, thymidylate 100.0 0 0 745.7 21.4 264 1-264 97-360 (360) 6 1j3k_C Bifunctional dihydrofol 100.0 0 0 741.5 23.0 263 2-264 46-328 (328) 7 2g8o_A TS, tsase, thymidylate 100.0 0 0 741.2 22.4 264 1-264 1-264 (264) 8 3ik0_A TS, tsase, thymidylate 100.0 0 0 742.3 20.9 263 2-264 4-316 (316) 9 2aaz_A TS, tsase, thymidylate 100.0 0 0 739.9 22.0 263 2-264 21-317 (317) 10 3nrr_A Dihydrofolate reductase 100.0 0 0 733.6 23.4 263 2-264 233-515 (515) 11 3kgb_A Thymidylate synthase 1/ 100.0 0 0 734.0 19.0 264 1-264 9-294 (294) 12 3ed7_A Tsase, TS, thymidylate 100.0 0 0 730.6 20.6 263 2-264 13-295 (295) 13 3irm_A Bifunctional dihydrofol 100.0 0 0 728.5 21.7 263 2-264 238-521 (521) 14 1bkp_A Thymidylate synthase A; 100.0 0 0 698.8 21.6 262 2-264 5-278 (278) 15 1tis_A Thymidylate synthase; t 100.0 0 0 703.5 14.3 259 1-264 1-286 (286) 16 1b5e_A Protein (deoxycytidylat 100.0 0 0 522.1 13.3 214 1-224 8-233 (246) 17 1kwa_A Hcask/LIN-2 protein; PD 51.1 12 0.00053 17.1 3.5 49 188-237 37-86 (88) 18 2q3g_A PDZ and LIM domain prot 44.3 16 0.00068 16.4 3.2 48 189-237 40-87 (89) 19 2d92_A INAD-like protein; PDZ 35.2 22 0.00095 15.5 3.4 48 188-235 56-104 (108) 20 1zd0_A Hypothetical protein PF 33.9 15 0.00063 16.6 1.7 31 48-78 67-98 (150) 21 2pkt_A PDZ and LIM domain prot 32.6 25 0.001 15.3 3.2 46 188-234 39-84 (91) 22 2zpm_A Regulator of sigma E pr 32.1 25 0.0011 15.2 3.2 48 188-237 16-63 (91) 23 1x5q_A LAP4 protein; PDZ domai 31.8 26 0.0011 15.2 3.3 47 188-235 58-104 (110) 24 2jil_A GRIP1 protein, glutamat 29.3 28 0.0012 14.9 3.0 47 188-235 44-91 (97) 25 3enp_A TP53RK-binding protein; 28.0 24 0.001 15.3 1.9 30 49-78 71-101 (177) 26 2jxo_A Ezrin-radixin-moesin-bi 27.9 15 0.00061 16.7 0.8 44 189-233 46-89 (98) 27 2jik_A Synaptojanin-2 binding 27.8 30 0.0013 14.8 3.3 48 188-236 49-97 (101) 28 2w4f_A Protein LAP4; structura 26.3 32 0.0013 14.6 3.8 47 189-236 47-93 (97) 29 2koj_A Partitioning defective 24.6 34 0.0014 14.4 4.1 49 188-236 51-101 (111) 30 2qt5_A Glutamate receptor-inte 24.1 35 0.0015 14.4 2.6 50 188-238 147-197 (200) 31 2yuy_A RHO GTPase activating p 24.1 35 0.0015 14.3 3.2 47 188-235 73-119 (126) 32 1vae_A Rhophilin 2, rhophilin, 23.8 36 0.0015 14.3 2.5 46 188-233 48-93 (111) 33 1a87_A Colicin N; bacteriocin, 23.8 24 0.001 15.4 1.3 46 89-142 162-213 (321) 34 2ego_A General receptor for ph 23.4 36 0.0015 14.3 2.5 38 189-226 50-87 (96) 35 2d90_A PDZ domain containing p 23.3 36 0.0015 14.3 2.4 44 189-233 43-86 (102) 36 1ujd_A KIAA0559 protein; PDZ d 22.8 37 0.0016 14.2 4.5 48 188-236 61-109 (117) 37 3kzd_A TIAM-1, T-lymphoma inva 22.8 37 0.0016 14.2 3.3 36 188-223 47-82 (94) 38 1col_A Colicin A; antibacteria 22.3 29 0.0012 14.8 1.5 37 106-142 53-95 (204) 39 1m5z_A GRIP, AMPA receptor int 21.9 39 0.0016 14.1 3.3 45 188-233 44-88 (91) 40 2eeg_A PDZ and LIM domain prot 21.5 40 0.0017 14.0 4.0 46 189-235 45-90 (94) 41 2qkv_A Inactivation-NO-after-p 21.0 41 0.0017 14.0 3.2 46 188-234 43-89 (96) 42 1u39_A Amyloid beta A4 precurs 20.8 41 0.0017 14.0 2.8 44 189-233 35-78 (80) 43 2i88_A Colicin-E1; protein-mem 20.8 17 0.0007 16.3 -0.1 33 110-142 56-94 (191) 44 2k8y_A Uncharacterized protein 20.7 35 0.0015 14.3 1.6 32 47-78 50-82 (150) 45 2vsv_A Rhophilin-2; scaffold p 20.1 42 0.0018 13.9 4.0 46 188-233 56-101 (109) No 1 >3jsu_A Dihydrofolate reductase-thymidylate synthase; rossmann fold, oxidoreductase, transferase; HET: KA5 NDP UMP; 2.70A {Plasmodium falciparum} Probab=100.00 E-value=0 Score=771.83 Aligned_cols=263 Identities=47% Similarity=0.895 Sum_probs=257.2 Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH Q ss_conf 57999999998639260379985347776120464423698104642022688999999985366646888640032135 Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD 81 (264) Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd 81 (264) +|||+||++||++|+.++||||++|+|+||++|||||++|||||||||||||++++||||||+|+||+++|+++|||||| T Consensus 326 ~qYl~ll~~il~~G~~~~dRTG~gT~s~FG~~~rfdl~~gfPlLTTKkv~~k~vi~ELLWfL~G~tn~~~L~~~~v~IWd 405 (608) T 3jsu_A 326 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWE 405 (608) T ss_dssp HHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEETTTCCCCCSSSCCCCHHHHHHHHHHHTTCCBHHHHHTTTCCTTG T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHCCEEECC T ss_conf 99999999999849876798989868861660464324587612314000899999999998589757889744603366 Q ss_pred HHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC Q ss_conf 65421------------0013876620100036--------775326889999999998088523677751698883202 Q gi|254780956|r 82 EWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM 141 (264) Q Consensus 82 ~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~ 141 (264) +|+++ +|++||+||+|||+|+ +|.++++|||++||++||+||+|||+|+++|||+++++| T Consensus 406 ~n~~~e~ld~~~~~~~~~gdlGpvYG~QWR~fga~y~~~~~~~~~~~~DQl~~vI~~Lk~nP~sRR~iis~WNp~dl~~m 485 (608) T 3jsu_A 406 ANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQM 485 (608) T ss_dssp GGSSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGGGS T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCC T ss_conf 55553045422644434676475332110037974567667877750088999999974096778266533476670667 Q ss_pred CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC Q ss_conf 42113540246676880599997262440222021679999999999976224211113522730210036899999833 Q gi|254780956|r 142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221 (264) Q Consensus 142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~ 221 (264) ||||||+.+||+|++|+|+|++||||+|+|||+|||||+||+|++|||++||++||+|+|++||+|||+||+|+|++||+ T Consensus 486 aLpPCh~~~QF~V~~g~L~~~~~QRS~D~~LG~PfNiasyalL~~miA~~~gl~~G~~~h~igd~HIY~nH~~~v~~ql~ 565 (608) T 3jsu_A 486 ALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN 565 (608) T ss_dssp SSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHTT T ss_pred CCCCCCEEEEEEEECCEEEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHHC T ss_conf 78886068999980998999997131012125627999999999999998598166599980455860868999999857 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 6987687799648868711262033799768768887875569 Q gi|254780956|r 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) |+|+++|+|+|++++++|+||+++||+|+||+|||+||||||- T Consensus 566 R~P~~~P~L~in~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~maa 608 (608) T 3jsu_A 566 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMAA 608 (608) T ss_dssp SCCCCCCEEEECTTCCSTTSCCGGGEEEECCCCCCCCCSCC-- T ss_pred CCCCCCCEEEECCCCCCHHCCCHHHEEEECCCCCCCCCCCCCC T ss_conf 8998998579799988640188659799688789987866569 No 2 >3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A* Probab=100.00 E-value=0 Score=764.11 Aligned_cols=263 Identities=48% Similarity=0.889 Sum_probs=257.0 Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH Q ss_conf 57999999998639260379985347776120464423698104642022688999999985366646888640032135 Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD 81 (264) Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd 81 (264) .|||+|+++||++|+.++||||++|+|+||++|||||++|||||||||+|||++++||||||||+||++.|+++|+|||| T Consensus 238 ~qYl~l~~~Il~~G~~~~dRtG~~t~s~Fg~~~rfdl~~gfPlLTtKkv~~k~v~~ELlWfl~G~tn~~~L~~~~v~IWd 317 (521) T 3hj3_A 238 FQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYIWS 317 (521) T ss_dssp HHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEECSSSCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCTTS T ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHCCCEECC T ss_conf 99999999999758866899998789993546898466788615535522889999999998588517778752655786 Q ss_pred HHHH------------HHCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC Q ss_conf 6542------------10013876620100036--------775326889999999998088523677751698883202 Q gi|254780956|r 82 EWAD------------KDGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM 141 (264) Q Consensus 82 ~~a~------------~~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~ 141 (264) +|++ ++|++||+||+|||+|. +|.|+++|||++||++||+||+|||+|+++|||+++++| T Consensus 318 ~n~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~~~~y~~~~~~y~~~~~DQl~~vI~~lk~nP~sRR~ii~~wnp~dl~~m 397 (521) T 3hj3_A 318 GNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQM 397 (521) T ss_dssp GGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHSTTSSCCEEECCCTTTGGGS T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHEEEEECCHHHHCCC T ss_conf 67655468753677311477687545355405776666556667865779999999985198422247652366675266 Q ss_pred CCCCCCCCEEEEECC-CEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHH Q ss_conf 421135402466768-8059999726244022202167999999999997622421111352273021003689999983 Q gi|254780956|r 142 ALPPCHCLFQFYVDN-GKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL 220 (264) Q Consensus 142 ~lpPC~~~~qf~v~~-g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql 220 (264) ||||||+.+||+|++ |+|+|++||||+|++||+|||||+||+|++|||++||++||+|+|++||+|||+||+|++++|| T Consensus 398 aLpPCh~~~qf~v~~~~~L~~~~~qRS~D~~LG~pfNiasyalL~~miA~~~gl~~G~~~h~~gd~HIY~nH~~~~~~ql 477 (521) T 3hj3_A 398 ALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQL 477 (521) T ss_dssp SSCCSEEEEEEEECTTSEEEEEEEESCCBTTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHT T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHH T ss_conf 89989663799963898089999810230103675789999999999999849936659999467787087899999985 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 36987687799648868711262033799768768887875569 Q gi|254780956|r 221 SRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 221 ~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) +|+|+++|+|+|++++++|+||+++||+|+||+|||+||||||| T Consensus 478 ~r~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~aV 521 (521) T 3hj3_A 478 SRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521 (521) T ss_dssp TSCCCCCCEEEESSCCSSGGGCCGGGEEEESCCCCCCCCCCCCC T ss_pred CCCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC T ss_conf 78998998679689988531498649799798678887756519 No 3 >1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A* Probab=100.00 E-value=0 Score=749.36 Aligned_cols=263 Identities=50% Similarity=0.947 Sum_probs=255.8 Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEE-CEEEEECC-CCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH Q ss_conf 579999999986392603799853477761-20464423-6981046420226889999999853666468886400321 Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFG-YQMRFDLS-KGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSI 79 (264) Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg-~~~~~dl~-~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~i 79 (264) +||++|+++||++|+.