HHSEARCH alignment of GI: 254780956 and SCOP domain: d1f28a_

Alignment
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii [TaxId: 4754]}
Probab=100.00  E-value=0  Score=754.49  Aligned_cols=263  Identities=50%  Similarity=0.947  Sum_probs=255.8

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEE-CEEEEECC-CCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH
Q ss_conf             579999999986392603799853477761-20464423-6981046420226889999999853666468886400321
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFG-YQMRFDLS-KGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSI   79 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg-~~~~~dl~-~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~i   79 (264)
                      +||++||++||++|+.++||||++|+|+|| .+|||||+ +|||||||||||||++++||||||+|+||++.|+++||||
T Consensus         5 ~qYl~ll~~Il~~G~~k~dRTG~gt~s~Fg~~~lrfdL~~~gFPlLTTKkv~~k~vi~ELLWfl~G~tn~~~L~~~~v~i   84 (295)
T d1f28a_           5 QQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETDSLKLREKNIHI   84 (295)
T ss_dssp             HHHHHHHHHHHHHCEEEECTTSSEEEEEESCCCEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTTCCT
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf             99999999999859776887897169872463169976889853465121369999999999986661677776521122


Q ss_pred             HHHHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHH
Q ss_conf             3565421------------0013876620100036--------7753268899999999980885236777516988832
Q gi|254780956|r   80 WDEWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALID  139 (264)
Q Consensus        80 Wd~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~  139 (264)
                      ||+|+++            +|++||+||+|||+|+        +|+++++|||++||++||+||+|||+|+++|||++++
T Consensus        85 Wd~~~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~~~~~~~~~~~~~~~g~DQl~~vi~~lk~nP~sRR~iis~Wnp~~l~  164 (295)
T d1f28a_          85 WDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLE  164 (295)
T ss_dssp             THHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGG
T ss_pred             CCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHC
T ss_conf             20122321333124111106874432223555248744445446788571899999974500887400588834676723


Q ss_pred             HCCCCCCCCCEEEEEC------CCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHH
Q ss_conf             0242113540246676------8805999972624402220216799999999999762242111135227302100368
Q gi|254780956|r  140 KMALPPCHCLFQFYVD------NGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHF  213 (264)
Q Consensus       140 ~~~lpPC~~~~qf~v~------~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~  213 (264)
                      +|||||||+.+||+|+      +|+|+|++||||+|+|||+|||||+||+|++|||++||++||+|+|++||+|||+||+
T Consensus       165 ~~~LpPCh~~~qf~V~~~~~~~~~~L~~~~~QRS~D~~LG~pfNiasyalL~~~iA~~~gl~~g~~~~~~gd~HIY~nH~  244 (295)
T d1f28a_         165 KMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHI  244 (295)
T ss_dssp             GSSSCCSEEEEEEEECCCSTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEHHHH
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEHHHHHH
T ss_conf             02221043055788613687776638999963366554303023899999999999971866652899823046188699


Q ss_pred             HHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             999998336987687799648868711262033799768768887875569
Q gi|254780956|r  214 EQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       214 ~~vk~ql~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |+|+|||+|+|+++|+|+|++++++|+||+++||+|+||+|||+|||||||
T Consensus       245 e~v~eqL~R~P~~~P~L~i~~~~~~i~d~~~~Df~L~~Y~~hp~Ik~~mAV  295 (295)
T d1f28a_         245 EALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI  295 (295)
T ss_dssp             HHHHTGGGSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred             HHHHHHHCCCCCCCCEEEECCCCCCHHCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             999999658998999889589988551396225699796689986604159


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Thymidylate synthase/dCMP hydroxymethylase
superfamily: Thymidylate synthase/dCMP hydroxymethylase
family: Thymidylate synthase/dCMP hydroxymethylase
domain: Thymidylate synthase
species: Pneumocystis carinii [TaxId: 4754]