++||||++|+|+|| .+|||||+ +|||||||||||||++++||||||+|+||+++|+++|||| T Consensus 7 ~qYl~l~~~IL~~G~~~~dRtG~gt~s~Fg~~~~rfdL~~~gFPlLTTKkv~~k~vi~ELlWfl~G~tn~~~L~~~~v~i 86 (297) T 1f28_A 7 QQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETDSLKLREKNIHI 86 (297) T ss_dssp HHHHHHHHHHHHHCEEEECTTSSEEEEEESCCCEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTTCCT T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC T ss_conf 99999999999839886887898459872373158855789854255230349999999999981797478887512010 Q ss_pred HHHHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHH Q ss_conf 3565421------------0013876620100036--------7753268899999999980885236777516988832 Q gi|254780956|r 80 WDEWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALID 139 (264) Q Consensus 80 Wd~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~ 139 (264) ||+|+++ +|++||+||+|||+|+ +|.++++|||++||++||+||+|||+|+++|||++++ T Consensus 87 Wd~~~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~g~~y~~~~~~~~~~~~DQl~~vi~~Lk~nP~sRR~iis~Wnp~~l~ 166 (297) T 1f28_A 87 WDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLE 166 (297) T ss_dssp THHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGG T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHC T ss_conf 00001134454327765657875520115777438765455457888663399999998622987645899727877835 Q ss_pred HCCCCCCCCCEEEEEC------CCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHH Q ss_conf 0242113540246676------8805999972624402220216799999999999762242111135227302100368 Q gi|254780956|r 140 KMALPPCHCLFQFYVD------NGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHF 213 (264) Q Consensus 140 ~~~lpPC~~~~qf~v~------~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~ 213 (264) +|||||||+.+||+|+ +|+|+|++||||+|+|||+|||||+|++|++|||++||++||+|+|++||+|||+||+ T Consensus 167 ~~aLpPCh~~~qf~V~~~~~~~~~~L~~~~~QRS~D~~LG~PfNiasyalL~~~iA~~~gl~~G~~~~~~gd~HIY~nH~ 246 (297) T 1f28_A 167 KMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHI 246 (297) T ss_dssp GSSSCCSEEEEEEEECCCSTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEHHHH T ss_pred CCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECEEEEHHHHH T ss_conf 37888762368999955777877638899996248865330244999999999999970887756999812246438689 Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 999998336987687799648868711262033799768768887875569 Q gi|254780956|r 214 EQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 214 ~~vk~ql~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) |++++||+|+|+++|+|+|++++++|+||++|||+|+||+|||+||||||| T Consensus 247 e~v~eql~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~aV 297 (297) T 1f28_A 247 EALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297 (297) T ss_dssp HHHHTGGGSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCCCCC T ss_pred HHHHHHHCCCCCCCCEEEECCCCCCHHCCCEEEEEEECCCCCCCCCCCCCC T ss_conf 999998568999999888589988550397024799796688887757629 No 4 >1hw4_A TS, thymidylate synthase; methyltransferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 Probab=100.00 E-value=0 Score=744.64 Aligned_cols=263 Identities=49% Similarity=0.961 Sum_probs=257.9 Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH Q ss_conf 57999999998639260379985347776120464423698104642022688999999985366646888640032135 Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD 81 (264) Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd 81 (264) +|||+|+++||++|+.++||||++|+|+||++|||||++|||||||||||||++++||||||||+||+++|+++|++||| T Consensus 73 ~qYl~ll~~IL~~G~~~~dRTG~gT~SvFG~~~rfdL~~gFPlLTTKkv~~K~ii~ELLWfLsGstni~~L~e~~v~IWd 152 (355) T 1hw4_A 73 LQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWD 152 (355) T ss_dssp HHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTTC---- T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC T ss_conf 99999999999869856898998558861446897367798503433214788999999999679738888744551205 Q ss_pred HHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC Q ss_conf 65421------------0013876620100036--------775326889999999998088523677751698883202 Q gi|254780956|r 82 EWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM 141 (264) Q Consensus 82 ~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~ 141 (264) +|+++ +|++||+||+|||+|+ +|.++++|||++||++||+||+|||+|+++|||+++++| T Consensus 153 ~n~~~~~~d~~~~~~~e~GdlGpiYG~QwR~~g~~y~~~~~~y~g~giDQl~~vI~~Lk~nP~SRR~iis~Wnp~dl~~~ 232 (355) T 1hw4_A 153 ANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLM 232 (355) T ss_dssp ------------------CBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGGGTTTS T ss_pred CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCC T ss_conf 61024466640432323686653035677643777655544467875889999999876489835045311788897346 Q ss_pred CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC Q ss_conf 42113540246676880599997262440222021679999999999976224211113522730210036899999833 Q gi|254780956|r 142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221 (264) Q Consensus 142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~ 221 (264) +|||||+.+||+|++|+|+|++||||||+|||+||||++|++|++|||++||++||+|+|++||+|||+||+|++++||+ T Consensus 233 ~lpPCh~~~qF~v~~gkL~l~v~qRS~D~~LG~PfNi~syalL~~miA~~~gl~~G~~~h~~gd~HIY~nHie~vkeqL~ 312 (355) T 1hw4_A 233 ALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQ 312 (355) T ss_dssp SSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHTT T ss_pred CCCCCCEEEEEEECCCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHC T ss_conf 78643078999973786358899603114432132199999999999998477566599995665762867999999957 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 6987687799648868711262033799768768887875569 Q gi|254780956|r 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) |+|+++|+|+|++++++|+||++|||+|+||+|||+||||||| T Consensus 313 R~P~~~P~L~in~~~~~i~d~~~~Df~L~~Y~~hp~Ik~~mAV 355 (355) T 1hw4_A 313 REPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 355 (355) T ss_dssp SCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCC--- T ss_pred CCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC T ss_conf 8998998558589988412588638799798789888867619 No 5 >3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious disease, brucellosis, orchitis, epididymitis; 2.20A {Brucella melitensis} Probab=100.00 E-value=0 Score=745.74 Aligned_cols=264 Identities=67% Similarity=1.245 Sum_probs=262.5 Q ss_pred CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH Q ss_conf 95799999999863926037998534777612046442369810464202268899999998536664688864003213 Q gi|254780956|r 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIW 80 (264) Q Consensus 1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW 80 (264) |+||++|+++||++|+.++||||++|+|+||+++||||++|||||||||+|||++++|++|||||+||+++|.+++++|| T Consensus 97 ~~qYl~ll~~Il~~G~~~~~RtG~~t~s~fg~~~~~dl~~gfPllTtKk~~~k~~i~ElLWfLsG~tn~~~l~~~~~~iW 176 (360) T 3ix6_A 97 MRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEGFPVLTTKKLHLRSIIHELLWFLKGDTNIAYLKENGVTIW 176 (360) T ss_dssp CHHHHHHHHHHHHHCEEECC----CEEEEEEEEEEEEGGGCCCCC---CCCHHHHHHHHHHHHHCCCBTHHHHHTTCCTT T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC T ss_conf 06899999999984977789898745886255378334569865673215589999999999829985556875498621 Q ss_pred HHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCEEE Q ss_conf 56542100138766201000367753268899999999980885236777516988832024211354024667688059 Q gi|254780956|r 81 DEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLS 160 (264) Q Consensus 81 d~~a~~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~~qf~v~~g~L~ 160 (264) ++|++++|++||+||+|||+|+.+.++++||+++||++||+||+|||+|+++|||.++++|+|||||+.+||+|++|+|+ T Consensus 177 ~~~a~~~g~lG~~YG~qwR~~~~~~~~~~DQl~~vI~~Lk~nP~sRR~ii~~Wnp~~l~~~~lpPCh~~~qF~V~~g~L~ 256 (360) T 3ix6_A 177 DEWADENGDLGPVYGYQWRSWPAPDGRHIDQIANLLKMLHTNPQSRRLIVSAWNPALVDEMALPPCHCLFQFYVANGRLS 256 (360) T ss_dssp GGGCCTTSBCSSCHHHHHHHEECTTSCEECHHHHHHHHHHHCTTCSCCEEECCCHHHHTTCSSCCSEEEEEEEEETTEEE T ss_pred HHHCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCCCCCEEEEEEEECCEEE T ss_conf 43247788437302435503778897276899999998622985500688833777863779998755899999889379 Q ss_pred EEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC Q ss_conf 99972624402220216799999999999762242111135227302100368999998336987687799648868711 Q gi|254780956|r 161 CQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL 240 (264) Q Consensus 161 ~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~i~ 240 (264) |++||||||++||+||||++|++|++|||+.||++||+|+|++||+|||+||+++|++||+|+|+++|+|+|++++++|+ T Consensus 257 l~~~qRS~D~~lG~PfNi~syslL~~~iA~~~gl~~G~~~h~~gd~HIY~nH~e~vk~qL~R~p~~~P~l~i~~~~~~i~ 336 (360) T 3ix6_A 257 CQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPDVKDLF 336 (360) T ss_dssp EEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECTTCCSGG T ss_pred EEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC T ss_conf 99954445642025358999999999999854981437999977678727679999998577998998568589988512 Q ss_pred CCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 262033799768768887875569 Q gi|254780956|r 241 SFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 241 d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) ||++|||+|+||+|||+||||||| T Consensus 337 d~~~~Df~l~~Y~~hp~Ik~~~aV 360 (360) T 3ix6_A 337 AFRFEDFRLDGYEADPTIKAPIAV 360 (360) T ss_dssp GCCGGGEEEEC------------- T ss_pred CCCHHHEEEECCCCCCCCCCCCCC T ss_conf 488238799798689987746639 No 6 >1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C* Probab=100.00 E-value=0 Score=741.50 Aligned_cols=263 Identities=47% Similarity=0.902 Sum_probs=257.6 Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH Q ss_conf 57999999998639260379985347776120464423698104642022688999999985366646888640032135 Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD 81 (264) Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd 81 (264) +||++||++||++|+.++||||++|+|+||++|||||++|||||||||+|||++++||||||+|+||+++|+++||+||| T Consensus 46 ~qYl~l~~~Il~~G~~~~dRTG~gt~s~Fg~~~rfdl~~gFPlLTTKk~~~k~ii~ELLWfL~G~tn~~~L~~~gv~iWd 125 (328) T 1j3k_C 46 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWE 125 (328) T ss_dssp HHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCCHHHHHHHHHHHTTCCBHHHHHTTTCCTTS T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC T ss_conf 99999999999809866788999768851552797356698536750245899999999998489657889867964151 Q ss_pred HHHHHH------------CCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC Q ss_conf 654210------------013876620100036--------775326889999999998088523677751698883202 Q gi|254780956|r 82 EWADKD------------GELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM 141 (264) Q Consensus 82 ~~a~~~------------g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~ 141 (264) +|++++ |++||+||+|||+|+ ++.++++|||++||++||+||+|||+|+++|||.++++| T Consensus 126 ~~~~~e~~~~~~~~~~~~gdlG~~YG~qwr~~g~~~~~~~~~~~~~g~DQl~~vI~~Lk~nP~sRR~iis~Wnp~~l~~~ 205 (328) T 1j3k_C 126 ANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQM 205 (328) T ss_dssp GGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGGGGGGS T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCC T ss_conf 20204454302223334587775465113306753456666788866219999999974097510034331477770046 Q ss_pred CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC Q ss_conf 42113540246676880599997262440222021679999999999976224211113522730210036899999833 Q gi|254780956|r 142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221 (264) Q Consensus 142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~ 221 (264) +|||||+.+||+|++|+|+|++||||||++||+||||++||+|++|||+.||++||+|+|++||+|||+||+|++++||+ T Consensus 206 ~lpPCh~~~qF~v~~g~L~~~~~qRS~D~~lG~pfNi~~yalL~~~iA~~~gl~~G~~~h~~gd~HIY~nH~e~vk~qL~ 285 (328) T 1j3k_C 206 ALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN 285 (328) T ss_dssp SSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHTT T ss_pred CCCCCEEEEEEEEECCEEEEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHC T ss_conf 66331478999997898999998400010015543099999999999997297446899998887871857999999966 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 6987687799648868711262033799768768887875569 Q gi|254780956|r 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) |+|+++|+|+|++++++|+|++++||+|+||+|||+||||||- T Consensus 286 R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~maa 328 (328) T 1j3k_C 286 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMAA 328 (328) T ss_dssp SCCCCCCEEEECTTCCSGGGCCGGGEEEECCCCCCCCCCCSCC T ss_pred CCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC T ss_conf 8999999679789988630198117799798899977757459 No 7 >2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternary complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ... Probab=100.00 E-value=0 Score=741.25 Aligned_cols=264 Identities=58% Similarity=1.110 Sum_probs=262.7 Q ss_pred CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH Q ss_conf 95799999999863926037998534777612046442369810464202268899999998536664688864003213 Q gi|254780956|r 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIW 80 (264) Q Consensus 1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW 80 (264) ||||++|+++||++|+.++||||++|+|+||++++||+++|||+|||||++||++++|++|||||+||+++|+++|++|| T Consensus 1 m~qYl~l~~~Il~~G~~~~drtG~~t~sifg~~~~~dl~~gfPllTtKk~~~k~~~~EllWfl~G~tn~~~l~~~~~~iW 80 (264) T 2g8o_A 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIW 80 (264) T ss_dssp CHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHHTTCCTT T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCC T ss_conf 95899999999982987328999738999065578763238872464033344437888999816845554443034413 Q ss_pred HHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCEEE Q ss_conf 56542100138766201000367753268899999999980885236777516988832024211354024667688059 Q gi|254780956|r 81 DEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLS 160 (264) Q Consensus 81 d~~a~~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~~qf~v~~g~L~ 160 (264) ++|++++|++|++||+|||+|+.++|+++||+++||++||+||+|||+|+++|||.++++|+|||||..+||+|++|+|+ T Consensus 81 ~~~~~~~G~~G~~YG~q~r~~~~~~~~~~DQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~~~l~PC~~~~qf~v~~g~L~ 160 (264) T 2g8o_A 81 DEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160 (264) T ss_dssp GGGCCTTSBCCSCHHHHHHHEEETTTEEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTEEE T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCCCCCCCCEEEEEEEECCCEE T ss_conf 23341133265542100033437999852589999999865977503899942455664467676617899999489408 Q ss_pred EEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC Q ss_conf 99972624402220216799999999999762242111135227302100368999998336987687799648868711 Q gi|254780956|r 161 CQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL 240 (264) Q Consensus 161 ~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~i~ 240 (264) |++||||||++||+|||||+|++|++|||+.||++||+|+|++||+|||+||+|++++||+|+|+++|+|+|++++++|+ T Consensus 161 ~~~~qRS~D~~lG~pfNi~~~~~L~~~iA~~~gl~~G~~~~~~gd~HIY~~h~~~v~~ql~r~p~~~P~l~i~~~~~~i~ 240 (264) T 2g8o_A 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240 (264) T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECCCCSSTT T ss_pred EEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC T ss_conf 99983211210256534999999999999987075645898503058646468999998377999998779689978503 Q ss_pred CCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 262033799768768887875569 Q gi|254780956|r 241 SFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 241 d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) |+++|||+|+||+|||+||||||| T Consensus 241 d~~~~Df~l~~Y~~~p~ik~~maV 264 (264) T 2g8o_A 241 DYRFEDFEIEGYDPHPGIKAPVAI 264 (264) T ss_dssp CCCGGGEEEESCCCCCCCCCCCCC T ss_pred CCCHHHEEEECCCCCCCCCCCCCC T ss_conf 688468799798789987746729 No 8 >3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase, methyltransferase, nucleot biosynthesis; HET: 7C1 UMP; 2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 1tdb_A* 1tda_A* ... Probab=100.00 E-value=0 Score=742.28 Aligned_cols=263 Identities=55% Similarity=0.994 Sum_probs=259.7 Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH Q ss_conf 57999999998639260379985347776120464423698104642022688999999985366646888640032135 Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD 81 (264) Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd 81 (264) +|||+||++||++|+.++||||++|+|+||.++||||++|||||||||+|||++++||+|||+|+||++.|+++|||||| T Consensus 4 ~qYl~l~~~Il~~G~~~~dRTg~~T~s~fG~~~r~dl~~gfPlLTTKkv~~k~vi~ELlWfl~G~tn~~~L~~~gv~IWd 83 (316) T 3ik0_A 4 QPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFLHGDTNIRFLLQHRNHIWD 83 (316) T ss_dssp HHHHHHHHHHHHHCEEEEETTTEEEEEEESCEEEEEGGGCCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTTCCTTH T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC T ss_conf 99999999999829886788988669982124798333598646642043888999999998189447899974997657 Q ss_pred HHHHHH--------------------------------------------------CCCCCCCCCHHHCCCCCCCCHHHH Q ss_conf 654210--------------------------------------------------013876620100036775326889 Q gi|254780956|r 82 EWADKD--------------------------------------------------GELGPIYGVQWRSWPDYDGNVIDQ 111 (264) Q Consensus 82 ~~a~~~--------------------------------------------------g~lg~~YG~qwR~~~~~~~~~~DQ 111 (264) +||+++ |++|++||+|||+|..+.++++|| T Consensus 84 ~~a~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GdlG~~YG~qwR~~~~~~~~~~DQ 163 (316) T 3ik0_A 84 EWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQ 163 (316) T ss_dssp HHHHHHHTTSSSCCSSCCTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHTBCSSSHHHHHHCEECTTSCEECH T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEECCCCCCCHHHH T ss_conf 52366544211114765577761204462102001567877766422344322356766665531212202578748789 Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 99999999808852367775169888320242113540246676880599997262440222021679999999999976 Q gi|254780956|r 112 ISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASV 191 (264) Q Consensus 112 l~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~ 191 (264) +++||++||+||+|||+|+++|||.++++|+|||||+.+||+|++|+|+|+++|||||++||+||||++|++|++|||+. T Consensus 164 l~~vI~~Lk~~P~sRR~i~s~Wnp~d~~~~~l~PC~~~~qf~v~~g~L~l~~~qRS~D~~lG~pfNi~~y~~L~~~iA~~ 243 (316) T 3ik0_A 164 LGDVIEQIKTHPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHE 243 (316) T ss_dssp HHHHHHHHHHCTTCSCCEEECCCTTTTTTSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHEEEECCCHHHHCCCCCCCCCCEEEEEEECCEEEEEEEEECCCHHHHCCHHHHHHHHHHHHHHHH T ss_conf 99999985259864220554068889607887546744899984891799999625223321368999999999999986 Q ss_pred HCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 2242111135227302100368999998336987687799648868711262033799768768887875569 Q gi|254780956|r 192 IGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 192 ~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) ||++||+|+|++||+|||+||+|++++||+|+|+++|+|+|++++++|+||++|||+|+||+|||+||||||| T Consensus 244 ~gl~~G~~~~~~gd~HIY~~h~~~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~AV 316 (316) T 3ik0_A 244 CGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316 (316) T ss_dssp HTCEEEEEEEEEEEEEEETTSHHHHHHHTTSCCCCCCEEEECTTCCCGGGCCGGGEEEECCCCCCCCCC---- T ss_pred CCCCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC T ss_conf 0983044899610358627479999998477999998579799988502498347799798688887747649 No 9 >2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans} Probab=100.00 E-value=0 Score=739.88 Aligned_cols=263 Identities=46% Similarity=0.850 Sum_probs=253.8 Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEE-CEEEEECCCC-CCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH Q ss_conf 579999999986392603799853477761-2046442369-81046420226889999999853666468886400321 Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFG-YQMRFDLSKG-FPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSI 79 (264) Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg-~~~~~dl~~g-fPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~i 79 (264) .|||+|+++||++|+.++||||++|+|+|| .+|||||++| ||||||||||||++++||||||+|+||++.|+++||+| T Consensus 21 ~QYl~ll~~Il~~G~~~~dRTG~gt~svfg~~~~rfdl~~g~fPlLTTKkv~~k~ii~ELLWfl~G~tn~~~L~~~gv~I 100 (317) T 2aaz_A 21 YQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAELLWFVSGCTDAKMLSSQGVGI 100 (317) T ss_dssp HHHHHHHHHHHHHCEEECCTTSSCEEEEESCCCEEEECCTTBCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHTTTCCT T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC T ss_conf 99999999999829876887898668773463178866789743455221558989999999997287688897547873 Q ss_pred HHHHHHHH------------CCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHH Q ss_conf 35654210------------013876620100036--------7753268899999999980885236777516988832 Q gi|254780956|r 80 WDEWADKD------------GELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALID 139 (264) Q Consensus 80 Wd~~a~~~------------g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~ 139 (264) ||+|++++ |++||+||+|||+|+ +|.++++|||++||++||+||+|||+|+++|||++++ T Consensus 101 Wd~~~~~~~~~~~~~~~~~~gdlGpiYG~QwR~~g~~y~~~~~~~~~~~~DQl~~vI~~Lk~nP~sRR~iis~Wnp~dl~ 180 (317) T 2aaz_A 101 WDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLP 180 (317) T ss_dssp THHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGG T ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCC T ss_conf 21456513566458875446865632243877269532057676478653799999986402987403798716777736 Q ss_pred HCCCCCCCCCEEEEEC---------CCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEH Q ss_conf 0242113540246676---------8805999972624402220216799999999999762242111135227302100 Q gi|254780956|r 140 KMALPPCHCLFQFYVD---------NGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYN 210 (264) Q Consensus 140 ~~~lpPC~~~~qf~v~---------~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~ 210 (264) +|+|||||+.+||+|+ +|+|+|++||||+|++||+||||++|++|++|||++||++||+|+|++||+|||+ T Consensus 181 ~m~lpPCh~~~QF~V~~~~~~~~~~~~~L~~~~~qRS~D~~LG~PfNiasyalL~~miA~~~gl~~G~~~~~~gd~HIY~ 260 (317) T 2aaz_A 181 LMALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDAHVYR 260 (317) T ss_dssp GSSSCCSEEEEEEEEECCCTTCTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEG T ss_pred CCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEH T ss_conf 47898875048998844654555779869999951003454430112999999999999985475663899735668608 Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCC---CCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 3689999983369876877996488---68711262033799768768887875569 Q gi|254780956|r 211 NHFEQADLQLSRSPRTLPQMIINPN---IVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 211 nH~~~vk~ql~R~p~~~P~L~i~~~---~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) ||+|+|++||+|+|+++|+|+|+++ +++|++|++|||+|+||+|||+||||||- T Consensus 261 nHie~vkeqL~R~P~~~P~l~i~~~~~~i~di~~~~~~Df~l~~Y~~hp~Ik~~maa 317 (317) T 2aaz_A 261 DHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMSA 317 (317) T ss_dssp GGHHHHHHHHTSCCCCCCEEEESSCHHHHCSTTCCCGGGEEEECCCCCCCCCCCCCC T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCHHEEEECCCCCCCCCCCCCC T ss_conf 689999998578999999688238888633121597027799798889977856569 No 10 >3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A* Probab=100.00 E-value=0 Score=733.57 Aligned_cols=263 Identities=48% Similarity=0.918 Sum_probs=257.4 Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH Q ss_conf 57999999998639260379985347776120464423698104642022688999999985366646888640032135 Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD 81 (264) Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd 81 (264) .|||+|+++||++|+.++||||++|+|+||++|||||++|||||||||||||++++||||||||+||++.|.++++|||| T Consensus 233 ~qYl~l~~~Il~~G~~~~~RtG~~t~s~fg~~~r~dl~~gfPlLTtKk~~~k~i~~ELlWflsG~tn~~~L~~~~v~IWd 312 (515) T 3nrr_A 233 FQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLWFIKGSTNGNDLLAKNVRIWE 312 (515) T ss_dssp HHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTTTCCTTH T ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCEECC T ss_conf 99999999999726803589997069964705787545687640025321888999999998389627889855754267 Q ss_pred HHHHHH------------CCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC Q ss_conf 654210------------013876620100036--------775326889999999998088523677751698883202 Q gi|254780956|r 82 EWADKD------------GELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM 141 (264) Q Consensus 82 ~~a~~~------------g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~ 141 (264) +|++++ |++|++||+|||+|+ +|.++++|||++||++||+||+|||+|+++|||+++++| T Consensus 313 ~~~~~~~~~~~g~~~~~~gdlG~iYG~qwr~~g~~~~~~~~~~~~~~~DQl~~vi~~Lk~nP~sRR~ii~~wnp~~~~~~ 392 (515) T 3nrr_A 313 LNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKM 392 (515) T ss_dssp HHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGGGGGGS T ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHCC T ss_conf 76551347633754234464676341055424863556632578876668999999986597212321232668887277 Q ss_pred CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC Q ss_conf 42113540246676880599997262440222021679999999999976224211113522730210036899999833 Q gi|254780956|r 142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221 (264) Q Consensus 142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~ 221 (264) +|||||..+||+|++|+|+|++||||+|++||+|||||+|++|++|||++||++||+|+|++||+|||+||+|++++||+ T Consensus 393 ~l~PC~~~~qf~v~~~~L~~~~~qRS~D~~lG~pfNi~~yalL~~~iA~~~gl~~G~~~~~~gd~HIY~~h~~~v~~ql~ 472 (515) T 3nrr_A 393 ALPPCHCFFQFYVSDNKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIA 472 (515) T ss_dssp SSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHT T ss_pred CCCCCCEEEEEEEECCEEEEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHHC T ss_conf 88522158999995778899999520122125757899999999999998498054699994678970868999999867 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 6987687799648868711262033799768768887875569 Q gi|254780956|r 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) |+|+++|+|+|++++++|+||++|||+|+||+|||+||||||- T Consensus 473 R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~I~~~~a~ 515 (515) T 3nrr_A 473 RIPHPFPRLRLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMSA 515 (515) T ss_dssp SCCCCCCEEEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCCC T ss_pred CCCCCCCEEEECCCCCCHHCCCHHHEEEECCCCCCCCCCCCCC T ss_conf 7998998369789988540388417799688789985723359 No 11 >3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynthesis, transferase; 2.20A {Encephalitozoon cuniculi gb-m1} Probab=100.00 E-value=0 Score=733.98 Aligned_cols=264 Identities=52% Similarity=0.990 Sum_probs=257.2 Q ss_pred CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCC-CCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH Q ss_conf 95799999999863926037998534777612046442369-81046420226889999999853666468886400321 Q gi|254780956|r 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKG-FPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSI 79 (264) Q Consensus 1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~g-fPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~i 79 (264) |+||++|+++||++|+.++||||++|+|+||+++||||++| ||||||||+|||++++|+||||+|+||+++|+++||+| T Consensus 9 e~qYl~ll~~IL~~G~~~~dRtG~~t~svfg~~~r~dl~~g~fPlLTtKkv~~k~~i~ElLWfl~G~t~~~~L~~~gv~i 88 (294) T 3kgb_A 9 EHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVVEELLFFLRGETDSKVLEKKGVRI 88 (294) T ss_dssp HHHHHHHHHHHHHHCEEEC----CCEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCCTHHHHTTTCC- T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHCCCEE T ss_conf 69999999999974987668999866998244469877889610586414207889999999974897355665148555 Q ss_pred HHHHHHH-----------HCCCCCCCCCHHHCC--------CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHH Q ss_conf 3565421-----------001387662010003--------677532688999999999808852367775169888320 Q gi|254780956|r 80 WDEWADK-----------DGELGPIYGVQWRSW--------PDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDK 140 (264) Q Consensus 80 Wd~~a~~-----------~g~lg~~YG~qwR~~--------~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~ 140 (264) ||+|+++ +|++||+||+|||+| .+++++++|||++||++||+||+|||+|+++|||.++++ T Consensus 89 Wd~~~~~~~~~~~~~~~~~gdlG~~YG~qwr~~~~~y~~~~~~~~~~~~DQl~~vI~~Lk~~P~sRR~i~s~wnp~d~~~ 168 (294) T 3kgb_A 89 WEKNGAKQFLQSVGIDREEGDLGPIYGFQWRHFGARYETSASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPTDLGS 168 (294) T ss_dssp --------------------CCCSCHHHHHHSBTCCCCCTTSCCTTSSBCHHHHHHHHHHHCTTCSCCEEECCCTTCHHH T ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHCC T ss_conf 24435411466425677678454535388875033013455567898764999999987059423414887348999638 Q ss_pred CCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHH Q ss_conf 24211354024667688059999726244022202167999999999997622421111352273021003689999983 Q gi|254780956|r 141 MALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL 220 (264) Q Consensus 141 ~~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql 220 (264) |+|||||+.+||+|++|+|+|++||||||++||+||||++|++|++|||++||++||+|+|++||+|||+||+|++++|| T Consensus 169 ~~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~gd~HIY~nh~~~v~~ql 248 (294) T 3kgb_A 169 MALPPCHVLFQFNVTDGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDSLRQQI 248 (294) T ss_dssp HHSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHT T ss_pred CCCCCCCCEEEEEECCCEEEEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEHHHHHHHHHHH T ss_conf 89999986279965796078878720236554355209999999999999719842058987345574074799999995 Q ss_pred CCCCCCCCEEEECCC--CCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 369876877996488--68711262033799768768887875569 Q gi|254780956|r 221 SRSPRTLPQMIINPN--IVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 221 ~R~p~~~P~L~i~~~--~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) +|+|+++|+|+|+++ .++|++|++|||+|+||+|||+||||||- T Consensus 249 ~R~p~~~P~l~i~~~~~~~~i~~~~~~Df~l~~Y~~hp~Ik~~maa 294 (294) T 3kgb_A 249 QRPPRAFPKLFVSPKGPRTEPEHFQYEDFELVGYDPHPAIKMNMSA 294 (294) T ss_dssp TSCCCCCCEEEECCSSCCCSGGGCCGGGEEEESCCCC--------- T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEEHEEEECCCCCCCCCCCCCC T ss_conf 7899999957978766767504455206799898899977846569 No 12 >3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 1ju6_A* 1juj_A* 3egy_X* 3ehi_X* ... Probab=100.00 E-value=0 Score=730.60 Aligned_cols=263 Identities=49% Similarity=0.954 Sum_probs=257.3 Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH Q ss_conf 57999999998639260379985347776120464423698104642022688999999985366646888640032135 Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD 81 (264) Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd 81 (264) .|||+|+++||++|+.++||||++|+|+||+++||||++|||||||||+|||++++||+|||+|+||+++|+++|++||| T Consensus 13 ~qYl~ll~~Il~~G~~~~dRTG~~T~svfg~~~r~Dl~~gFPlLTTKkv~~K~ii~ELLWfl~G~tn~~~l~~~~~~iWd 92 (295) T 3ed7_A 13 LQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWD 92 (295) T ss_dssp HHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCTTTTCCHHHHHHHHHHHHTTCCBGGGGCC-----CC T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC T ss_conf 99999999999819887898999658980425797566798677743530788999999999858548999750121202 Q ss_pred HHHHH------------HCCCCCCCCCHHHCCCC--------CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC Q ss_conf 65421------------00138766201000367--------75326889999999998088523677751698883202 Q gi|254780956|r 82 EWADK------------DGELGPIYGVQWRSWPD--------YDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM 141 (264) Q Consensus 82 ~~a~~------------~g~lg~~YG~qwR~~~~--------~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~ 141 (264) +|+++ +|++||+||+|||+|+. +.++++||+++||++||+||+|||+|+++|||+++++| T Consensus 93 ~~~~~~~~~~~~~~~~~~gdlG~~YG~qwr~~~~~y~~~~~~~~~~~~DQl~~vI~~Lk~~P~sRR~ii~~wnp~~~~~~ 172 (295) T 3ed7_A 93 ANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLM 172 (295) T ss_dssp SCSSCCGGGGSCHHHHHTTBCCSCTHHHHHHBTCCCCCSSSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGGGTTTS T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHCC T ss_conf 01000025541544434674565554054414642345543578976349999999987598601102331688774102 Q ss_pred CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC Q ss_conf 42113540246676880599997262440222021679999999999976224211113522730210036899999833 Q gi|254780956|r 142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221 (264) Q Consensus 142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~ 221 (264) +|||||+.+||+|++|+|+|+++|||+|++||+||||++|++|++|||++||++||+|+|++||+|||+||+|++++||+ T Consensus 173 ~l~PC~~~~qf~v~~~~L~~~~~qRS~D~~lG~pfNi~~~~lL~~~iA~~~gl~~G~~~~~~~d~HIY~~h~~~v~~ql~ 252 (295) T 3ed7_A 173 ALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQ 252 (295) T ss_dssp SSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHTT T ss_pred CHHHCEEEEEEEECCCCEEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEHHHHHHHHHHHC T ss_conf 11223068999973895479997434212210344299999999999997398533899994124761757999999957 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 6987687799648868711262033799768768887875569 Q gi|254780956|r 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) |+|+++|+|+|++++++|+||+++||+|+||+|||+||||||| T Consensus 253 R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~~p~ik~~mAV 295 (295) T 3ed7_A 253 REPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 295 (295) T ss_dssp SCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCC---- T ss_pred CCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC T ss_conf 8999998568489987312688769799798789988867619 No 13 >3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A* Probab=100.00 E-value=0 Score=728.46 Aligned_cols=263 Identities=49% Similarity=0.916 Sum_probs=257.3 Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCC-CCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH Q ss_conf 5799999999863926037998534777612046442369-810464202268899999998536664688864003213 Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKG-FPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIW 80 (264) Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~g-fPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW 80 (264) +|||+||++||++|+.+.||||++|+|+||++|||||++| ||||||||++||++++||+|||+|+||+++|++.||||| T Consensus 238 ~qYl~l~~~il~~G~~~~~RtG~~t~s~fg~~~r~dl~~g~fPlLTtKk~~~k~i~~ELlWflsG~tni~~L~e~~v~IW 317 (521) T 3irm_A 238 EQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEELLWFLRGETYAKKLSDKGVHIW 317 (521) T ss_dssp HHHHHHHHHHHHHCEEEECTTCCEEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTTTCCTT T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHCCCEEC T ss_conf 99999999999719812589999778970334798668898762452343188899999999858951666752696048 Q ss_pred HHHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHH Q ss_conf 565421------------0013876620100036--------77532688999999999808852367775169888320 Q gi|254780956|r 81 DEWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDK 140 (264) Q Consensus 81 d~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~ 140 (264) |+|+++ +|++||+||+|||+|+ .++++++|||++||++||+||+|||+|+++|||+++++ T Consensus 318 d~n~~~~~~~~~~~~~~~~gdlG~~YG~qwr~~~~~y~~~~~~~~~~~iDQl~~vi~~Lk~~p~sRr~i~~~wnp~~~~~ 397 (521) T 3irm_A 318 DDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTHHDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPR 397 (521) T ss_dssp STTTSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGGG T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCC T ss_conf 88522436765452100134566202655213453104666677886429999999987519974118988425788457 Q ss_pred CCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHH Q ss_conf 24211354024667688059999726244022202167999999999997622421111352273021003689999983 Q gi|254780956|r 141 MALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL 220 (264) Q Consensus 141 ~~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql 220 (264) |+|||||+.+||+|++|+|+|+++|||+|++||+||||++|++|++|||+.||++||+|+|++||+|||+||++++++|| T Consensus 398 ~~l~pC~~~~qf~v~~g~L~~~~~qRS~D~~lG~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~v~~~l 477 (521) T 3irm_A 398 MALPPCHLLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQL 477 (521) T ss_dssp SSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHT T ss_pred CCCCCCCCEEEEEECCCEEEEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHH T ss_conf 88899983699998899899999833000103675769999999999999869805569999577797176799999985 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 36987687799648868711262033799768768887875569 Q gi|254780956|r 221 SRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 221 ~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) +|+|+++|+|+|++++++|+||+++||+|+||+|||+||||||| T Consensus 478 ~R~p~~~P~l~i~~~~~~i~d~~~~D~~l~~Y~~~p~i~~~~av 521 (521) T 3irm_A 478 KRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521 (521) T ss_dssp TSCCCCCCEEEESCCCSBGGGCCGGGEEEESCCCCCCCSCCCC- T ss_pred CCCCCCCCEEEECCCCCCHHCCCHHHEEEECCCCCCCCCCCCCC T ss_conf 78998998479799877440588769799688789987756519 No 14 >1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A* Probab=100.00 E-value=0 Score=698.81 Aligned_cols=262 Identities=40% Similarity=0.735 Sum_probs=254.3 Q ss_pred HHHHHHHHHHHHCCCEE----------CCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCC-HH Q ss_conf 57999999998639260----------37998534777612046442369810464202268899999998536664-68 Q gi|254780956|r 2 HQYLDLLRHVIKFGSDR----------RDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSN-VS 70 (264) Q Consensus 2 ~qYl~l~~~il~~G~~~----------~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn-~~ 70 (264) |||++|+++||+||+.+ .||||++|+|+||+++|||++ +||||||||++||++++|++|||+|+|| ++ T Consensus 5 ~qYl~ll~~Il~~G~~~~~~~~r~~~~~drtg~~t~sifg~~~~~d~~-~fPllTtKk~~~k~~i~EllWfl~G~tn~~~ 83 (278) T 1bkp_A 5 KQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNS-EVPILTTKKVAWKTAIKELLWIWQLKSNDVN 83 (278) T ss_dssp HHHHHHHHHHHHHCEECTTSCCCCBBTTTCCBCCEEEEEEEEEEECSS-SCCCCSSSCCCHHHHHHHHHHHHTSCCCBHH T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCC-CCCCEEECCCCHHHHHHHHHHHHHCCCCCHH T ss_conf 999999999998486743444444324688888768865715897189-9970142030389999999999716874156 Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCHHHCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCC Q ss_conf 8864003213565421001387662010003-677532688999999999808852367775169888320242113540 Q gi|254780956|r 71 YLHRHGVSIWDEWADKDGELGPIYGVQWRSW-PDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCL 149 (264) Q Consensus 71 ~l~~~~~~iWd~~a~~~g~lg~~YG~qwR~~-~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~ 149 (264) +|.++|++||++|++++|++|++||+|||++ ..+.++++||+++||++||+||+|||+|+++|||+++++|+|||||+. T Consensus 84 ~l~~~~~~iW~~~~~~~g~~~~~YG~~~~~~~~~~~~~~~DQl~~vi~~Lk~nP~sRR~ii~~wnp~~~~~~~lpPC~~~ 163 (278) T 1bkp_A 84 DLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYE 163 (278) T ss_dssp HHHTTTCCTTGGGCCTTSBCBSCTHHHHHCCCEEETTEEECHHHHHHHHHHHSTTCSCCEEESCCTTTGGGBSSCCSEEE T ss_pred HHHHCCCCEEHHCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCHHHHCCCCCCCEEEE T ss_conf 78762663012105455535776673330241356886522558899987029742320010368166537877742567 Q ss_pred EEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCE Q ss_conf 24667688059999726244022202167999999999997622421111352273021003689999983369876877 Q gi|254780956|r 150 FQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQ 229 (264) Q Consensus 150 ~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~ 229 (264) +||+|++|+|+|++||||||++||+||||++|++|++|||+.||++||+|+|++||+|||+||+|++++||+|+|+++|+ T Consensus 164 ~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~syalL~~~iA~~~gl~~G~~~~~~gd~HIY~~h~~~v~~ql~R~p~~~P~ 243 (278) T 1bkp_A 164 TQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPE 243 (278) T ss_dssp EEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCCE T ss_pred EEEEEECCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCCE T ss_conf 99998089737999814155563378519999999999999729977548998401476374799999985789999998 Q ss_pred EEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 99648868711262033799768768887875569 Q gi|254780956|r 230 MIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 230 L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) |+|++++++|+||++|||+|+||+|||+||||||| T Consensus 244 l~i~~~~~~i~d~~~~Df~l~~Y~~~p~ik~~~aV 278 (278) T 1bkp_A 244 LWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278 (278) T ss_dssp EEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCBC T ss_pred EEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC T ss_conf 89789988531398607799798789988757619 No 15 >1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1 Probab=100.00 E-value=0 Score=703.47 Aligned_cols=259 Identities=46% Similarity=0.841 Sum_probs=247.5 Q ss_pred CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHH----- Q ss_conf 957999999998639260379985347776120464423698104642022688999999985366646888640----- Q gi|254780956|r 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRH----- 75 (264) Q Consensus 1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~----- 75 (264) ||||++|+++||++|+.++||||++|+|+||+++||||++|||||||||++||++++|++|||+|+||+++|++. T Consensus 1 MkQYl~ll~~IL~~G~~~~dRtG~~T~svFG~~~rfdl~~gfPlLTTKkv~~k~~i~ELlWfl~G~tni~~L~~~~~~~~ 80 (286) T 1tis_A 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELIWFLSGSTNVNDLRLIQHDSL 80 (286) T ss_dssp CCHHHHHHHHHHTTCCEECCSSCSCEEEEECCEEEEEGGGCCCCCCSSCCCCHHHHHHHHHHHHTCCBHHHHHHHHHSCS T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC T ss_conf 96899999999985988569999876886032378637779972232121057789999999836987999997505553 Q ss_pred --CCCHHHHH--------HHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCC Q ss_conf --03213565--------42100138766201000367753268899999999980885236777516988832024211 Q gi|254780956|r 76 --GVSIWDEW--------ADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPP 145 (264) Q Consensus 76 --~~~iWd~~--------a~~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpP 145 (264) +.++|+++ +.++|++|++||+|||+|. ++||+++||++||+||+|||+|+++|||.++++|++|| T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~lG~~YG~qwR~~~-----~~DQl~~vi~~Lk~~p~sRR~i~s~wnp~~~~~~~lpP 155 (286) T 1tis_A 81 IQGKTVWDENYENQAKDLGYHSGELGPIYGKQWRDFG-----GVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPP 155 (286) T ss_dssp SSSCCTTHHHHTTTTGGGTCCTTBCCSCHHHHHHCBT-----TBCHHHHHHHHHHHSTTCSCCBCCCCCGGGGGGCSSCC T ss_pred CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEECCCC-----CCCHHHHHHHHHHHCCCHHHEEEECCCHHHHCCCCCCC T ss_conf 3665234210000222221458861532362432689-----72699999999864985013000015876612678865 Q ss_pred CCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCC Q ss_conf 35402466768805999972624402220216799999999999762242111135227302100368999998336987 Q gi|254780956|r 146 CHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPR 225 (264) Q Consensus 146 C~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~ 225 (264) ||..+||+|++|+|+|+++|||||++||+|||+++|++|++|||++||++||+|+|++||+|||+||++++++||+|+|+ T Consensus 156 C~~~~qf~v~~~~L~~~~~qRS~D~~lG~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~d~HIY~~h~~~~~~ql~R~p~ 235 (286) T 1tis_A 156 CHMFYQFNVRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPK 235 (286) T ss_dssp SEEEEEEEECSSEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEESSCCTTTGGGSSCCCC T ss_pred CCEEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEHHHHHHHHHHHCCCCC T ss_conf 64046889659808999985154401446515999999999999985566752899714348637479999999667998 Q ss_pred CCCEEEECC------------CCCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 687799648------------868711262033799768768887875569 Q gi|254780956|r 226 TLPQMIINP------------NIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264) Q Consensus 226 ~~P~L~i~~------------~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264) ++|+|+|++ ++++|++|++|||+|+||+|||+||||||| T Consensus 236 ~~P~l~i~~~~~~~~~~~~~~~~~~i~~~~~~Df~l~~Y~~hp~ik~~~av 286 (286) T 1tis_A 236 ELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286 (286) T ss_dssp SCCCCEECCCCGGGGGSCHHHHHHHHHTCCGGGEECSSCCCCCCCCCCCCC T ss_pred CCCCEEECCCCCCCCCCCCCCCCCHHHCCCHHHEEEECCCCCCCCCCCCCC T ss_conf 898068657865443222344556040398226799797789987757629 No 16 >1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A* Probab=100.00 E-value=0 Score=522.07 Aligned_cols=214 Identities=24% Similarity=0.288 Sum_probs=201.3 Q ss_pred CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH Q ss_conf 95799999999863926037998534777612046442369810464202268899999998536664688864003213 Q gi|254780956|r 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIW 80 (264) Q Consensus 1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW 80 (264) |++|...+..+|+||+++.||||++|+|+||++|++|++++||++|||+ +++||+||||||||+++|.+++++|| T Consensus 8 ~~~~r~~l~~~l~~g~~~~drtG~~T~~i~g~~~~~d~~~~f~~~ttk~-----i~~EllWflsGstni~~L~~~~~~iW 82 (246) T 1b5e_A 8 VEEIRLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEPFIFGALNDEY-----IQRELEWYKSKSLFVKDIPGETPKIW 82 (246) T ss_dssp HHHHHHHHHHHHHTTCCEECTTSCEEEEEEEEEEECCSSCSSSCCCHHH-----HHHHHHHHHHTCSBGGGSSSSCCHHH T ss_pred HHHHHHHHHHHHHCCCEECCCCCCCEEEECCEEEEEECCCCCCCCCHHH-----HHHHHHHHHHCCCCHHHHHHCCCCHH T ss_conf 9999999999986798404899996426465799986776778676557-----99999999837987999864683243 Q ss_pred HHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHH-----HHHHCCCCCCCCCEEEEEC Q ss_conf 56542100138766201000367753268899999999980885236777516988-----8320242113540246676 Q gi|254780956|r 81 DEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVA-----LIDKMALPPCHCLFQFYVD 155 (264) Q Consensus 81 d~~a~~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~-----~~~~~~lpPC~~~~qf~v~ 155 (264) |+|++++|++||+||+||+. +.++||+++||++||+||+|||+|+++|||. +.++|++||||..+||+|+ T Consensus 83 ~~~a~~~g~lg~~YG~r~~~-----~~~~dQi~~vI~~Lk~nP~SRR~iv~~WnP~~~~d~~~~~~~lpPC~~~~qF~Vr 157 (246) T 1b5e_A 83 QQVASSKGEINSNYGWAIWS-----EDNYAQYDMCLAELGQNPDSRRGIMIYTRPSMQFDYNKDGMSDFMCTNTVQYLIR 157 (246) T ss_dssp HHHSCTTSBCSCCHHHHHHC-----GGGTCHHHHHHHHHHHCTTCSCCEEECCCTTHHHHTTGGGCCCCCCEEEEEEEEE T ss_pred HHHCCCCCCCCCCCCCCCCC-----CCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHCCCCCCCCCCCCCCEEEEEEEEE T ss_conf 56405278625888865147-----7652349999999860999772799961620022322012788887477999992 Q ss_pred CCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHC-------CCCEEEEEECCCCEEEHHHHHHHHHHHCCCC Q ss_conf 88059999726244022202167999999999997622-------4211113522730210036899999833698 Q gi|254780956|r 156 NGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIG-------FQYGEFIHTLGDVHLYNNHFEQADLQLSRSP 224 (264) Q Consensus 156 ~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~g-------l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p 224 (264) +|+|+|+++|||||+|+|+|||+|+|++|+++||..+| ++||+|+|+++|+|||+||+++|++++++.+ T Consensus 158 ~gkL~~~v~qRS~D~~lG~pfNia~~~~Ll~~ia~~l~~~~~~~~l~~G~~~h~~gd~HIYenh~~~Ve~~l~~~~ 233 (246) T 1b5e_A 158 DKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGSLHVYSRHFYLVDHWWKTGE 233 (246) T ss_dssp TTEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEEEEEEEEEGGGHHHHHHHHHHCC T ss_pred CCEEEEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHHH T ss_conf 9989999996154433127538999999999999996567654674044999998878985878999999986324 No 17 >1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Probab=51.13 E-value=12 Score=17.08 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=38.3 Q ss_pred HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCC Q ss_conf 997622-42111135227302100368999998336987687799648868 Q gi|254780956|r 188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIV 237 (264) Q Consensus 188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~ 237 (264) .|..+| +.+|+.+..+....+..-..+.+.+.|+..+-+ =+|+|-|..+ T Consensus 37 ~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~-v~L~v~ps~~ 86 (88) T 1kwa_A 37 MIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGS-ITFKIVPSYR 86 (88) T ss_dssp HHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEE-EEEEEECCCC T ss_pred HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCC-EEEEEEECCC T ss_conf 7998399988999999999997799899999999769996-9999984776 No 18 >2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Probab=44.34 E-value=16 Score=16.41 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=35.1 Q ss_pred HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCC Q ss_conf 9762242111135227302100368999998336987687799648868 Q gi|254780956|r 189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIV 237 (264) Q Consensus 189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~ 237 (264) |...|+++|+.+..+...-+-.-..+++...|++.+.+ =+|.+.+..+ T Consensus 40 A~~~gL~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~-v~L~V~R~~~ 87 (89) T 2q3g_A 40 AAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGER-LSLGLSRAIT 87 (89) T ss_dssp HHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTE-EEEEEEEECC T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEECCC T ss_conf 89859999999999999999999899999998769998-9999997985 No 19 >2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=35.23 E-value=22 Score=15.53 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=37.6 Q ss_pred HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCC Q ss_conf 997622-421111352273021003689999983369876877996488 Q gi|254780956|r 188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPN 235 (264) Q Consensus 188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~ 235 (264) .|..+| +++|+.+..+.+..+-.--.+++.+.|+..|..--+|.|.+. T Consensus 56 ~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~llk~~~~~~V~L~v~r~ 104 (108) T 2d92_A 56 VAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG 104 (108) T ss_dssp HHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC T ss_pred HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEEEC T ss_conf 5896399996999999999998899899999999628998699999948 No 20 >1zd0_A Hypothetical protein PF0523; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: d.329.1.1 Probab=33.87 E-value=15 Score=16.60 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=24.1 Q ss_pred EEHHHHHHHHHHHHHHCCCCCHHH-HHHHCCC Q ss_conf 202268899999998536664688-8640032 Q gi|254780956|r 48 KKVHWKSVVHELLWFLRGDSNVSY-LHRHGVS 78 (264) Q Consensus 48 kk~~~k~~i~EllW~l~G~tn~~~-l~~~~~~ 78 (264) .++-.|++-.|++.++||++++.. |+..|++ T Consensus 67 g~~~ar~l~~EiL~~lSg~rqI~~Alk~~Gi~ 98 (150) T 1zd0_A 67 GRSIAKTVPGEILVRLSGNRQIKEAIKKVGAK 98 (150) T ss_dssp TCCSSSSHHHHHHHHHHTCSSHHHHHHHHBCC T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCC T ss_conf 98442872678988856614399999984889 No 21 >2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consortium, SGC, unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Probab=32.62 E-value=25 Score=15.27 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=34.5 Q ss_pred HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECC Q ss_conf 99762242111135227302100368999998336987687799648 Q gi|254780956|r 188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINP 234 (264) Q Consensus 188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~ 234 (264) .|...|+++|+.+..+....+-.-..+++...|++.+.+ =+|.|.+ T Consensus 39 ~A~~~gL~~GD~Il~INg~~v~~~~~~e~~~~l~~~~~~-v~L~V~R 84 (91) T 2pkt_A 39 KAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDN-LTLTVAR 84 (91) T ss_dssp HHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE-EEEEEEE T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEE T ss_conf 899879999999998999999999899999998779982-9999998 No 22 >2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Probab=32.09 E-value=25 Score=15.22 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=37.0 Q ss_pred HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCC Q ss_conf 99762242111135227302100368999998336987687799648868 Q gi|254780956|r 188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIV 237 (264) Q Consensus 188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~ 237 (264) -|...|+++|+.+..+++..|.. ++.+...++..|-.--++.+.++-+ T Consensus 16 pA~~AGl~~GD~I~~ing~~i~~--~~~~~~~i~~~~g~~v~l~v~R~g~ 63 (91) T 2zpm_A 16 AASXAGLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGS 63 (91) T ss_dssp HHHHTTCCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEEEETTE T ss_pred HHHHCCCCCCCEEEEECCEEECC--HHHHHHHHHHCCCCCEEEEEEECCE T ss_conf 37765899999999979988489--9999999983979938999999999 No 23 >1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=31.80 E-value=26 Score=15.19 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=34.8 Q ss_pred HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCC Q ss_conf 997622421111352273021003689999983369876877996488 Q gi|254780956|r 188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPN 235 (264) Q Consensus 188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~ 235 (264) .|..+|+.+|+.+..+.+..+-.--.+.+...|+..+.. -+|.|.++ T Consensus 58 ~A~~~gL~~GD~Il~VNg~~v~~~~~~~vv~~lk~~~~~-v~L~V~R~ 104 (110) T 1x5q_A 58 PAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTA-VQMRVWRE 104 (110) T ss_dssp HHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSE-EEEEEEEC T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEEC T ss_conf 679758999999999999998999899999998779997-99999989 No 24 >2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, alternative splicing; 1.5A {Homo sapiens} Probab=29.34 E-value=28 Score=14.93 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=36.8 Q ss_pred HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCC Q ss_conf 997622-421111352273021003689999983369876877996488 Q gi|254780956|r 188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPN 235 (264) Q Consensus 188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~ 235 (264) .|..+| +.+|+.+..+.+..+..-..+++.+.|++.|.+ -+|.|.++ T Consensus 44 ~A~~~g~L~~GD~Il~INg~~v~~~~~~e~~~~l~~~~~~-v~L~v~r~ 91 (97) T 2jil_A 44 PADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE-AALLIEYD 91 (97) T ss_dssp HHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSE-EEEEEEEE T ss_pred HHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEEC T ss_conf 6897098989999999999997899899999999829996-99999978 No 25 >3enp_A TP53RK-binding protein; keops complex telomere kinase regulator, alternative splicing, cytoplasm, nucleus, hydrolase; 2.48A {Homo sapiens} Probab=27.98 E-value=24 Score=15.32 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=21.0 Q ss_pred EHHHHHHHHHHHHHHCCCCCHHH-HHHHCCC Q ss_conf 02268899999998536664688-8640032 Q gi|254780956|r 49 KVHWKSVVHELLWFLRGDSNVSY-LHRHGVS 78 (264) Q Consensus 49 k~~~k~~i~EllW~l~G~tn~~~-l~~~~~~ 78 (264) ++--|++-.|++.+|||++++.. |+..|++ T Consensus 71 ~~~tr~l~~Eil~~lS~t~qI~~Alk~fGi~ 101 (177) T 3enp_A 71 KMKTRTLSTEIIFNLSPNNNISEALKKFGIS 101 (177) T ss_dssp CCSSSSHHHHHHHHHCSSSCHHHHHHHHBCC T ss_pred CCCCCCHHHHHHHHHCCCCCHHHHHHHHCCC T ss_conf 9653853889999867645288999983988 No 26 >2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Probab=27.91 E-value=15 Score=16.67 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=33.2 Q ss_pred HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC Q ss_conf 976224211113522730210036899999833698768779964 Q gi|254780956|r 189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN 233 (264) Q Consensus 189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~ 233 (264) |...|+++|+.+..+.+..+-.--.+++.+.|+..+.. .+|.+. T Consensus 46 A~~~gL~~GD~Il~INg~~v~~~s~~~v~~lik~~~~~-v~l~V~ 89 (98) T 2jxo_A 46 AEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE-TKLLVV 89 (98) T ss_dssp HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTE-EEEEEC T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEE T ss_conf 99879999999999999998899999999998779997-999998 No 27 >2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Probab=27.76 E-value=30 Score=14.77 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=35.4 Q ss_pred HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCC Q ss_conf 997622-4211113522730210036899999833698768779964886 Q gi|254780956|r 188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNI 236 (264) Q Consensus 188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~ 236 (264) .|..+| +++|+.+..+.+..+..--.+++...|+..+. .=+|.+.++. T Consensus 49 ~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~lk~~~~-~v~L~V~R~~ 97 (101) T 2jik_A 49 AAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGY-AVSLRVQHRL 97 (101) T ss_dssp HHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCS-EEEEEEEEES T ss_pred HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEECC T ss_conf 389739999999999999999889989999999983999-7999999589 No 28 >2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Probab=26.29 E-value=32 Score=14.60 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=34.6 Q ss_pred HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCC Q ss_conf 976224211113522730210036899999833698768779964886 Q gi|254780956|r 189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNI 236 (264) Q Consensus 189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~ 236 (264) |...|+++|+.+..+.+..+..--..++...+++.+. .=+|.+.++. T Consensus 47 A~~~gL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~~ 93 (97) T 2w4f_A 47 AARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGT-AVQMRVWRER 93 (97) T ss_dssp HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCS-EEEEEEECCS T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEECC T ss_conf 8985999999999999999999999999999768989-8999999899 No 29 >2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Probab=24.63 E-value=34 Score=14.41 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=37.4 Q ss_pred HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCC-CEEEECCCC Q ss_conf 997622-4211113522730210036899999833698768-779964886 Q gi|254780956|r 188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTL-PQMIINPNI 236 (264) Q Consensus 188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~-P~L~i~~~~ 236 (264) .|..+| +.+|+.+..+.+..+-.-..+++.+.|+..+.+. =+|.+.+.. T Consensus 51 ~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~ll~~~~~~~~v~l~v~r~~ 101 (111) T 2koj_A 51 AAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQE 101 (111) T ss_dssp HHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECC T ss_pred HHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 589719999999999999999889999999999981899998999998289 No 30 >2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Probab=24.13 E-value=35 Score=14.36 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=35.9 Q ss_pred HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCC Q ss_conf 997622-421111352273021003689999983369876877996488687 Q gi|254780956|r 188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVD 238 (264) Q Consensus 188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~ 238 (264) .|...| +++|+.+..+....+..--.+.+.+.|++.+.+ -+|.|.++..- T Consensus 147 ~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~lk~~~~~-v~L~V~Rd~~~ 197 (200) T 2qt5_A 147 PADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE-ATLLIEYDVSV 197 (200) T ss_dssp HHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSE-EEEEEEEEEEC T ss_pred HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCE-EEEEEEECCCC T ss_conf 5673389999989998999898999899999999838997-89999979976 No 31 >2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=24.06 E-value=35 Score=14.35 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=32.4 Q ss_pred HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCC Q ss_conf 997622421111352273021003689999983369876877996488 Q gi|254780956|r 188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPN 235 (264) Q Consensus 188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~ 235 (264) -|...||++|+.+..+...-|..--.+++.+.|++.... =+|.+-++ T Consensus 73 pA~~aGL~~GD~Il~Ing~~v~~~~~~e~v~~i~~~g~~-v~L~V~r~ 119 (126) T 2yuy_A 73 PAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTT-LELSVMPK 119 (126) T ss_dssp HHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHTCTTE-EEEECCCC T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEEC T ss_conf 799869988999999999998899999999998779997-99999969 No 32 >1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Probab=23.83 E-value=36 Score=14.32 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=33.5 Q ss_pred HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC Q ss_conf 9976224211113522730210036899999833698768779964 Q gi|254780956|r 188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN 233 (264) Q Consensus 188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~ 233 (264) .|...|+.+|+.+..+.+.-+-.-..+++.+.|+..+...=+|.+- T Consensus 48 ~A~~aGL~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~~v~l~v~ 93 (111) T 1vae_A 48 SASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV 93 (111) T ss_dssp SHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEE T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEE T ss_conf 7898499889999999999989998999999987689986899997 No 33 >1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A {Escherichia coli K12} SCOP: f.1.1.1 Probab=23.82 E-value=24 Score=15.36 Aligned_cols=46 Identities=24% Similarity=0.404 Sum_probs=32.1 Q ss_pred CCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCC------HHHHHHHHCCHHHHHHCC Q ss_conf 138766201000367753268899999999980885------236777516988832024 Q gi|254780956|r 89 ELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPY------SRRHIVSAWNVALIDKMA 142 (264) Q Consensus 89 ~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~------sRR~i~~~wnp~~~~~~~ 142 (264) ++-..+|.+.|+ +|+=-..+++.++||+ +|-+|..+|.--+.++|| T Consensus 162 ~iKnfQGKkIRs--------~deALksfeK~k~n~nkKin~kDR~AI~nALesid~~dmA 213 (321) T 1a87_A 162 DIKNFHGRNIRS--------YNEAMASLNKVLANPKMKVNKSDKDAIVNAWKQVNAKDMA 213 (321) T ss_dssp HHHTCCGGGCCC--------HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHTCCHHHHH T ss_pred HHHHHCCCCCCC--------HHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHCCHHHHH T ss_conf 866522771367--------9999999998740621221431499999999972899999 No 34 >2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Probab=23.40 E-value=36 Score=14.27 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=30.6 Q ss_pred HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCC Q ss_conf 97622421111352273021003689999983369876 Q gi|254780956|r 189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRT 226 (264) Q Consensus 189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~ 226 (264) |..+||++|+.+..+...-+..--.+++.+.|++.+.. T Consensus 50 A~~~GL~~GD~I~~Ing~~v~~~~~~~~~~~i~~~~~~ 87 (96) T 2ego_A 50 AQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNV 87 (96) T ss_dssp HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTE T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE T ss_conf 99858988999999999998899999999998769998 No 35 >2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Probab=23.35 E-value=36 Score=14.26 Aligned_cols=44 Identities=5% Similarity=0.143 Sum_probs=31.2 Q ss_pred HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC Q ss_conf 976224211113522730210036899999833698768779964 Q gi|254780956|r 189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN 233 (264) Q Consensus 189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~ 233 (264) |...|+++|+.+..+.+..+-.-..+++...|+..+.. =+|.+. T Consensus 43 A~~~gL~~GD~Il~INg~~v~~~~~~ev~~~i~~~~~~-v~l~V~ 86 (102) T 2d90_A 43 AEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ-TTLLVL 86 (102) T ss_dssp TTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTE-EEEEEC T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEE T ss_conf 99869988999999999998999899999999749996-999999 No 36 >1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=22.83 E-value=37 Score=14.20 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=37.5 Q ss_pred HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCC Q ss_conf 997622-4211113522730210036899999833698768779964886 Q gi|254780956|r 188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNI 236 (264) Q Consensus 188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~ 236 (264) .|..+| +++|+.+..+.+.-+-.-..+++...|+..+. .-+|.|.++. T Consensus 61 ~A~~~G~l~~GD~Il~VNg~~v~~~t~~ev~~~i~~~~~-~v~L~v~r~~ 109 (117) T 1ujd_A 61 SAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSG-EAEICVRLDL 109 (117) T ss_dssp HHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSS-CEEEEEESSC T ss_pred HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEECC T ss_conf 489849999999999999999789979999999983999-5999999799 No 37 >3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Probab=22.78 E-value=37 Score=14.20 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=30.0 Q ss_pred HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCC Q ss_conf 997622421111352273021003689999983369 Q gi|254780956|r 188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRS 223 (264) Q Consensus 188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~ 223 (264) .|...||.+|+.+..+...-+-.-..+++...++.. T Consensus 47 ~A~~~GL~~GD~Il~INg~~v~~~~~~~~~~ll~~~ 82 (94) T 3kzd_A 47 LASKKGLKAGDEILEINNRAADALNSSMLKDFLSQP 82 (94) T ss_dssp HHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHSS T ss_pred HHHHHCCCCCCEEEEECCEECCCCCHHHHHHHHHCC T ss_conf 889818847899999999998999999999998669 No 38 >1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1 Probab=22.35 E-value=29 Score=14.83 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=28.1 Q ss_pred CCHHHHHHHHHHHHHCCCC------HHHHHHHHCCHHHHHHCC Q ss_conf 3268899999999980885------236777516988832024 Q gi|254780956|r 106 GNVIDQISSIVQSLRADPY------SRRHIVSAWNVALIDKMA 142 (264) Q Consensus 106 ~~~~DQl~~vi~~Lk~np~------sRR~i~~~wnp~~~~~~~ 142 (264) -+.+|+=-...++.++||+ +|-+|..+|..-+.++|+ T Consensus 53 IRs~~dAl~s~eK~k~nlnkKi~~kDr~AI~nAles~d~~~~A 95 (204) T 1col_A 53 IRSFDDAMASLNKITANPAMKINKADRDALVNAWKHVDAQDMA 95 (204) T ss_dssp CCCHHHHHHHHHHHHTSGGGCCCHHHHHHHHHHHHTCCHHHHH T ss_pred CCCHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHCCHHHHH T ss_conf 5789999999999874665551351499999999974899999 No 39 >1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Probab=21.86 E-value=39 Score=14.08 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=34.5 Q ss_pred HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC Q ss_conf 9976224211113522730210036899999833698768779964 Q gi|254780956|r 188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN 233 (264) Q Consensus 188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~ 233 (264) .|...|+++|+.+..+++..+..--.+.+...|+..+... +|.+. T Consensus 44 ~A~~~GL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v-~l~V~ 88 (91) T 1m5z_A 44 PGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKL-DLVIS 88 (91) T ss_dssp HHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEE-EEEEE T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE-EEEEE T ss_conf 4552716399999999999989999999999987699989-99999 No 40 >2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=21.50 E-value=40 Score=14.04 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=33.5 Q ss_pred HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCC Q ss_conf 97622421111352273021003689999983369876877996488 Q gi|254780956|r 189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPN 235 (264) Q Consensus 189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~ 235 (264) |...+|++|+.+..+...-+-.-..+++...|++.+... +|.+.+. T Consensus 45 a~~~gL~~GD~Il~VNg~~v~~~s~~evv~ll~~~~~~v-~L~V~r~ 90 (94) T 2eeg_A 45 AALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHL-TLSVSSG 90 (94) T ss_dssp HHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCE-EEEEECC T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE-EEEEEEC T ss_conf 998799999999989999999998999999997699849-9999928 No 41 >2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Probab=20.99 E-value=41 Score=13.97 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=35.5 Q ss_pred HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECC Q ss_conf 997622-42111135227302100368999998336987687799648 Q gi|254780956|r 188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINP 234 (264) Q Consensus 188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~ 234 (264) .|..+| +.+|+.+..+....+..-..+++.+.|+..+-+ =+|.+.+ T Consensus 43 ~A~~~g~L~~GD~Il~INg~~v~~~~~~~v~~ll~~~~~~-v~L~v~R 89 (96) T 2qkv_A 43 YPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGK-VSMEVTR 89 (96) T ss_dssp CHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE-EEEEEEC T ss_pred HHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEC T ss_conf 8998099988999999999997799899999999779985-9999983 No 42 >1u39_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=20.83 E-value=41 Score=13.95 Aligned_cols=44 Identities=18% Similarity=0.080 Sum_probs=34.4 Q ss_pred HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC Q ss_conf 976224211113522730210036899999833698768779964 Q gi|254780956|r 189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN 233 (264) Q Consensus 189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~ 233 (264) |...|+.+|+.+..+.+.-+-.-..+++.+.|++.+.. -+|+|- T Consensus 35 A~~~gL~~GD~Il~VNg~~v~~~s~~~~~~ll~~~~~~-v~l~v~ 78 (80) T 1u39_A 35 AERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGE-IHMKTM 78 (80) T ss_dssp HHHHTCCTTEEECEETTEEGGGSCHHHHHHHHHTCCEE-EEEEEE T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEE T ss_conf 99869999999999999997999799999998669898-999997 No 43 >2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, membrane protein; 2.50A {Escherichia coli} Probab=20.77 E-value=17 Score=16.34 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=21.3 Q ss_pred HHHHHHHHHHHCCCC------HHHHHHHHCCHHHHHHCC Q ss_conf 899999999980885------236777516988832024 Q gi|254780956|r 110 DQISSIVQSLRADPY------SRRHIVSAWNVALIDKMA 142 (264) Q Consensus 110 DQl~~vi~~Lk~np~------sRR~i~~~wnp~~~~~~~ 142 (264) |+=-...++.++||+ +|.+|..+|.--+.++|+ T Consensus 56 ~dAl~s~eK~~~n~~~Kin~kDr~AI~nAl~~~d~~~~a 94 (191) T 2i88_A 56 NEALAAFEKYKDVLNKKFSKADRDAIFNALASVKYDDWA 94 (191) T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTTCCTHHHH T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHH T ss_conf 999999999872766652260399999999974899999 No 44 >2k8y_A Uncharacterized protein MJ0187; regulatory subunit of the BUD32 kinase, component of the keops complex, structural genomics, PSI-2; NMR {Methanocaldococcus jannaschii} PDB: 3enh_C* Probab=20.66 E-value=35 Score=14.34 Aligned_cols=32 Identities=28% Similarity=0.209 Sum_probs=24.0 Q ss_pred EEEHHHHHHHHHHHHHHCCCCCHHH-HHHHCCC Q ss_conf 4202268899999998536664688-8640032 Q gi|254780956|r 47 TKKVHWKSVVHELLWFLRGDSNVSY-LHRHGVS 78 (264) Q Consensus 47 tkk~~~k~~i~EllW~l~G~tn~~~-l~~~~~~ 78 (264) ++++-.|+.-.|++.++||++++.. |...|++ T Consensus 50 ~~~~~ar~~~~Eil~~ls~~~qI~~A~~~~g~~ 82 (150) T 2k8y_A 50 TKKPIAKSFWMEILVRASGQRQIHEAIKIIGAK 82 (150) T ss_dssp HCCCSCSSHHHHHHHHTTTSCCHHHHHHHHBCC T ss_pred HCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCC T ss_conf 088443866999999975623199999972867 No 45 >2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Probab=20.09 E-value=42 Score=13.86 Aligned_cols=46 Identities=20% Similarity=0.102 Sum_probs=36.0 Q ss_pred HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC Q ss_conf 9976224211113522730210036899999833698768779964 Q gi|254780956|r 188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN 233 (264) Q Consensus 188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~ 233 (264) .|...|+++|+.+..+.+.-+=.-..+++.+.|+..+...-+|.+- T Consensus 56 ~A~~aGL~~GD~Il~INg~~v~~~t~~evv~~lr~~~~~~v~L~Vv 101 (109) T 2vsv_A 56 SASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVV 101 (109) T ss_dssp HHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEE T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEE T ss_conf 4784778999999999999989998999999987789974899997 Done!